These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 988 fasta sequence [CGACCAAAGCTTTGCATAGGAAATTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGC-GGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAA-GGGTTCCGTGCGCTCGGATTTGG--AGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCAC-GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT-GGAAGTGATACTGGCGCATTCGATTCAGAAGGAAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTCCCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTTTACGATGGGAGCTTTTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAAAAAAAAAAAAA] [+] EMBL CF334018 [CGACCAAAGCTTTGCATAGGAAATTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGCGGGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAAGGGGTTCCGTGCGCTCGGATTTGGNAAGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCACGGGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCATGGGAAGTGATACTGGCGCATTCGATTCAGAAGGAAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTCCCCGATGGCCTGACAG ] [+] EMBL CF310427 [ TTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGC GGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAA GGGTTCCGTGCGCTCGGATTTGG AGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCAC GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT GGAAGTGATACTGGCG ] [+] EMBL CF309746 [ TTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGCGCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGTCTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAACGCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTGGTCTCGTGTCTCGTTAATTTGCTTGCTCGATCGCTACGTTTTCCATTACGAATTTGCGATCGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGC GGCGGTTGGCGCTGCGACGGAACTGCAGAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAA GGGTTCCGTGCGCTCGGATTTGG AGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCAC GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT GGAAGTGATACT ] [-] EMBL CF309747 [ CCTGAAAATGCAACAGCATCAC GGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCAT GGAAGTGATACTGGCGCATTCGATTCAGAAGG AAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTTTACGATGGGAGCTTTTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAAAAAAAAAAAAA] consensusID : consensus_9231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCAAGATCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAAGCAACAGCATCACGGTTTTCTATCTATATAGAGAACATCCCACAAAGGGGTCCATGGAAGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAATGTTCCAAAAA] [-] EMBL CF334017 [CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCAAGATCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAAGCAACAGCATCACGGTTTTCTATCTATATAGAGAACATCCCACAAAGGGGTCCATGGAAGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAAATGTTCCAAAAA] consensusID : consensus_9231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [AGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGTAATCTCTTGCTAGCTGATAGCTTCAGAAACCATATGCATGTATATCTGTTCAAATGGTCTGCTCACTGTATTCGCTTGCACTACTTTTGTACCACGAGAAAATGCAGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAGAAAAAA] [-] EMBL CF310428 [AGTGATACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGTAATCTCTTGCTAGCTGATAGCTTCAGAAACCATATGCATGTATATCTGTTCAAATGGTCTGCTCACTGTATTCGCTTGCACTACTTTTGTACCACGAGAAAATGCAGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGGAGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTGGGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGAATGGTCCATATATATTTACCCAGGAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9231#0 CGACCAAAGCTTTGCATAGGAAATTTTTGCCGATCGTCGGAGAGTACAAACGAGGCGCGC 60 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GCACGCAGCACCAGAGGCGAGTGACCCAACAACAAATGGAGGTTCGTCGACGATGGTCGT 120 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 CTCCGGCGACGGCTGCGGCCATGGCTCTCGTCCTGTTCGCCTCGTCGTCCTCCTGTAAAC 180 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GCCCTGTAACACACAATATCCTCTGTGGCACGCGCGCGTGCGTGCGCGTCTGATTTGTTG 240 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GTCTCGTGTCTCGTTAATTTGCTTACTCGATCGCTACGTTTTCCATTACGAATTTGCGAT 300 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 CGATCCGAGGAAAGGGAGCCCGGCGGCGGCGGCGGCGGTTGGCGCTGCGACGGAACTGCA 360 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GAAGCACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTA 420 consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCCAGATTCAGCGCGACCGTAAT 480 consensus_9231#1 CGAAGGGTTCCGTGCGCTCGGATTTGGAGTTGTTACCTCAAGAT-CAGCGCGACCGTAAT 59 consensus_9231#2 ------------------------------------------------------AGTGAT 6 ** ** consensus_9231#0 CAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGCATCACGGTTTTCTAT 540 consensus_9231#1 CAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAA-GCAACAGCATCACGGTTTTCTAT 118 consensus_9231#2 -ACTGGCGCATTCGATTCAGAAGGAAGGTTTGTCAATG-AAAAGTTCGATGAGATATTTA 64 * ****** *** * * * ** ** ** * ** ** * * * * consensus_9231#0 CTATATAGAGAACATCC-ACAAAGGGGTCCATGGAAGTGATACTGGC----GCATTCGAT 595 consensus_9231#1 CTATATAGAGAACATCCCACAAAGGGGTCCATGGAAGTGATACTGGC----GCATTCGAT 174 consensus_9231#2 CCAAGCATGCAAACTGTACCCGATGGCCTGACAGCAGCCGAACTGGACGAGATGCTTCGT 124 * * * ** * * * ** * * ** ***** * * consensus_9231#0 TCAGAAGGAAAGGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAAC 655 consensus_9231#1 TCAGAAGGAA-GGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAAC 233 consensus_9231#2 GCAAACAGAGAACCCAAGGACTACAAAGGATGGTAA--TCTCTTGCTAGCTGATAGCTTC 182 ** * ** * * **** * * * * * * * *** * * consensus_9231#0 TGTCCCCGATGGCCTG-ACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAAC 714 consensus_9231#1 TGTACCCGATGGCCTG-ACAGCAGCCGAACTGGACGAGATGCTTCGTGCAAACAGAGAAC 292 consensus_9231#2 AGAAACCATATGCATGTATATCTGTTCAAATGGTCTGCTCACTGTATTCGCTTGCACTAC 242 * ** ** ** * * * * ** *** * ** * * * ** consensus_9231#0 CCAAGGACTACAAAGGAT----GGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAG 770 consensus_9231#1 CCAAGGACTACAAAGGAT----GGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAG 348 consensus_9231#2 TTTTGTACCACGAGAAAATGCAGGGTCGGAGCATCGACGGAGTGGGAGACGACGTTCAAG 302 * ** ** * * ************************************** consensus_9231#0 CTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTTTACGATGGG 830 consensus_9231#1 CTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGG 408 consensus_9231#2 CTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACACTGTCAGAACTGTCTACGATGGG 362 ************************************************** ********* consensus_9231#0 AGCTTTTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTG 890 consensus_9231#1 AGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTG 468 consensus_9231#2 AGCTTCTTCAGTAAAGTGGCGTCGAAGAAGAAGGGTCCCTCTGCAAACCAAGCATGATTG 422 ***** ****************************************************** consensus_9231#0 GGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGA 950 consensus_9231#1 GGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGA 528 consensus_9231#2 GGATTTTGGAAGGAAAAATGTACTAAATTGATAGAACATGTCAAGGCATCCCTAAAATGA 482 ************************************************************ consensus_9231#0 ATGGTCCATATATATTTACCCAGGAAAAAAAAAAAAAA 988 consensus_9231#1 ATGGTCCATATATATTTACCCAGGAAATGTTCCAAAAA 566 consensus_9231#2 ATGGTCCATATATATTTACCCAGGAGAAAAAA------ 514 ************************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||