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Oryza sativa
cluster # 9228 cluster # 9228       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9228#0 length = 720 sequences # 4  
consensus_9228#1 length = 553 sequences # 1  
consensus_9228#2 length = 426 sequences # 1  

consensusID : consensus_9228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 720
fasta sequence
                              [CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA-AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC-CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG-CTCCTGGCGT-TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT-GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG-AGAGGTTCAC-TTCAAAAACATC-GGTCGATCA-TGGGCCATTA-CCGCCGTTCTTC-TTGGTGGCT-ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG-TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA]

[+] EMBL CF334665             [CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTCTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCC                   ]
[+] EMBL CF332656             [                           CCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTCTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAAC                                                                                                                             ]
[+] EMBL C27587               [                                       CTGCAGCCGCGATCGCTGGCAGCAANANGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGG  GCTCGCCGTCCCCGCACTCATTTCTTCCGAGGTCCGCGGCGGCATTCTCAGCCAGCGCAAG CAGNCTCCTGG GTNTCACGAGGCAGGGAGCGGATNTNCCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTNCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGTGGGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAGAAGAGGTTCACTTTCAAAAACATCGGGTCGATCATTGGGCCATTACCCGCCGTTCTTCTTTGGTGGCTAACTTCACTtngct                                                                                                                                                                                                                                                                               ]
[-] EMBL CF334664             [                                                                                                                                                                                                   AAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTAT TGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTTTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTG TTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA]


>consensus_9228#0 CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCA GCGAAAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAA GGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGCCCTTTCTTCCGAGGTCCGCGGCGGCGA TCTCAGCCAGCGCAAGCCAGCTCCTGGCGTTCACAAGGCAGGGAGCGGATGCGTCCACAA GGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAAT TAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGTGGGCAAAACCATTTCAAACTT TGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGC CGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAA AAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCAT GTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCAC TGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTA GAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA



consensusID : consensus_9228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence
                              [CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGGAAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGANCTTTTNTCCGTAN]

[+] EMBL AU085748             [CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGGAAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGANCTTTTNTCCGTAN]


>consensus_9228#1 CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATC TTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTT CCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGG GAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAAT GCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTG GGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATC GGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNAT NGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGG AAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGAN CTTTTNTCCGTAN



consensusID : consensus_9228#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence
                              [TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAATGGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97132               [TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAATGGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9228#2 TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAAT GGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACAT CGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTAT GGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTA GAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATC TCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTAC ATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAA AAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9228#0      CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCA 60
consensus_9228#2      ------------------------------------------------------------
consensus_9228#1      -------------------------------------------CTGCAGCCGCGATCGCT 17
                                                                                  

consensus_9228#0      GCGAAAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAA 120
consensus_9228#2      ------------------------------------------------------------
consensus_9228#1      GGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCG 77
                                                                                  

consensus_9228#0      GGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGCCCTTTCTTCCGAGGTCCGCGGCGGCGA 180
consensus_9228#2      ------------------------------------------------------------
consensus_9228#1      GCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGC 137
                                                                                  

consensus_9228#0      TCTCAGCCAGCGCAAGCCAGCTCCTGGCGTTCACAAGGCAGGGAGCGGATGCGTCCACAA 240
consensus_9228#2      ------------------------------------------------------------
consensus_9228#1      ANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACA 197
                                                                                  

consensus_9228#0      GGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAAT 300
consensus_9228#2      --------------------------------------TAAATGCACTGCTGGATGAAAT 22
consensus_9228#1      AGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAAT 257
                                                            ************* ********

consensus_9228#0      T-AAGGGGAAGAAGCTCAATTCC-GTGCCATTGG-TAATGG-TGGGCAAAACCATTTCAA 356
consensus_9228#2      TTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGG-TAATGG-TGGGCAAANCCATTTCAA 80
consensus_9228#1      T-NAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAA 316
                      *  ****************** * **  **** * ****** ******** *********

consensus_9228#0      ACTTT-GAAATTGTTCGGAGAGAGGTTCACTTCAAAAA--CATCGGTCGATCA-TGGGCC 412
consensus_9228#2      ACTTT-GAAATTGTTCGGAGAGAGGTTCACTTCAAAAA--CATCGGTCGATCA-TGGGCC 136
consensus_9228#1      ACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCC 376
                      ***** *** ** ** ********* *** ** *****   ****** * *** ******

consensus_9228#0      ATTACCGCCGTTCTTCTTGGTGGCTACTTCA-CTGGCTATTGTATGGAAGAGGAGAAAAC 471
consensus_9228#2      ATTACCGCCGTTCTTCTTGGTGGCTACTTCA-CTGGCTATTGTATGGAAGAGGAGAAAAC 195
consensus_9228#1      ATN-CCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAA--C 433
                      **  ******** *  **** ******** * ** ******  ** ** * *  ***  *

consensus_9228#0      CAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAG 531
consensus_9228#2      CAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAG 255
consensus_9228#1      CNNGGAAAAAAGGGAATNTTTAG-GGATTAAGAANCCNCCTTNNGGGGAA---ATTTAAG 489
                      *  * ******** *** ***** * ******** **  * *   * * *   ** ****

consensus_9228#0      GTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGT 591
consensus_9228#2      GTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGT 315
consensus_9228#1      GNNCCNNNN---TTNAAATTTGGGNTTTTTANTTNNNTN---------CCTGGGATNTAC 537
                      *   *       *  **** ***   * *   *    *          * * **** *  

consensus_9228#0      TAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAG 651
consensus_9228#2      TAACTGCACTGTTT-GTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAG 374
consensus_9228#1      GANCTTTTNTCCGTAN-------------------------------------------- 553
                       * **    *   *                                              

consensus_9228#0      GCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTC 711
consensus_9228#2      GCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA-------- 426
consensus_9228#1      ------------------------------------------------------------
                                                                                  

consensus_9228#0      AACAAAAAA 720
consensus_9228#2      ---------
consensus_9228#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)