Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9261 cluster # 9261       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9261#0 length = 2554 sequences # 5  
consensus_9261#1 length = 800 sequences # 1  

consensusID : consensus_9261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2554
fasta sequence
                              [AGAGAGGGAGGGACCGCGCGGCGGCGCCGCCCCGGTGGAATCCCTGCCCTGATGTCGGCGACAGCGAAGGGCGGCAGCGATAGCTCCGCCGGAAGCTCCGGATCCACCCCCTCGTCGCCGGCGACAGGCAGGGGCGGCAGCGATAGCTCCGATGCCAACCAGCCCTCGCCGGTGAAGGAGCGGGGTGTTGTGCTGTCGGAGCTGCTCGGGCACATCCATGGGTACTACAAGGCTGCGCTCGGCCGGCTCCCGGTGGAGGAGACGCCGGCGCTCATCCCGCCCCTCCTTGACGCCGGCGTCTGCTTCGGCCTCATGGATCCCATCTCCAACATCATCGTCAACACCGTCTCCGAACCCCTCCTGCCCGACTGCACGGCGTCGGAGGAGGAAGAGGAGGATGGGAAGTCGAGGAAGAGGAAGAGGGGGAGAGACGAGGCAATTTTGTCCGAGATCGCCGCGGATGCCAGCTGCATCCGCTGCTTTCCTCCGAGGATGGGGCGGTGCGAGACCTCGCCGGAGCGGAGGAGGAACGTCCCCGTCGCGCAGCGCTCGCTCGAGGGCCTCGTCACCTTCCTCATCTGCTACTTCCGCCACCTCCCCGTCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCACCTCATCGAGTACACTCGGGGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACAGAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCAGCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCGATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTCTCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACTACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATACTCTGAGAACTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAAGCGATCGCGCGGCTTCCCAGGGATGATTTGCGCAGACGCTATCACCATAGCCTCCTCAAGGCAGGCCATTGCTTTGGTCCTGCTAATGACCGTGTCTCCAACATCATCCTCAACACCATCTGGTACGACACCACATTCCCTCCACATGAGGAGCTTAAGCTGGACATGATCTGCACCAACAGTCTCGTGCGCATTGAGTGCCGCTCCCTCAACGGCCTTCTTGCTTTCCTCCACAACCTCTTCCCTGCATTATCTGAACACGATGCCATGATGTACCTTTTCCACTCCAATGCTAACCTTGAACAAGTCACTTTTAGAGCAATGTGCGATCATGATATATCCTGCTCTCATGAGGATGCTTACAAGGCAGCAGCAGACGCGGCATGGCATCCTCATCCTGATGCTCAAGCTGAATTCGCTGTGTCAACCCATCCAATGCTGTTGCCCATTGACAAGCCATCGCTAGCGGTTAGCCGCACACTCACTTCCAATGAGGTGGAGCTCATTTCAAGATATTTTTCACAGAAATCATACCCTGCCAAATCTGTGCCATCAGTTCCTGAATTGGTTCCCAGAGCTGACGAGTTGGTCAAACGCAGCCAGCAAAATTTCATGGCTAATCAATATTTCATCTGCAGAAAGGTGAAAGCTGCATTGAAGAGATATGCAAAAGAAAAGGGAACCGAGTATGAACTTCATGTCATCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAGATATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAGACCAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAATGGTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGATTCTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGGAACATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGACAGTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGATGACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTTAGTTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAGAATGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGGATGTTTTGCAAGATTGTCAAGGGCATCTTGTTCCCCAGTGCTAAATTGCAATCTTATTTGGTAGGCTATGTTAATCAGTTATATGATGGTGAAATTTATTTGTCTATGCTGTTATGTTATATATTCATGTGCACACTTAAAAGACCAGATCCATTTTAATGTGCAATGCTAATCGCTTTGCAGCTAGTCTGCAAACTTATGTAATGCCTACTTAAAAGGA]

[+] EMBL AK065449             [AGAGAGGGAGGGACCGCGCGGCGGCGCCGCCCCGGTGGAATCCCTGCCCTGATGTCGGCGACAGCGAAGGGCGGCAGCGATAGCTCCGCCGGAAGCTCCGGATCCACCCCCTCGTCGCCGGCGACAGGCAGGGGCGGCAGCGATAGCTCCGATGCCAACCAGCCCTCGCCGGTGAAGGAGCGGGGTGTTGTGCTGTCGGAGCTGCTCGGGCACATCCATGGGTACTACAAGGCTGCGCTCGGCCGGCTCCCGGTGGAGGAGACGCCGGCGCTCATCCCGCCCCTCCTTGACGCCGGCGTCTGCTTCGGCCTCATGGATCCCATCTCCAACATCATCGTCAACACCGTCTCCGAACCCCTCCTGCCCGACTGCACGGCGTCGGAGGAGGAAGAGGAGGATGGGAAGTCGAGGAAGAGGAAGAGGGGGAGAGACGAGGCAATTTTGTCCGAGATCGCCGCGGATGCCAGCTGCATCCGCTGCTTTCCTCCGAGGATGGGGCGGTGCGAGACCTCGCCGGAGCGGAGGAGGAACGTCCCCGTCGCGCAGCGCTCGCTCGAGGGCCTCGTCACCTTCCTCATCTGCTACTTCCGCCACCTCCCCGTCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCACCTCATCGAGTACACTCGGGGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACAGAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCAGCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCGATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTCTCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACTACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATACTCTGAGAACTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAAGCGATCGCGCGGCTTCCCAGGGATGATTTGCGCAGACGCTATCACCATAGCCTCCTCAAGGCAGGCCATTGCTTTGGTCCTGCTAATGACCGTGTCTCCAACATCATCCTCAACACCATCTGGTACGACACCACATTCCCTCCACATGAGGAGCTTAAGCTGGACATGATCTGCACCAACAGTCTCGTGCGCATTGAGTGCCGCTCCCTCAACGGCCTTCTTGCTTTCCTCCACAACCTCTTCCCTGCATTATCTGAACACGATGCCATGATGTACCTTTTCCACTCCAATGCTAACCTTGAACAAGTCACTTTTAGAGCAATGTGCGATCATGATATATCCTGCTCTCATGAGGATGCTTACAAGGCAGCAGCAGACGCGGCATGGCATCCTCATCCTGATGCTCAAGCTGAATTCGCTGTGTCAACCCATCCAATGCTGTTGCCCATTGACAAGCCATCGCTAGCGGTTAGCCGCACACTCACTTCCAATGAGGTGGAGCTCATTTCAAGATATTTTTCACAGAAATCATACCCTGCCAAATCTGTGCCATCAGTTCCTGAATTGGTTCCCAGAGCTGACGAGTTGGTCAAACGCAGCCAGCAAAATTTCATGGCTAATCAATATTTCATCTGCAGAAAGGTGAAAGCTGCATTGAAGAGATATGCAAAAGAAAAGGGAACCGAGTATGAACTTCATGTCATCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAGATATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAGACCAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAATGGTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGATTCTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGGAACATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGACAGTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGATGACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTTAGTTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAGAATGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGGATGTTTTGCAAGATTGTCAAGGGCATCTTGTTCCCCAGTGCTAAATTGCAATCTTATTTGGTAGGCTATGTTAATCAGTTATATGATGGTGAAATTTATTTGTCTATGCTGTTATGTTATATATTCATGTGCACACTTAAAAGACCAGATCCATTTTAATGTGCAATGCTAATCGCTTTGCAGCTAGTCTGCAAACTTA                     ]
[+] EMBL CB653212             [                                                                                     CCGCCGGAAGCTCCGGATCCACCCCCTCGTCGCCGGCGACAGGCAGGGGCGGCAGCGATAGCTCCGATGCCAACCAGCCCTCGCCGGTGAAGGAGCGGGGTGTTGTGCTGTCGGAGCTGCTCGGGCACATCCATGGGTACTACAAGGCTGCGCTCGGCCGGCTCCCGGTGGAGGAGACGCCGGCGCTCATCCCGCCCCTCCTTGACGCCGGCGTCTGCTTCGGCCTCATGGATCCCATCTCCAACATCATCGTCAACACCGTCTCCGAACCCCTCCTGCCCGACTGCACGGCGTCGGAGGAGGAAGAGGAGGATGGGAAGTCGAGGAAGAGGAAGAGGGGGAGAGACGAGGCAATTTTGTCCGAGATCGCCGCGGATGCCAGCTGCATCCGCTGCTTTCCTCCGAGGATGGGGCGGTGCGAGACCTCGCCGGAGCGGAGGAGGAACGTCCCCGTCGCGCAGCGCTCGCTCGAGGGCCTCGTCACCTTCCTCATCTGCTACTTCCGCCACCTCCCCGTCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCACCTCATCGAGTACACTCGGGGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACAGAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCAGCCAGATCACTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB660472             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GACAAGCCATCGCTAGCGGTTAGCCGCACACTCACTTCCAATGAGGTGGAGCTCATTTCAAGATATTTTTCACAGAAATCATACCCTGCCAAATCTGTGCCATCAGTTCCTGAATTGGTTCCCAGAGCTGACGAGTTGGTCAAACGCAGCCAGCAAAATTTCATGGCTAATCAATATTTCATCTGCAGAAAGGTGAAAGCTGCATTGAAGAGATATGCAAAAGAAAAGGGAACCGAGTATGAACTTCATGTCATCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAGATATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAGACCAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAATGGTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGATTCTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGGAACATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGACAGTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGATGACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTTAGTTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAGAATGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGG                                                                                                                                                                                                                            ]
[-] EMBL CB653211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGAGTATGAACTTCATGTCATCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAGATATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAGACCAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAATGGTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGATTCTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGGAACATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGACAGTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGATGACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTTAGTTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAGAATGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGGATGTTTTGCAAGATTGTCAAGGGCATCTTGTTCCCCAGTGCTAAATTGCAATCTTATTTGGTAGGCTATGTTAATCAGTTATATGATGGTGAAATTTATTTGTGTATGCTGTTATGTTATATATTCATGTGCACACTTAAAAGACCAGATCCATTTTAATGTGCAATGCTAATCGAGGGGCAGCTAGTCTGCAAACTTATGTAATGCCTACTTAAAAGGA]
[-] EMBL CB660473             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAGATATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAGACCAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAATGGTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGATTCTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGGAACATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGACAGTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGATGACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTTAGTTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAGAATGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGGATGTTTTGCAAGATTGTCAAGGGCATCTTGTTCCCCAGTGCTAAATTGCAATCTTATTTGGTAGGGTATGTTAATCAGTTATATGATGGTGAAATTTATTTGTCTATGCTGTTATGTTATATATTCATGTGCCCAAATGAAAGACCAGATCCATTT                                                                ]


>consensus_9261#0 AGAGAGGGAGGGACCGCGCGGCGGCGCCGCCCCGGTGGAATCCCTGCCCTGATGTCGGCG ACAGCGAAGGGCGGCAGCGATAGCTCCGCCGGAAGCTCCGGATCCACCCCCTCGTCGCCG GCGACAGGCAGGGGCGGCAGCGATAGCTCCGATGCCAACCAGCCCTCGCCGGTGAAGGAG CGGGGTGTTGTGCTGTCGGAGCTGCTCGGGCACATCCATGGGTACTACAAGGCTGCGCTC GGCCGGCTCCCGGTGGAGGAGACGCCGGCGCTCATCCCGCCCCTCCTTGACGCCGGCGTC TGCTTCGGCCTCATGGATCCCATCTCCAACATCATCGTCAACACCGTCTCCGAACCCCTC CTGCCCGACTGCACGGCGTCGGAGGAGGAAGAGGAGGATGGGAAGTCGAGGAAGAGGAAG AGGGGGAGAGACGAGGCAATTTTGTCCGAGATCGCCGCGGATGCCAGCTGCATCCGCTGC TTTCCTCCGAGGATGGGGCGGTGCGAGACCTCGCCGGAGCGGAGGAGGAACGTCCCCGTC GCGCAGCGCTCGCTCGAGGGCCTCGTCACCTTCCTCATCTGCTACTTCCGCCACCTCCCC GTCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCAC CTCATCGAGTACACTCGGGGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACA GAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCA GCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCG ATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTC TCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACT ACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATACTCTGAGAA CTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAAGCGATCGCGCGGCTTCCCAGGG ATGATTTGCGCAGACGCTATCACCATAGCCTCCTCAAGGCAGGCCATTGCTTTGGTCCTG CTAATGACCGTGTCTCCAACATCATCCTCAACACCATCTGGTACGACACCACATTCCCTC CACATGAGGAGCTTAAGCTGGACATGATCTGCACCAACAGTCTCGTGCGCATTGAGTGCC GCTCCCTCAACGGCCTTCTTGCTTTCCTCCACAACCTCTTCCCTGCATTATCTGAACACG ATGCCATGATGTACCTTTTCCACTCCAATGCTAACCTTGAACAAGTCACTTTTAGAGCAA TGTGCGATCATGATATATCCTGCTCTCATGAGGATGCTTACAAGGCAGCAGCAGACGCGG CATGGCATCCTCATCCTGATGCTCAAGCTGAATTCGCTGTGTCAACCCATCCAATGCTGT TGCCCATTGACAAGCCATCGCTAGCGGTTAGCCGCACACTCACTTCCAATGAGGTGGAGC TCATTTCAAGATATTTTTCACAGAAATCATACCCTGCCAAATCTGTGCCATCAGTTCCTG AATTGGTTCCCAGAGCTGACGAGTTGGTCAAACGCAGCCAGCAAAATTTCATGGCTAATC AATATTTCATCTGCAGAAAGGTGAAAGCTGCATTGAAGAGATATGCAAAAGAAAAGGGAA CCGAGTATGAACTTCATGTCATCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAGAT ATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAGAC CAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAATG GTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGATT CTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGGAA CATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGACA GTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGATG ACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTTAG TTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAGAA TGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGGATGTTT TGCAAGATTGTCAAGGGCATCTTGTTCCCCAGTGCTAAATTGCAATCTTATTTGGTAGGC TATGTTAATCAGTTATATGATGGTGAAATTTATTTGTCTATGCTGTTATGTTATATATTC ATGTGCACACTTAAAAGACCAGATCCATTTTAATGTGCAATGCTAATCGCTTTGCAGCTA GTCTGCAAACTTATGTAATGCCTACTTAAAAGGA



consensusID : consensus_9261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 800
fasta sequence
                              [TCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCACCTCATCGAGTACACTCGGNGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACAGAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCAGCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCGATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTCTCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACTACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATCCTCTGAGAACTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAACGATCGCGCGGCTTCCANGGATGATTTGNCAGACGCTATCACATAGCCTCTCAGGCAGGCCATTGGTTGGCCTGCTAAGACCGGTCTCACATATCTTACACCATTTGTCGAACACATTCNTCCATGAGAGCTACTGGGATTACTGGCCACTGTCGGGCATTGTGCGTTCTTAAGCTTTGGTTCTTCAAACTTCCGGTTTGAACAAGCCGAGTCCTTCCTTAGGGCCCACACGCTTAAAAATGGAACAGATCGGCTTGGTCTCAGATAAACCGAGACCACTGGCGTTATCTGTATNTCACTGCCTGAGCCTCGTGGCCCTCTCGGGGGTTGAAATNGAAAACTC]

[+] EMBL AW155131             [TCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCACCTCATCGAGTACACTCGGNGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACAGAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCAGCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCGATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTCTCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACTACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATCCTCTGAGAACTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAACGATCGCGCGGCTTCCANGGATGATTTGNCAGACGCTATCACATAGCCTCTCAGGCAGGCCATTGGTTGGCCTGCTAAGACCGGTCTCACATATCTTACACCATTTGTCGAACACATTCNTCCATGAGAGCTACTGGGATTACTGGCCACTGTCGGGCATTGTGCGTTCTTAAGCTTTGGTTCTTCAAACTTCCGGTTTGAACAAGCCGAGTCCTTCCTTAGGGCCCACACGCTTAAAAATGGAACAGATCGGCTTGGTCTCAGATAAACCGAGACCACTGGCGTTATCTGTATNTCACTGCCTGAGCCTCGTGGCCCTCTCGGGGGTTGAAATNGAAAACTC]


>consensus_9261#1 TCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCACC TCATCGAGTACACTCGGNGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACAG AGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCAG CCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCGA TGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTCT CAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACTA CATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATCCTCTGAGAAC TCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAACGATCGCGCGGCTTCCANGGATG ATTTGNCAGACGCTATCACATAGCCTCTCAGGCAGGCCATTGGTTGGCCTGCTAAGACCG GTCTCACATATCTTACACCATTTGTCGAACACATTCNTCCATGAGAGCTACTGGGATTAC TGGCCACTGTCGGGCATTGTGCGTTCTTAAGCTTTGGTTCTTCAAACTTCCGGTTTGAAC AAGCCGAGTCCTTCCTTAGGGCCCACACGCTTAAAAATGGAACAGATCGGCTTGGTCTCA GATAAACCGAGACCACTGGCGTTATCTGTATNTCACTGCCTGAGCCTCGTGGCCCTCTCG GGGGTTGAAATNGAAAACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9261#0      AGAGAGGGAGGGACCGCGCGGCGGCGCCGCCCCGGTGGAATCCCTGCCCTGATGTCGGCG 60
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      ACAGCGAAGGGCGGCAGCGATAGCTCCGCCGGAAGCTCCGGATCCACCCCCTCGTCGCCG 120
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GCGACAGGCAGGGGCGGCAGCGATAGCTCCGATGCCAACCAGCCCTCGCCGGTGAAGGAG 180
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      CGGGGTGTTGTGCTGTCGGAGCTGCTCGGGCACATCCATGGGTACTACAAGGCTGCGCTC 240
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GGCCGGCTCCCGGTGGAGGAGACGCCGGCGCTCATCCCGCCCCTCCTTGACGCCGGCGTC 300
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TGCTTCGGCCTCATGGATCCCATCTCCAACATCATCGTCAACACCGTCTCCGAACCCCTC 360
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      CTGCCCGACTGCACGGCGTCGGAGGAGGAAGAGGAGGATGGGAAGTCGAGGAAGAGGAAG 420
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AGGGGGAGAGACGAGGCAATTTTGTCCGAGATCGCCGCGGATGCCAGCTGCATCCGCTGC 480
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TTTCCTCCGAGGATGGGGCGGTGCGAGACCTCGCCGGAGCGGAGGAGGAACGTCCCCGTC 540
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GCGCAGCGCTCGCTCGAGGGCCTCGTCACCTTCCTCATCTGCTACTTCCGCCACCTCCCC 600
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GTCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCAC 660
consensus_9261#1      -TCTCGGAGGCCTTGCACTACCTCCTGCTCACCAAGGCCGACCTGCTCGCCGCCGTCCAC 59
                       ***********************************************************

consensus_9261#0      CTCATCGAGTACACTCGGGGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACA 720
consensus_9261#1      CTCATCGAGTACACTCGGNGAATTGGAGGCAGGCTGTTCCCGATCTCCTCCCCAACCACA 119
                      ****************** *****************************************

consensus_9261#0      GAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCA 780
consensus_9261#1      GAGGTTGCCCTCCGCTGCGCTGCCATCTCCGCCTCGCACCCAGACCCGCCAGCATTTGCA 179
                      ************************************************************

consensus_9261#0      GCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCG 840
consensus_9261#1      GCCAGATCACTCTCGCTAGCTTCGCGTCTTGGAGATCAGCCTCCTCGCAGATTCTCACCG 239
                      ************************************************************

consensus_9261#0      ATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTC 900
consensus_9261#1      ATGGATGCTACCTGTCTCTTGATGCCATCCACCGCCTCCACGAATTTCTCCAGGAACCTC 299
                      ************************************************************

consensus_9261#0      TCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACT 960
consensus_9261#1      TCAAGGAGCCACCCGACTTCCCGAAACCTGTCCGGCAGGCGGCTCTTCGCTTGAATCACT 359
                      ************************************************************

consensus_9261#0      ACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATACTCTGAGAA 1020
consensus_9261#1      ACATCAAAGGAATCAGCAGCTTGAACAAGTTCCCCCATGAATTCACAGATCCTCTGAGAA 419
                      ************************************************** *********

consensus_9261#0      CTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAAGCGATCGCGCGGCTTCCCAGGG 1080
consensus_9261#1      CTCTTCTCCTGGAGAAAATCCATGTGTTGTACCTCAAA-CGATCGCGCGGCTTCC-ANGG 477
                      ************************************** **************** * **

consensus_9261#0      ATGATTTGCGCAGACGCTATCACCATAGCCTCCTCAAGGCAGGCCATTGCTTTGGTCCTG 1140
consensus_9261#1      ATGATTTGN-CAGACGCTATCAC-ATAGCCTCTC--AGGCAGGCCATTGGTTGG--CCTG 531
                      ********  ************* ********    ************* ** *  ****

consensus_9261#0      CTAATGACCGTGTCTCCAACATCATCCTCAACACCATCTGGTACGACACCACATTCCCTC 1200
consensus_9261#1      CTAA-GACCG-GTCTCACATATCTT-----ACACCATTTGTCG----AACACATTCNTC- 579
                      **** ***** *****  * *** *     ******* **       * *******    

consensus_9261#0      CACATGAGGAGCTTAAGCTGGACATGATCTGCACCAACAGTC-TCGTGCGCA-TTGAGTG 1258
consensus_9261#1      --CATGAG-AGCT---ACTGGGATTACTGGCCACTGTCGGGCATTGTGCGTTCTTAAGCT 633
                        ****** ****    ****   *  *   ***   * * * * *****   ** **  

consensus_9261#0      CCGCTCCCTCAACGGCCTTCTTGCTTTCCTCCACAACCTCTTCCCTGCATTATCTGAACA 1318
consensus_9261#1      TTGGTTCTTCAAA---CTTCCGGTTTGAACAAGCCGAGTCCTTCCT-TAGGGCCCACACG 689
                        * * * ****    ****  * **       *    ** * ***  *    *   ** 

consensus_9261#0      CGATGCCATGATGTACCTTTTCCACTCCAATGCTAACCTTGAACAAGTCACTTTTAGAGC 1378
consensus_9261#1      CTTAAAAATGGAACAGATCGGCTTGGTCTCAGATAAACCGAGACCACTGGCGTTATCTGT 749
                      *      ***    *  *   *     *   * *** *    ** * *  * **    * 

consensus_9261#0      AATGTGCGATCATGATATATCCTGCTCTCATGAGGATGCTTACAAGGCAGCAGCAGACGC 1438
consensus_9261#1      ATNTCACTGCC-TGAGCCTCGTGGCCCTCTCGGGGGTTGAAATNGAAAACTC-------- 800
                      *     *   * ***        ** ***  * ** *    *      *           

consensus_9261#0      GGCATGGCATCCTCATCCTGATGCTCAAGCTGAATTCGCTGTGTCAACCCATCCAATGCT 1498
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GTTGCCCATTGACAAGCCATCGCTAGCGGTTAGCCGCACACTCACTTCCAATGAGGTGGA 1558
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GCTCATTTCAAGATATTTTTCACAGAAATCATACCCTGCCAAATCTGTGCCATCAGTTCC 1618
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TGAATTGGTTCCCAGAGCTGACGAGTTGGTCAAACGCAGCCAGCAAAATTTCATGGCTAA 1678
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TCAATATTTCATCTGCAGAAAGGTGAAAGCTGCATTGAAGAGATATGCAAAAGAAAAGGG 1738
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AACCGAGTATGAACTTCATGTCATCTGCGGTACAAATTTTGATGTACCTGAGAATGGCAG 1798
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      ATATGGTTACTTTCGGAATCGCAAAGGATTTCCATATGCTCATGTGAATTTTCTGGCAAG 1858
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      ACCAAAGGGTTCACAGCGTGATAACACTGCTCCTAGTCTTTTCTTCCTGGAGTGCAGCAA 1918
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TGGTGAAGAAGATATTGGTACACTATTTTCATGCTGCGCTGAACTAGAGTCGCCTACAGA 1978
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TTCTGGTAGGTGCTTTCATTGTGAGTGCAAAGGAACTAAGATTGTGCATCCAGCTATTGG 2038
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AACATACCGAGGGCGTGAAACAGACTTCGAGGAAATGTCTTGTGGGAAACAGGAAATTGA 2098
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      CAGTAAAGGACTTATTATCTCTGAGAAGATGGCTATTGAGTTTGTGGGTTTATGTGAGGA 2158
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TGACAGTATCTATTTTGATCCTTCTAAGGACTATGACTTCGCTCTTGGCTTGAACAACTT 2218
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AGTTAGGGAGGATGATGAAGCTCTTGAAGAGCTTCACAGAGACATTGCCGAGTGCGAGAG 2278
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AATGAAAGTCTGTGACATGTCCTGTGAGCCAGATCTGTTGGCGGAAATCACAGAGGATGT 2338
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TTTGCAAGATTGTCAAGGGCATCTTGTTCCCCAGTGCTAAATTGCAATCTTATTTGGTAG 2398
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GCTATGTTAATCAGTTATATGATGGTGAAATTTATTTGTCTATGCTGTTATGTTATATAT 2458
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TCATGTGCACACTTAAAAGACCAGATCCATTTTAATGTGCAATGCTAATCGCTTTGCAGC 2518
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TAGTCTGCAAACTTATGTAATGCCTACTTAAAAGGA 2554
consensus_9261#1      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)