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Oryza sativa
cluster # 9243 cluster # 9243       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9243#0 length = 1170 sequences # 6  

consensusID : consensus_9243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1170
fasta sequence
                              [AAGTCCAGAGGAAGCCAAGAGATGGGCTCCGCTTCGCTGGCGACGCAGCCTTCGCCGGCGGCGTGCCTCCCGTCCCTGCCCGCCGGCGGCCGTCTCCGCCTCCGCCTGGCTCCACCACCCCGCGCTCCGCCGCGCCTCTGCAAGCGCGCCGGCAAACTCCGGGTTGTTACCATCAGATCAGCTCATAGTGGTGTGAGCAATGTATCTGTAGAAACCCCTCCTGACAATGAGGCATCCGTGACCGGTGCTGCTTACGGCTTCAGAGGAGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAATGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGGGCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATGTGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACAGCACACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGGGTGTCTGCATTTCTGTCAAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCATTCTCGATGAAATAGCATGGATAGGTCACACAAATCGACCCTCTCTGATATAGTTGTTGATGTGAATATAAACTGTTTACAAGGATCAACTACTCAACTAGTGATGCGCTGAAAAGTGAAAACTGAACATTTTTAGGCCAGTCTAAGCAA]

[+] EMBL AK068739             [AAGTCCAGAGGAAGCCAAGAGATGGGCTCCGCTTCGCTGGCGACGCAGCCTTCGCCGGCGGCGTGCCTCCCGTCCCTGCCCGCCGGCGGCCGTCTCCGCCTCCGCCTGGCTCCACCACCCCGCGCTCCGCCGCGCCTCTGCAAGCGCGCCGGCAAACTCCGGGTTGTTACCATCAGATCAGCTCATAGTGGTGTGAGCAATGTATCTGTAGAAACCCCTCCTGACAATGAGGCATCCGTGACCGGTGCTGCTTACGGCTTCAGAGGAGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAATGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGGGCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATGTGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACAGCACACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGGGTGTCTGCATTTCTGTCAAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCATTCTCGATGAAATAGCATGGATAGGTCACACAAATCGACCCTCTCTGATATAGTTGTTGATGTGAATATAAACTGTTTACAAGGATCAACTACTCAACTAGTGATGCGCTGAAAAGTGAAAACTGAACA                     ]
[+] EMBL AK060943             [   TCCAGAGGAAGCCAAGAGATGGGCTCCGCTTCGCTGGCGACGCAGCCTTCGCCGGCGGCGTGCCTCCCGTCCCTGCCCGCCGGCGGCCGTCTCCGCCTCCGCCTGGCTCCACCACCCCGCGCTCCGCCGCGCCTCTGCAAGCGCGCCGGCAAACTCCGGGTTGTTACCATCAGATCAGCTCATAGTGGTGTGAGCAATGTATCTGTAGAAACCCCTCCTGACAATGAGGCATCCGTGACCGGTGCTGCTTACGGCTTCAGAGGAGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAATGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGGGCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATGTGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACAGCACACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGGGTGTCTGCATTTCTGTCAAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCATTCTCGATGAAATAGCATGGATAGGTCACACAAATCGACCCTCTCTGATATAGTTGTTGATGTGAATATAAACTGTTTACAAGGATCAACTACTCAACTAGTGATGCGCTGAAAAGTGAAAACTGAACATTTTT                ]
[+] EMBL CB659562             [                        GGCTCCGCTTCGCTGGCGACGCAGCCTTCGCCGGCGGCGTGCCTCCCGTCCCTGCCCGCCGGCGGCCGTCTCCGCCTCCGCCTGGCTCCACCACCCCGCGCTCCGCCGCGCCTCTGCAAGCGCGCCGGCAAACTCCGGGTTGTTACCATCAGATCAGCTCATAGTGGTGTGAGCAATGTATCTGTAGAAACCCCTCCTGACAATGAGGCATCCGTGACCGGTGCTGCTTACGGCTTCAGAGGAGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAATGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGGGCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATGTG                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB684990             [                                  gctcccttACGCAGCCTTCGCCGGCGGCGTGCCTCCCGTCCCTGCCCGCCGGCGGCCGTCTCCGCCTCCGCCTGGCTCCACCACCCCGCGCTCCGCCGCGCCTCTGCAAGCGCGCCGGCAAACTCCGGGTTGTTACCATCAGATCAGCTCATAGTGGTGTGAGCAATGTATCTGTAGAAACCCCTCCTGACAATGAGGCATCCGTGACCGGTGCTGCTTACGGCTTCAGAGGAGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAATGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGGGCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACCCCAGATGGCGGGAGGATCCTTCCAATTTCAAGGCCAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB659563             [                                                                                                                                                                                                                                                                                      GCTTACGAATGAGATGTT ACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAATGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGGGCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATGTGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACAGCACACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGGGTGTCTGCATTTCTGTCAAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCATTCTCGATGAAATAGCATGGATAGGTCACACAAATCGACCCTCTCTGATATAGTTGTTGATGTGAATATAAACTGTTT                                                                        ]
[-] EMBL CB684991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATGTGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACAGCACACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGGGTGTCTGCATTTCTGTCAAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCATTCTCGATGAAATAGCATGGATAGGTCACACAAATCGACCCTCTCTGATATAGTTGTTGATGTGAATATAAACTGTTTACAAGGATCAACTACTCAACTAGTGATGCGCTGAAAAGTGAAAACTGAACATTTTAAGGCCAGTCTAAGCAA]


>consensus_9243#0 AAGTCCAGAGGAAGCCAAGAGATGGGCTCCGCTTCGCTGGCGACGCAGCCTTCGCCGGCG GCGTGCCTCCCGTCCCTGCCCGCCGGCGGCCGTCTCCGCCTCCGCCTGGCTCCACCACCC CGCGCTCCGCCGCGCCTCTGCAAGCGCGCCGGCAAACTCCGGGTTGTTACCATCAGATCA GCTCATAGTGGTGTGAGCAATGTATCTGTAGAAACCCCTCCTGACAATGAGGCATCCGTG ACCGGTGCTGCTTACGGCTTCAGAGGAGCAACAACATCGCTTACGAATGAGATGTTAACT TTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGC GTACAGGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAGAAA TGTCGCGATGCCCTTGCGAACATGAAATTCGACGTTTGTTTCTCTAGTCCTATCTCACGG GCAAAGTCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGAT TCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGCGGATGCTAAGAAG GAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGC ATATACCCAGTTCGGAAGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTT ACTCCAGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGC ACCGCGCTAGGTCTTCCTCCTGAGAGGTTTCGTTCCATTGATGTGAACAATGGTGGCATG TGCGTCTTCACTGTAAACAAGCGAGGAGAGGCTATGCTTCAAGCCCTTAACATGACAGCA CACATGTATAGTGACCATACATACCAGTATTAGTTATCTGTTCTTCTCTTTTTTGGGGGG GTGTCTGCATTTCTGTCAAGTATATTAGCAGTTTAGCACACCCTGATTAGACAAACTTCA TTCTCGATGAAATAGCATGGATAGGTCACACAAATCGACCCTCTCTGATATAGTTGTTGA TGTGAATATAAACTGTTTACAAGGATCAACTACTCAACTAGTGATGCGCTGAAAAGTGAA AACTGAACATTTTTAGGCCAGTCTAAGCAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)