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Oryza sativa
cluster # 9219 cluster # 9219       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9219#0 length = 1121 sequences # 6  

consensusID : consensus_9219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1121
fasta sequence
                              [TCCACGAGAAGCAGCAGCAGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGGGAAGCAATGGTGGCGACGAACCTGAAGGCGGAGACGGTGGGGCTGATGGACCGGCGGGCGGCGGTGGAGGCGGAGATGGACGCCATCATCGCCGCCCTCTCCGTGCCCGTCGGGCCGGGGATCACCGGCGGCCTCGTGGACGCGGAGGGTTTCCCCAGGTCCGACATCGACATCCCGGCCGTCCTCGCCCAGCGCCGCAAGCTCGCCGAATTGCGGAATGATCACAAGGATATTACGAACAAAATTGAGAAGAATCTGGAAGTTTTGCACTCAACAAAATTGTCAAGAAATGAAGCGTCAATCCCTGCAAGTTCTGGCACACCTGCTTCATTGCACAGTGGGTTATCTCAAAATGATCCTATGGAAGAAGATGCTGTGACCAGACTTCCTTTTGCCATAATTGATGAACTGACAGATGGTTCTCCTGCTGCTGTGGATGGCTTGCAGCTTTGGGATGAGATAGTAAAGTTTGGAAATGTGGAAGCAGGTGATAGATTGCAAGAAAGGCTTGTCTCTGAAGCTCTTTCCAATGAGGATTGTCAAGTATCTCTAGTCATCATTCGTCAGGGATCATCAATGAACTTAACTGTTACACCAAGAGAGTGGCACGGAAGAGGACTTTTGGGATGCCATTTCCGAATCTTATGAACAACGG-GCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTGTGCTTGCAGACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATCTAAGACAATCTGATTAACCTATGAAAGGATTAAAT-GCTTTCATGTTT-GTACTTGT-GCA-GACAGCCCTTGCAGCACCGAGAGCAATCTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTTGGAGTTTTTTTTAGGTGCATTGTTCTCATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAGTCTGTTGGCACTAACCAAAAACCACTCCTTGACTGAAAAAA]

[+] EMBL AK072629             [TCCACGAGAAGCAGCAGCAGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGGGAAGCAATGGTGGCGACGAACCTGAAGGCGGAGACGGTGGGGCTGATGGACCGGCGGGCGGCGGTGGAGGCGGAGATGGACGCCATCATCGCCGCCCTCTCCGTGCCCGTCGGGCCGGGGATCACCGGCGGCCTCGTGGACGCGGAGGGTTTCCCCAGGTCCGACATCGACATCCCGGCCGTCCTCGCCCAGCGCCGCAAGCTCGCCGAATTGCGGAATGATCACAAGGATATTACGAACAAAATTGAGAAGAATCTGGAAGTTTTGCACTCAACAAAATTGTCAAGAAATGAAGCGTCAATCCCTGCAAGTTCTGGCACACCTGCTTCATTGCACAGTGGGTTATCTCAAAATGATCCTATGGAAGAAGATGCTGTGACCAGACTTCCTTTTGCCATAATTGATGAACTGACAGATGGTTCTCCTGCTGCTGTGGATGGCTTGCAGCTTTGGGATGAGATAGTAAAGTTTGGAAATGTGGAAGCAGGTGATAGATTGCAAGAAAGGCTTGTCTCTGAAGCTCTTTCCAATGAGGATTGTCAAGTATCTCTAGTCATCATTCGTCAGGGATCATCAATGAACTTAACTGTTACACCAAGAGAGTGGCACGGAAGAGGACTTTTGGGATGCCATTTCCGAATCTTATGAACAACGG GCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTGTGCTTGCAGACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATCTAAGACAATCTGATTAACCTATGAAAGGATTAAAT GCTTTCATGTTT GTACTTGT GCA GACAGCCCTTGCAGCACCGAGAGCAATCTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTTGGAGTTTTTTTTAGGTGCATTGTTCTCATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAGTC                                       ]
[+] EMBL OSS3916A             [                                                                                                                                 GCGGCGGTGGAGGCGGAGATGGACGCCATCATCGCCGCCCTCTCCGTGCCCGTC GGNCGGGGATCACCGGCGGCCTCGTGGACGCGGAGGGTTTCCCCAGGTCCGACATCGACATCCCGGCCGTCCTCGCCCAGCGCCGCAAGCTCGCCGAATTGCGGAATGATCACAAGGATATTACGAACAAAATTGAGAAGAATCTGGAAGTTTTGCACTCAACAAAATTNTCAAGAAATGAAGCGTCAATCCCTGCAAGTTCTGGCACACCTGCTTCATTGCACAGTGGGTTATCTCAAAATGATCCTATGGAAGAAGATGCTGTGACCAGACTTCCTTTTGCCATAATTGATGAACTGACAGATGGTTCTCCTGCTGCTGTGGATGGCTTTCAGTTTTGGGATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF335318             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAAATGTGGAAGCAGGTGATAGATTGCAAGAAAGGCTTGTCTCTGAAGCTCTTTCCAATGAGGATTGTCAAGTATCTCTAGTCATCATTCGTCAGGGATCATCAATGAACTTAACTGTTACACCAAGAAAGTGGCACGGAAGAGGACTTTTGGGATGCCATTTCCGAATCTTATGAACAACGGNGCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTGTGCTTGCAGACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATCTAAGACAATCTGATTAACCTATGAAAGGATTAAAT GCTTTCATGTTT GTACTTGT GCA GACAGCCCTTGCAGCACCGAGAGCAATTTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTTGGAGTTTTTTTTAGGTGCATCGTTCTCATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAGTCTGTTGGCACTAACCAGTAACCACTCCTTGACTGAAAAAA]
[+] EMBL CF331468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGGATGCCATTTCCGAATCTTATGAACAACGG GCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTGTGCTTGCAGACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATCTAAGACAATCTGATTAACCTATGAAAGGATTAAAT GCTTTCATGTTT GTACTTGT GCA GACAGCCCTTGCAGCACCGAGAGCAATCTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTGGGAGTTTTTTTTAGGTGCATTGTTCTCATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAGTCTGTTGGCACTAACCAAAAA                    ]
[-] EMBL CF331467             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGATGCCATTTCCGAATCTTATGAACAACGGCGCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTGTGCTTGCAGACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATTTAAGACAATCTGATTAACCTATGAAAGGATTAAAT GCTTTCATGTTT GTACTTGT GCA GACAGCCCTTGCAGCACCGAGAGCAATCTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTGGGAGTTTTTTTTAGGTGCATTGTTCTCATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAGTCTGTTGGCACTAACCAAAAAa                   ]
[+] EMBL AU108440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGATTAACCTATGAAAGGATTAAATCGCTTTCATGTTTNGTACTTGTNGCANGACAGCCCTTGCAGCACCGAGAGCAATCTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATTGGAAGCAAACCTGGCTGCCTTTGTTTGGAGTTTTTTTTAGGTGCATTGTTCTCATGCATATTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAaaaa                                                     ]


>consensus_9219#0 TCCACGAGAAGCAGCAGCAGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GGGAGGGAGAGGGAAGCAATGGTGGCGACGAACCTGAAGGCGGAGACGGTGGGGCTGATG GACCGGCGGGCGGCGGTGGAGGCGGAGATGGACGCCATCATCGCCGCCCTCTCCGTGCCC GTCGGGCCGGGGATCACCGGCGGCCTCGTGGACGCGGAGGGTTTCCCCAGGTCCGACATC GACATCCCGGCCGTCCTCGCCCAGCGCCGCAAGCTCGCCGAATTGCGGAATGATCACAAG GATATTACGAACAAAATTGAGAAGAATCTGGAAGTTTTGCACTCAACAAAATTGTCAAGA AATGAAGCGTCAATCCCTGCAAGTTCTGGCACACCTGCTTCATTGCACAGTGGGTTATCT CAAAATGATCCTATGGAAGAAGATGCTGTGACCAGACTTCCTTTTGCCATAATTGATGAA CTGACAGATGGTTCTCCTGCTGCTGTGGATGGCTTGCAGCTTTGGGATGAGATAGTAAAG TTTGGAAATGTGGAAGCAGGTGATAGATTGCAAGAAAGGCTTGTCTCTGAAGCTCTTTCC AATGAGGATTGTCAAGTATCTCTAGTCATCATTCGTCAGGGATCATCAATGAACTTAACT GTTACACCAAGAGAGTGGCACGGAAGAGGACTTTTGGGATGCCATTTCCGAATCTTATGA ACAACGGGCCATGGTCCCACATCTATGAAAGAACGAGATGGTTTCGTTTTTGTGCTTGCA GACAGAGCTCTTGCAGAATCAGCGATAACATTCAACATCTAAGACAATCTGATTAACCTA TGAAAGGATTAAATGCTTTCATGTTTGTACTTGTGCAGACAGCCCTTGCAGCACCGAGAG CAATCTGATTAACTGAATGCGTGTCCAAACCTTTTAGCATCCCCTTATTACATGTACATT GGAAGCAAACCTGGCTGCCTTTGTTTGGAGTTTTTTTTAGGTGCATTGTTCTCATGCATA TTGGTCCTATGAAATGATGTCTTATGCACAATCTTTTTGAAAAAGCGATGTAAATCTGAG TCTGTTGGCACTAACCAAAAACCACTCCTTGACTGAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)