These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 828 fasta sequence [TTCGTCGGGCTGGTCTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTTTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTTTATTGGT--AAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTTGTCATGCTATTCC-AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCA-CCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACT-CTCTCCCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAGGCTCTCATAGGCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCTTAGAGGGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCT-AAGCACCCCTTAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAAGGTTGAAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG] [-] EMBL CA762514 [TTCGTCGGGCTGGTCTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTTTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTTTATTGGTAAAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTTGTCATGCTATTCC AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCA CCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACT CTCTCCCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAG ] [+] EMBL CA762515 [ ttttTTTTTTTTTATGAAATGCCTTTCTTTTCTTCTCGCAACGTAAAATACTCCACAGCCTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGT AAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGCCCGTATGGACACGGTTTGTCATGCTATTCC AAAAAAAAATTACTTGCCAATTGTATGGACTCCTGTCAGATCA CCTCAAATTTGCATACTGGGCATGAAATCCTCATCCCAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACT CTCTCCCTCAACTACAGATAGTGGCAGGCTGTTTATTTGAATGTCAAAAGCACCCCTGTGATGGGTGTTGCCATCAAGGCTTATTAGGCTCTCATAGGCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCTTAGAGGGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCT AAGCACCCCT ] [-] EMBL AU031904 [ tttttTTTTTATTGGT AAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGTGGTCCGTATGGACACGGTTTGTCATGCTATTCCAAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCA CCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAANCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGNAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGNATAT ] [-] EMBL CF336147 [ TGGACTCCTGTCAGATCACCCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACTCCTCTCCCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTCTTATTAGGCTCTCATAGTCATCATCATCAGATTCTGACATAAATTCCTCT CCGAAGTTTCCAAATGCTTCTTCGAGTGAATCCAGTATTGCCATGCGCG TTTCTAGATCCATGTTTTCATC TCTGAAGCATCCTCTAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAAGGTTGAAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG] consensusID : consensus_9237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence [TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTATACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTCC-AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAATCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAGACCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTC] [+] EMBL CF336146 [TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTATACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTCC AAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGA ] [-] EMBL AK063791 [ TTTCTTTTCTTCTCGCAGCGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGAAAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGGTTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATGCTATTCCAAAAAATATTTCCGAT GGTGGTCCGTATGGA CACGGTTTGTCATGCTATTCCAAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCACCTCAGATTTGCATACTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCAGGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGGGTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAATCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAGACCTCAACTACAGATAGTGGCAGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGATGGTTGTTGTCATCAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9237#0 ---------------------------------------------TTCGTCGGGCTG-GT 14 consensus_9237#1 TTTTTTTTTTTTTTTAATAAAAAGCGATAATTGCCACTTGTCTTCCCTGTAGAGGGGTAT 60 ** * * * * consensus_9237#0 CTTCGCCTGTCTTTCTTTTTCTCTTTTTGTTTATGAAATGCCCTTTTTTTCTTCTCGCAG 74 consensus_9237#1 ACCAACGTATACAACAAGGAACACAAGATATTATGAAATGCCTTTCTTTTCTTCTCGCAG 120 * * * * ************ ** ************** consensus_9237#0 CGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGA 134 consensus_9237#1 CGTAAAATACTCCACAGCTTTCAAATATCTCATGTTCATAGAGATCCATGAAAGAGCAGA 180 ************************************************************ consensus_9237#0 AAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGG 194 consensus_9237#1 AAGCAGCACACACTACCGTGCTATTTACACACTGCGGCACCGGCAGTAACAGCTAACAGG 240 ************************************************************ consensus_9237#0 TTACAAGTAACAACGCTTTTTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATG 254 consensus_9237#1 TTACAAGTAACAACGCTTTCTATTGGTAAAAAAAAGAGACGGCTTAAACAGATATTCATG 300 ******************* **************************************** consensus_9237#0 CTATTCCAAAAAATATTTCCGATGG-TGGTCCGTATGGAC-ACGGTTTGTCATGCTATTC 312 consensus_9237#1 CTATTCCAAAAAATATTTCCGATGGGTGGTCCGTATGGACCACGGTTTGTCATGCTATTC 360 ************************* ************** ******************* consensus_9237#0 CAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAGATCACCTCAGATTTGCATA 372 consensus_9237#1 CAAAAAAAAAATTACTTGCCAATGGTATGGACTCCTGTCAAATCACCTCAAATTTGCATA 420 **************************************** ********* ********* consensus_9237#0 CTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCA 432 consensus_9237#1 CTGGGCATGAAATCCTCATCCGAAGCCATTTGTCAATGCACTCTTTATGAAATTTATGCA 480 ************************************************************ consensus_9237#0 GGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGG 492 consensus_9237#1 GGCACGGTAAACGCCGGAGGTATTCACCAGCAGCAGGGCAATCCAGGCATATAGGACAGG 540 ************************************************************ consensus_9237#0 GTTCATCAGAACAACTCTCTCCCTCA-ACTACAGATAGTGGCAGGTTGTTTAT-TTGAAT 550 consensus_9237#1 GTTCATCAGAACAACTCTCTCCCTGATAAAAAGGAGAATGCAAGATTAGCTCTACTAAAT 600 ************************ * * * ** * ** ** ** * * * *** consensus_9237#0 GTCAGAAGCACCCCTGTGATGGTTGT-----TGTCATCAAGTCTTATTAGGCTCTCATAG 605 consensus_9237#1 CCCCCCCCCCCCCCCCCAAAAAAAAAAAAAGCATATCCATATCGAGCAAGACCGATTCAG 660 * * **** * * ** ** ** * ** consensus_9237#0 GCATGATCATCAGATTCTGACCTAGATTCCTCTCCCGAAGCTTCGAAACGGTTCTTAGAG 665 consensus_9237#1 ACCTCAACTACAGATAGTGGC--AGGTTGTTTATTTGAATGTCAGAAGCACCCCTGTGAT 718 * * * * ***** ** * ** ** * *** * *** * ** ** consensus_9237#0 GGAATCCAGGATTGGCATGCGCGTTTTCTAGATTCATGGTTTCATCTTCTAAGCACCCCT 725 consensus_9237#1 GGTTGTTGTCATCAAGTC------------------------------------------ 736 ** ** consensus_9237#0 TAGTCAATTGGGAGATAAGCATCTGAGAATAAGCAAATGTGAGTGCACAAGTGAAGGTTG 785 consensus_9237#1 ------------------------------------------------------------ consensus_9237#0 AAGAAATAAATTTATAAGGATTCACACATTCTGTTGCTCTCTG 828 consensus_9237#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||