These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 757 fasta sequence [ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGA-GATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGG-TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA-TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTCAAAAAAAAAAAAAAA] [+] EMBL AK063232 [ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGA GATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGT ] [+] EMBL OSC0661 [ ACACCCAGACGCAAAATCGCCCTCCTCGTNGCCTGCCGGCGANNATGGCTGCGTCGGCGGCGGCCTACCTCGACGCNGACGAGAACCTCGAGGCCATCATCTNCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTCGAAGCCGGTGGAGGCCCTCAAGACGGNGCTCGAGGGGACGNNCCTCAAGACCCNCGACGAGCGATGCAAGTGGGCGAACTGGATCGTGGTGCACCGNGCGATGATNGCGATCAGGGACGTNGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATNAAGTACCTGTACANAGGTTTTTTNAACAGGG ] [+] EMBL CF331532 [ TACGACATCCTGATGAAGTACCTGTACAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACCAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTANTATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTC ] [-] EMBL CF331533 [ ACGACATCCTGATGAAGTACCTGTACAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATCCCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACCAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTCAAAAAAAAAAAAAAA] [+] EMBL AU166304 [ tnCAGAGG TTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCCCCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGTGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGGAAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGCTTNTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAGTA TATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTTGTGGTTTTCAAGTGAAAAAA ] consensusID : consensus_9220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCTTGATCTTTTTGATTTGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGGCGGCGGCGGCGGCAGGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGGCCCATGATATGAAGATATC] [+] EMBL CA757077 [AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCGGCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAGTCCCGCAAGATCGAGACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCTTGATCTTTTTGATTTGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGGCGGCGGCGGCGGCAGGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCCCCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGATGATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACATCCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTGCCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACTTGCTGATACCGTAAACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGTTTTTTCTCCCAGCTGGCCCATGATATGAAGATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9220#0 ACACACCCAGACGCAAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCG 60 consensus_9220#1 --------------AAAATCGCCCTCCTCGTCGCCTGCCGGCGAGATGGCTTCGTCGGCG 46 ********************************************** consensus_9220#0 GCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAG 120 consensus_9220#1 GCGGCCTACCTCGACGCCGACGAGAACCTCGAGGCCATCATCTCCCGCATCGAGCAGAAG 106 ************************************************************ consensus_9220#0 TCCCGCAAGATCGAGACCCTCCTCAAGCAGT----------------------------- 151 consensus_9220#1 TCCCGCAAGATCGAGACCCTCCTCAAGCAGTAAGCGCCCCCGATTCGTCTTCTCCTTTCT 166 ******************************* consensus_9220#0 ------------------------------------------------------------ consensus_9220#1 TGATCTTTTTGATTTGCTGGGTTGGAGGGTGACCCATCTGTGCGCGTCGCGGCGCGGCGG 226 consensus_9220#0 -----------------CGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCC 194 consensus_9220#1 CGGCGGCGGCGGCAGGTCGAAGCCGGTGGAGGCCCTCAAGACGGCGCTCGAGGGGACGCC 286 ******************************************* consensus_9220#0 CCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGAT 254 consensus_9220#1 CCTCAAGACCCGCGACGAGCGATGCAAGTCGGCGAACTGGATCGTGGTGCACCGCGCGAT 346 ************************************************************ consensus_9220#0 GATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACAT 314 consensus_9220#1 GATGGCGATCAGGGACGTCGACGGCATGTTCAACTCGCTGGATCCCGAGTACTACGACAT 406 ************************************************************ consensus_9220#0 CCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTG 374 consensus_9220#1 CCTGATGAAGTACCTGTACAGAGGTTTGTCAACAGGGGATCGGCCAACATGTGACCAGTG 466 ************************************************************ consensus_9220#0 CCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACT 434 consensus_9220#1 CCTCAAAATTCATGAAAAACTCACCGAGAAAGCAGGCTTAGGATGTATATTGCGCTCACT 526 ************************************************************ consensus_9220#0 TGCTGATACCGTAAACACCGTG-TGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGT 493 consensus_9220#1 TGCTGATACCGTAAACACCGGGGTGAGTTTCATCTCTGTGGAGGGTGGGCAACACAAGGT 586 ******************** * ************************************* consensus_9220#0 TTTTTCTCCCAGCTGCCCCATGATATGAAAATATCTCATTAGGGCCAATTAGTTGTATGG 553 consensus_9220#1 TTTTTCTCCCAGCTGGCCCATGATATGAAGATATC------------------------- 621 *************** ************* ***** consensus_9220#0 AAAATTGTTGTCTAGATGATGTTGATTGTTATCCTCTTCCCTTTCCATTTGGCAGCTAGC 613 consensus_9220#1 ------------------------------------------------------------ consensus_9220#0 TTCTGATAGAGAGCTTCCTTGTACTCTAGTACTAGAGTTGCTGAACTGCTGTACTACTAG 673 consensus_9220#1 ------------------------------------------------------------ consensus_9220#0 TATATATATATTGTTGTTTCCAACACGTTATGTGGCATGAACTATGATAATGAAAATGTT 733 consensus_9220#1 ------------------------------------------------------------ consensus_9220#0 GTGGTTTTCAAAAAAAAAAAAAAA 757 consensus_9220#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||