These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 720 fasta sequence [CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA-AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC-CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG-CTCCTGGCGT-TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT-GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG-AGAGGTTCAC-TTCAAAAACATC-GGTCGATCA-TGGGCCATTA-CCGCCGTTCTTC-TTGGTGGCT-ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG-TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA] [+] EMBL CF334665 [CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTCTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCC ] [+] EMBL CF332656 [ CCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGA AAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGC CCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTCTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAAC ] [+] EMBL C27587 [ CTGCAGCCGCGATCGCTGGCAGCAANANGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGG GCTCGCCGTCCCCGCACTCATTTCTTCCGAGGTCCGCGGCGGCATTCTCAGCCAGCGCAAG CAGNCTCCTGG GTNTCACGAGGCAGGGAGCGGATNTNCCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTNCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGTGGGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAGAAGAGGTTCACTTTCAAAAACATCGGGTCGATCATTGGGCCATTACCCGCCGTTCTTCTTTGGTGGCTAACTTCACTtngct ] [-] EMBL CF334664 [ AAGCCAG CTCCTGGCGT TCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTAT TGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGT GGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAG AGAGGTTCAC TTCAAAAACATC GGTCGATCA TGGGCCATTA CCGCCGTTTTTC TTGGTGGCT ACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATG TGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTG TTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTCAACAAAAAA] consensusID : consensus_9228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGGAAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGANCTTTTNTCCGTAN] [+] EMBL AU085748 [CTGCAGCCGCGATCGCTGGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGCANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACAAGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAATTNAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAAACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCCATNCCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAACCNNGGAAAAAAGGGAATNTTTAGGGATTAAGAANCCNCCTTNNGGGGAAATTTAAGGNNCCNNNNTTNAAATTTGGGNTTTTTANTTNNNTNCCTGGGATNTACGANCTTTTNTCCGTAN] consensusID : consensus_9228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAATGGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97132 [TAAATGCACTGCTGGATGAAATTTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGGTAATGGTGGGCAAANCCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9228#0 CATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCA 60 consensus_9228#2 ------------------------------------------------------------ consensus_9228#1 -------------------------------------------CTGCAGCCGCGATCGCT 17 consensus_9228#0 GCGAAAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAA 120 consensus_9228#2 ------------------------------------------------------------ consensus_9228#1 GGCAGCAAGAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCG 77 consensus_9228#0 GGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGCCCTTTCTTCCGAGGTCCGCGGCGGCGA 180 consensus_9228#2 ------------------------------------------------------------ consensus_9228#1 GCAAGGCAGGACGCGCGGGNTCGNCGTCCCCGCGTCCTTTCTTCCGAGGTCCGCGGCGGC 137 consensus_9228#0 TCTCAGCCAGCGCAAGCCAGCTCCTGGCGTTCACAAGGCAGGGAGCGGATGCGTCCACAA 240 consensus_9228#2 ------------------------------------------------------------ consensus_9228#1 ANTCTCAGCCAGCGCAAGCAGCTCCTNGGTNTCACGAGGCAGGGAGCGGATNTGCCCACA 197 consensus_9228#0 GGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAAT 300 consensus_9228#2 --------------------------------------TAAATGCACTGCTGGATGAAAT 22 consensus_9228#1 AGGNTCCGTATCCTNCCNTATCTNAGGCGGCACCAAGCTAAATGCACTGCTTGATGAAAT 257 ************* ******** consensus_9228#0 T-AAGGGGAAGAAGCTCAATTCC-GTGCCATTGG-TAATGG-TGGGCAAAACCATTTCAA 356 consensus_9228#2 TTAAGGGGAAGAAGCTCAATTCCCGTCCCATTGG-TAATGG-TGGGCAAANCCATTTCAA 80 consensus_9228#1 T-NAGGGGAAGAAGCTCAATTNCCGTTNCATTNGGTAATGGGTGGGCAAAACCATTTCAA 316 * ****************** * ** **** * ****** ******** ********* consensus_9228#0 ACTTT-GAAATTGTTCGGAGAGAGGTTCACTTCAAAAA--CATCGGTCGATCA-TGGGCC 412 consensus_9228#2 ACTTT-GAAATTGTTCGGAGAGAGGTTCACTTCAAAAA--CATCGGTCGATCA-TGGGCC 136 consensus_9228#1 ACTTTTGAANTTTTTNGGAGAGAGGGTCANTTTAAAAAACNATCGGTNGNTCAATGGGCC 376 ***** *** ** ** ********* *** ** ***** ****** * *** ****** consensus_9228#0 ATTACCGCCGTTCTTCTTGGTGGCTACTTCA-CTGGCTATTGTATGGAAGAGGAGAAAAC 471 consensus_9228#2 ATTACCGCCGTTCTTCTTGGTGGCTACTTCA-CTGGCTATTGTATGGAAGAGGAGAAAAC 195 consensus_9228#1 ATN-CCGCCGTTTTCTTTGGNGGCTACTTNAACTTGCTATTNNATNGAGGNGNGGAA--C 433 ** ******** * **** ******** * ** ****** ** ** * * *** * consensus_9228#0 CAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAG 531 consensus_9228#2 CAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAG 255 consensus_9228#1 CNNGGAAAAAAGGGAATNTTTAG-GGATTAAGAANCCNCCTTNNGGGGAA---ATTTAAG 489 * * ******** *** ***** * ******** ** * * * * * ** **** consensus_9228#0 GTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGT 591 consensus_9228#2 GTGTCCCATGTGTGCAAATGTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGT 315 consensus_9228#1 GNNCCNNNN---TTNAAATTTGGGNTTTTTANTTNNNTN---------CCTGGGATNTAC 537 * * * **** *** * * * * * * **** * consensus_9228#0 TAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAG 651 consensus_9228#2 TAACTGCACTGTTT-GTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAG 374 consensus_9228#1 GANCTTTTNTCCGTAN-------------------------------------------- 553 * ** * * consensus_9228#0 GCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTC 711 consensus_9228#2 GCAGCATTAGAGTTGTACATTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA-------- 426 consensus_9228#1 ------------------------------------------------------------ consensus_9228#0 AACAAAAAA 720 consensus_9228#2 --------- consensus_9228#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||