These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 682 fasta sequence [GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC-TTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCATGCTGCTTCAGCATTAATGCTT] [+] EMBL CF337653 [GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAG ] [+] EMBL AK073116 [ TTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC TTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGC ] [+] EMBL AK104077 [ CGACTTTTCTTGCTGTGGGGAGAAGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC TTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATT ] [+] EMBL AU162343 [ AGAATCGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTNAGGAAGCAGCTGCCCTGATACTCCTTTTTTTTGAGTATTGCCAAAATGACCAATTCGNGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTNATGCCA ] [+] EMBL CA755194 [ GCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGTTCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATCAGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGGAGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTGGAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCC TTTTTTTGAGTATTGCCNAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCATGCTGCTTCAGCATTAATGCTT] consensusID : consensus_9241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTGGAGGGCCAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA] [-] EMBL CF337652 [AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTGGAGGGCCAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTATCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAATGGGGTCACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAGGAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAACTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGCAACTCAACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9241#0 GCTTCTTCCTCCTTGCGCGCAGCCTCGATTCTCGACTTTTCTTGCTGTGGGGAGAAGAAT 60 consensus_9241#1 ------------------------------------------------------------ consensus_9241#0 CGCGATTGCGCGAGGGGATTTCTTGCTGCTCGGAGATGCCGCGGATTCCGCTGATCAAGT 120 consensus_9241#1 ------------------------------------------------------------ consensus_9241#0 TCCCCAAGAGGAATCTCAAGATCCCATCCCCACCCCCACCAGCGGCGCAACCTGCAGATC 180 consensus_9241#1 ------------------------------------------------------------ consensus_9241#0 AGCACGCGTCCCTCTTGTCCCGATTGGGAGTTAAATCAGAGGCACCATCTTCTTCCGGGG 240 consensus_9241#1 ------------------------------------------------------------ consensus_9241#0 AGATTAAAAATTACCGCTTTAGATCAGATGTGCCTTCCCCACCTTCTTATACGGCTGTTG 300 consensus_9241#1 ------AAAATTACCGCTTTAGATCAGATGTGCTTTCCCCCCTTTTTTATACGGCTGTTG 54 *************************** ****** * ** ************** consensus_9241#0 GAGGGCCAGCTTCACTCCTTCCTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGCTA 360 consensus_9241#1 GAGGGCCAGTTTCACTCTTTCTTAAACGCAAGCCACTGTCAGAGGAAGAAATTGAGGTTA 114 ********* ******* *** *********************************** ** consensus_9241#0 TCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAAACCTTTTAAA 420 consensus_9241#1 TCATGCAAGGTGGTATCTACTGATATTGCATCCGATGAATAAGATACCAACCCTTTTAAA 174 ************************************************** ********* consensus_9241#0 TGGGGTCACTAGAGCCATGTCGATATGGACCTTTTCGTTGTACTCCCTTTTTGGTGTCAG 480 consensus_9241#1 TGGGGTCACTAGAGCCATGTCGATATGGCCCTTTTCGTTGTACTCCCTTTTTGGTGTCAG 234 **************************** ******************************* consensus_9241#0 GAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAA 540 consensus_9241#1 GAAGCAGCTGCCCTGATACTCCTTTTTTTGAGTATTGCCAAAATGACCAATTCGTGAAAA 294 ************************************************************ consensus_9241#0 CTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGC 600 consensus_9241#1 CTGAACATGCAATGCATCGGTTGTTTGCCAAAATACATTGATCATGGAGTTATGCCATGC 354 ************************************************************ consensus_9241#0 AACTCAACTAATTGTCTTATTCCATTGCTCCNAATGTTCTGAGACATTTGTGCTCATCCA 660 consensus_9241#1 AACTCAACTAATTGTTTTATTCCATTGCTCCAAAAAAAAAAAAAAAAAAA---------- 404 *************** *************** ** * * * consensus_9241#0 TGCTGCTTCAGCATTAATGCTT 682 consensus_9241#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||