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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2135 fasta sequence
[AACAAATACTAGTCACCGTCACGTTCGCTAGAGCAGAGCACGCGCCCACAAATACGAGTAAATTTCCACGCTGCGATTCTGCGAACAAGAAACCCCCACACTTCTCCCGTTCTCCTGGAGGAAGACGACACCCAAAAACTAAGATTGGGTAGCAATCGCTTCAAAGAAGCCAAGAGCGAGTCCACTTCGTAATTCGTCACCTCTGCTGAAAATTTCACAACACGGCGAAGGAGTCCTTCTTGAGACGGAGGAGCAGCAGCGACAGCGACAGCCATAGTGAGAAATTGCAAGATGGAGGTATCACTGCCATTGCTGATCGGCGTCGTCCTCGCCTTCCTCCTGCTCTTCGTCCTCGTCAACATCAAGAACTCATGCCGCTCCTGGTGGCCTCCGCCGGAGAAGGAGAAGAAGAAGCTGCGGCTGCCGCCGGGGCCGTGGCAGCTGCCGCTCGTCGGGAGCCTGCACCACGTCCTGCTGTCGCGCCACGCCGACCTGCCACACAGGGCGCTGCGCGAGCTCGCCGGCAAGTACGGCCCGCTCATGATGCTCCGCTTCGGTGCCGTGCCGACGCTCGTCGTGTCGTCGGCCGAGGCCGCCAGGGAGGTGCTCAAGACGTACGACGCCGCCTTCGCCAGCCGCTACCTCACGCCGACCCTGGCCGTCCTCAGCCGCGGCGGCCGCGACATCCTCTTCTCCCCCTACTGCGACCTGTGGCGCCAGCTCCGGAGGATCTGCGTGCACGAGCTCCTCAGCGCGCGCCGCGTCCAGTCGCTCCGCCACGGGCGCGAGGACGAGGCGGCGCGCCTCGTCCGCTCCGTCGCCGCCGAGTGCGCCGCCCGCGGCGGCGCAGCCGTTGTCAACGTCGGCGAGCTGATCTCCCGCGCGGTGAACGACTCCGTCGTGCGATCCGCCGTCGGCGCCCGGTCGGCGCGGCGCGACGAGTTCGTGCGCGAGCTCGACGAGTCGGTGAGGCTCTCCGGCGGGTTCAACCTGGCCGACCTGTACCCGTCGTCGTGGCTGGCGCGCCGGCTCAGCGGCGCGATGCGGGAGACGGAGCGGTGCAATCGGAGCTTGATGGCCATCATGGACGACATCATCCGGGAGCACGGCGACGGCGAGGAAGACCTCCTCGGCGTACTCCTCAGATTGCAGAGGAACGGCGATGTGCAGTGTCCCCTCACCACCGATTTGATCACTAACGTCGTCTTGGACATGTTTGCGGCTGGGAGTGAAACCTCGTCTACGACACTTGAGTGGGCCTTAACAGAGCTAGTAAGGAACCCACACATCATGGAAAAGGCCCAATCAGAGGTGCGGGAGATATTTAGGGGAGAAAACAAGCTAACAGAGGAAATGATGGACAAGCTAAGCTACCTCCGCTTGGTGATTCGGGAAACACTCCGACTACATTTACCGGTACCATTCCTTCTTCCTAGGCAGTGCCGTGAGCCATGCTCGGTTATGGGCTATGACATACCAGTGGGAACTAAAGTGCTTGTGAACGCTTGGGCCATAGCTAGGGACAATCAGTATTGGGATGATCCCGAGGTATTCAAACCAGAAAGGTTCGAGAACAATCGTGTCGACTTTAAGGGTATAGATTTCGAGTTCATTCCTTTCGGTGCTGGGAGGAGGATATGCCCTGGGATTGCACTTGGGCTTGCCAATATAGAGCTCATGCTTGCCAGCCTCCTATACCATTTTGACTGGGAGTTCCTCGATCGAGACAGGAATGACGAGATTGACTTGTCCGAGACATTTGGTATCACTGCAAAGAGGAAGTCGAAGCTCATGGTGTATGCTACACAACGTATTCCATGTTTGGGTTAACTGTTTTGTGTATGTGAACTCTTGCATAACTAGGCACGTTCTCCATGCTCTTATGGCTCCTCTTTATCTGGTAGACTAAACTTAATTCTCTGGTTACTTATAGATAATGTCACCCTAGGGTGAGTGATGTGAAATGTATTGATTTGAACTAGATAGTACCAAAAATATGTAATTTTGATATATGATAAAAGTGTGCACCATTTTATGATGACAATTAATTATTTTGTAAGTATACCTCTCTCCGAATAAATCTAAACCTGTGTAAATTAGTATGTCTTTGTACATTATCACTATTATTCAGTAGC]
[+] EMBL AK111441 [AACAAATACTAGTCACCGTCACGTTCGCTAGAGCAGAGCACGCGCCCACAAATACGAGTAAATTTCCACGCTGCGATTCTGCGAACAAGAAACCCCCACACTTCTCCCGTTCTCCTGGAGGAAGACGACACCCAAAAACTAAGATTGGGTAGCAATCGCTTCAAAGAAGCCAAGAGCGAGTCCACTTCGTAATTCGTCACCTCTGCTGAAAATTTCACAACACGGCGAAGGAGTCCTTCTTGAGACGGAGGAGCAGCAGCGACAGCGACAGCCATAGTGAGAAATTGCAAGATGGAGGTATCACTGCCATTGCTGATCGGCGTCGTCCTCGCCTTCCTCCTGCTCTTCGTCCTCGTCAACATCAAGAACTCATGCCGCTCCTGGTGGCCTCCGCCGGAGAAGGAGAAGAAGAAGCTGCGGCTGCCGCCGGGGCCGTGGCAGCTGCCGCTCGTCGGGAGCCTGCACCACGTCCTGCTGTCGCGCCACGCCGACCTGCCACACAGGGCGCTGCGCGAGCTCGCCGGCAAGTACGGCCCGCTCATGATGCTCCGCTTCGGTGCCGTGCCGACGCTCGTCGTGTCGTCGGCCGAGGCCGCCAGGGAGGTGCTCAAGACGTACGACGCCGCCTTCGCCAGCCGCTACCTCACGCCGACCCTGGCCGTCCTCAGCCGCGGCGGCCGCGACATCCTCTTCTCCCCCTACTGCGACCTGTGGCGCCAGCTCCGGAGGATCTGCGTGCACGAGCTCCTCAGCGCGCGCCGCGTCCAGTCGCTCCGCCACGGGCGCGAGGACGAGGCGGCGCGCCTCGTCCGCTCCGTCGCCGCCGAGTGCGCCGCCCGCGGCGGCGCAGCCGTTGTCAACGTCGGCGAGCTGATCTCCCGCGCGGTGAACGACTCCGTCGTGCGATCCGCCGTCGGCGCCCGGTCGGCGCGGCGCGACGAGTTCGTGCGCGAGCTCGACGAGTCGGTGAGGCTCTCCGGCGGGTTCAACCTGGCCGACCTGTACCCGTCGTCGTGGCTGGCGCGCCGGCTCAGCGGCGCGATGCGGGAGACGGAGCGGTGCAATCGGAGCTTGATGGCCATCATGGACGACATCATCCGGGAGCACGGCGACGGCGAGGAAGACCTCCTCGGCGTACTCCTCAGATTGCAGAGGAACGGCGATGTGCAGTGTCCCCTCACCACCGATTTGATCACTAACGTCGTCTTGGACATGTTTGCGGCTGGGAGTGAAACCTCGTCTACGACACTTGAGTGGGCCTTAACAGAGCTAGTAAGGAACCCACACATCATGGAAAAGGCCCAATCAGAGGTGCGGGAGATATTTAGGGGAGAAAACAAGCTAACAGAGGAAATGATGGACAAGCTAAGCTACCTCCGCTTGGTGATTCGGGAAACACTCCGACTACATTTACCGGTACCATTCCTTCTTCCTAGGCAGTGCCGTGAGCCATGCTCGGTTATGGGCTATGACATACCAGTGGGAACTAAAGTGCTTGTGAACGCTTGGGCCATAGCTAGGGACAATCAGTATTGGGATGATCCCGAGGTATTCAAACCAGAAAGGTTCGAGAACAATCGTGTCGACTTTAAGGGTATAGATTTCGAGTTCATTCCTTTCGGTGCTGGGAGGAGGATATGCCCTGGGATTGCACTTGGGCTTGCCAATATAGAGCTCATGCTTGCCAGCCTCCTATACCATTTTGACTGGGAGTTCCTCGATCGAGACAGGAATGACGAGATTGACTTGTCCGAGACATTTGGTATCACTGCAAAGAGGAAGTCGAAGCTCATGGTGTATGCTACACAACGTATTCCATGTTTGGGTTAACTGTTTTGTGTATGTGAACTCTTGCATAACTAGGCACGTTCTCCATGCTCTTATGGCTCCTCTTTATCTGGTAGACTAAACTTAATTCTCTGGTTACTTATAGATAATGTCACCCTAGGGTGAGTGATGTGAAATGTATTGATTTGAACTAGATAGTACCAAAAATATGTAATTTTGATATATGATAAAAGTGTGCACCATTTTATGATGACAATTAATTATTTTGTAAGTATACCTCTCTCCGAATAAATCTAAACCTGTGTAAATTAGTATGTCTTTGTACATTATCACTATTATTCAGTAGC]
consensusID : consensus_9271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1793 fasta sequence
[TACTCTTCCCGTGCTACGGTAGCGAAAGGAAAGAGACGCAAATGGAGATGACCCTGCCATTGCTCGGCGCCGCCGTCGTCCTCGCCGCGTTCCTCCTCTTCTTCCTCGTCAAGAACAACCGTTGCTGCTGGTCGCCGGCGGCAGAGAGGCGGCTGCGGTTGCCGCCGGGGCCGTGGCGGCTGCCGCTCGTCGGGAGCCTGCACCACGTCCTGCTGTCGCGCCACGGCGACCTGCCCCACCGGGCGCTGCGCGAGCTCGCCGGGAGGTACGGCGCGCTCATGCTGCTCCGGTTCGGCGCCGTGCCGACGCTCGTCGTGTCGTCGGCGGAGGCGGCCAGGGAGGTGCTCAAGACGCACGACGCGTGCTTCGCCAGCCGCCACATGACGCCCACGCTCGCCGTCTTCACCCGCGGCGGCCGGGACATCCTCTTCTCCCCCTACGGCGACCTGTGGCGCCAGCTCCGGAGGATCTGCGTGCTCGAGCTCTTCAGCGCGCGCCGCGTGCAGTCGCTGCGCCACGTCCGCGAGGACGAGGCGGCGCGCCTCGTCCGCGCCGTCGCCGAAGAGTGCGCCATAGGCGGCGGCGGCGGCGCTGTGGTCCCCATCGGCGACATGATGTCCCGCATGGTGAACGACTCCGTCGTGCGCTCCGCCATCGGGGGCCGGTGCGCGCGGCGCGACGAGTTCCTCCGCGAGCTCGAGGTCTCCGTCAGGCTCACCGGCGGGTTCAACCTGGCCGACCTGTACCCGTCGTCGTCGCTGGCGCGCTGGCTCAGCGGCGCGCTCCGGGAGACCGAGCAGTGCAACCGGAGAGTGCGCGCCATCATGGACGACATCATCCGCGAGCGCGCTGCAGGCAAGGACGACGGCGACGGCGAGGACGACCTCCTCGGCGTCCTGCTCAGGCTGCAGAAGAACGGCGGCGTGCAGTGTCCCCTCACCACCGACATGATCGCCACCGTCATCATGGAAATATTTTCGGCCGGGAGCGAGACAGCATCAACAACGCTTGAGTGGGCAATATCGGAGCTAGTGAGAAACCCAAAAGTCATGGATAAGGCCCAATCAGAGGTCAGGAAATTGTTCGAGGGACAAGACAATCTAACCGAGGACGACATGAGCAGGCTAAGCTACCTTCACCTGGTTATACGGGAAACACTTCGCCTACATGCGCCAGCACCATTCCTTCTACCTCGAGAATGCCGTGAGCAGTGCAACGTCATGGGCTACGACATAACCGAAGGAACTCGAGTGCTTGTAAATGCTTGGGCCATTGCAAGGGATACTAGGTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTCAACGCGAATCTCGTTGATTTCAAGGGTAATGATTTCGAGTATATCCCTTTTGGCTCCGGTAGGAGGGTGTGTCCTGGGATAA-CACTTGGGCTAACTAGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACCACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGATATGTCGGAGGCATTCGGGATCACGGTGCGCAGGAAATCGAAGCTTGTGTTGCACGCTACGCCACGTGTTCCGTGTTTGCATTAACAGTGGTTCGATGCTTTCGCACGTGTATAGACGATGCATGTTATATTTGCAGGATTGTATATTGAAATACTTAAGATTCTTATGATGGAGAAACTACTCCCATCTGGTCATAAAATGCTTCACTTTCATGTATTATCAAATGGACTAGTTTTAAGTTTCGAAGATAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC]
[+] EMBL AK069017 [TACTCTTCCCGTGCTACGGTAGCGAAAGGAAAGAGACGCAAATGGAGATGACCCTGCCATTGCTCGGCGCCGCCGTCGTCCTCGCCGCGTTCCTCCTCTTCTTCCTCGTCAAGAACAACCGTTGCTGCTGGTCGCCGGCGGCAGAGAGGCGGCTGCGGTTGCCGCCGGGGCCGTGGCGGCTGCCGCTCGTCGGGAGCCTGCACCACGTCCTGCTGTCGCGCCACGGCGACCTGCCCCACCGGGCGCTGCGCGAGCTCGCCGGGAGGTACGGCGCGCTCATGCTGCTCCGGTTCGGCGCCGTGCCGACGCTCGTCGTGTCGTCGGCGGAGGCGGCCAGGGAGGTGCTCAAGACGCACGACGCGTGCTTCGCCAGCCGCCACATGACGCCCACGCTCGCCGTCTTCACCCGCGGCGGCCGGGACATCCTCTTCTCCCCCTACGGCGACCTGTGGCGCCAGCTCCGGAGGATCTGCGTGCTCGAGCTCTTCAGCGCGCGCCGCGTGCAGTCGCTGCGCCACGTCCGCGAGGACGAGGCGGCGCGCCTCGTCCGCGCCGTCGCCGAAGAGTGCGCCATAGGCGGCGGCGGCGGCGCTGTGGTCCCCATCGGCGACATGATGTCCCGCATGGTGAACGACTCCGTCGTGCGCTCCGCCATCGGGGGCCGGTGCGCGCGGCGCGACGAGTTCCTCCGCGAGCTCGAGGTCTCCGTCAGGCTCACCGGCGGGTTCAACCTGGCCGACCTGTACCCGTCGTCGTCGCTGGCGCGCTGGCTCAGCGGCGCGCTCCGGGAGACCGAGCAGTGCAACCGGAGAGTGCGCGCCATCATGGACGACATCATCCGCGAGCGCGCTGCAGGCAAGGACGACGGCGACGGCGAGGACGACCTCCTCGGCGTCCTGCTCAGGCTGCAGAAGAACGGCGGCGTGCAGTGTCCCCTCACCACCGACATGATCGCCACCGTCATCATGGAAATATTTTCGGCCGGGAGCGAGACAGCATCAACAACGCTTGAGTGGGCAATATCGGAGCTAGTGAGAAACCCAAAAGTCATGGATAAGGCCCAATCAGAGGTCAGGAAATTGTTCGAGGGACAAGACAATCTAACCGAGGACGACATGAGCAGGCTAAGCTACCTTCACCTGGTTATACGGGAAACACTTCGCCTACATGCGCCAGCACCATTCCTTCTACCTCGAGAATGCCGTGAGCAGTGCAACGTCATGGGCTACGACATAACCGAAGGAACTCGAGTGCTTGTAAATGCTTGGGCCATTGCAAGGGATACTAGGTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTCAACGCGAATCTCGTTGATTTCAAGGGTAATGATTTCGAGTATATCCCTTTTGGCTCCGGTAGGAGGGTGTGTCCTGGGATAA CACTTGGGCTAACTAGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACCACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGATATGTCGGAGGCATTCGGGATCACGGTGCGCAGGAAATCGAAGCTTGTGTTGCACGCTACGCCACGTGTTCCGTGTTTGCATTAACAGTGGTTCGATGCTTTCGCACGTGTATAGACGATGCATGTTATATTTGCAGGATTGTATATTGAAATACTTAAGATTCTTATGATGGAGAAACTACTCCCATCTGGTCATAAAATGCTTCACTTTCATGTATTATCAAATGGACTAGTTTTAAG ]
[-] EMBL AW155583 [ CCATTGCAAGGGATACTAGGTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTCAACGCGAATCTCGTTGATTTCAAGGGTAATGATTTCGAGTATATCCCTTTTGGCTCCGGTAAGAAGGTGGGTTCTTGGAAAACCACTTGGGCTAAATAGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACCACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGATATGTCGGAGGCATTCGGGATCACGGTGCGCAGGAAATCGAAGCTTGTGTTGCACGCTACGCCACGTGTTCCGTGTTTGCATTAACAGTGGTTCGATGCTTTCGCACGTGTATAGACGATGCATGTTATATTTGCAGGATTGTATATTGAAATACTTAAGATTCTTATGATGGAGAAACTACTCCCATCTGGTCATAAAATGCTTCACTTTCATGTATTATCAAATGGACTAGTTTTAAGTTTCGAAGATAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTC]
consensusID : consensus_9271#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 558 fasta sequence
[GGGCTACGACATAA--CCG-AAGGAACT-CG-AGT-GCTTG-TAAA-TG-CTTGGCCACTTGCAAGGGATACTAGGTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTC-ACGCGAATCTCGTTGATTTCAAGGGTAATTATTTCGAGTATATCCCTTTTGGCTCCGGTAGGAGGGTGTGTCCTGGGATAACACTTGGGCTAACTAGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACTACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGATATGTCGGAGGCA-TTCGGGATCACCGGTGCGCAGGTAAATCGAAGCTTGT--GTTGCACGCTACGCCACGTGTTCCGTGTTTGCATTAACAGTGGTTCGATGCTTTCGCACGTGTATAGACGATGCATGTTATATTTGGCAGGATTGTAGTATTGAAATACTTAAGATTCTTATGATAATGCTATTTAATTATAGATGGAGAAACTACTCCCA-TCTGGCCATAAAATGCTTCACTTTCATGTATTATCAAATGNNACCTAGTTTTAAGTTTCGAAGATA]
[+] EMBL BQ906334 [GGGCTACGACATAA CCG AAGGAACT CG AGT GCTTG TAAA TG CTTGGCCACTTGCAAGGGATACTAGGTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTC ACGCGAATCTCGTTGATTTCAAGGGTAATTATTTCGAGTATATCCCTTTTGGCTCCGGTAGGAGGGTGTGTCCTGGGATAACACTTGGGCTAACTAGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACTACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGATATGTCGGAGGCA TTCGGGATCACCGGTGCGCAGGTAAATCGAAGCTTGT GTTGCACGCTACGCCACGTGTTCCGTGTTTGCATTAACAGTGGTTCGATGCTTTCGCACGTGTATAGACGATGCATGTTATATTTGGCAGGATTGTAGTATTGAAATACTTAAGATTCTTATGATAATGCTATTTAATTATAGATGGAGAAACTACTCCCA TCTGGCCATAAAATGCTTCACTTTCATGTATTATCAAATGNNACCTAGTTTTAAGTTTCGAAGATA]
[+] EMBL BM039053 [ CATAACCCCGAAAGGAACTCCGAAGTGGCTTGTTAAATTGCCTTGGCC CTTGCAAGGGATACTA GTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTCAACGCGAATCTCGTTGATTTCAAGGGTAATTATTTCGAGTATATCCCTTTTGGCTCCGGTAGGAGGGTGTGTCCTGGGATAACACTTGGGCTAACTAGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACTACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGATATGTCGGAGGCACTTCGGGATCA CGGTGCGCAGG AAATCGAAGCTTGTCNCTTGCACGCTACGCCACGTGTTCCGTGTTTGCATTAACAGTGGTTCGATGCTTTCGCACGTGTATAGACGATGCATGTTATATTT GCAGGATTGTA TATTGAAATACTTAAGATTCTTATGATAATGCTATTTAATTATAGATGGAGAAACTACTCCCACTCTGGCCATAAAAaaaa ]
consensusID : consensus_9271#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[AATCCGCAAGGNACCTCGACGCTGCTTGTAAATGCTTGGGCCACTTGCCAAGGGATACTAGGCTCATTCGNGGAGGATCCCGAGATTCTTTCAAACCAGAGAGTCTTCAACCGCGAATGCATCCGCTTGATCTTCCAACGGGTAATTATTTCGAGTATATCCCTTTTGGCTCCCCGTATGGAGGGTGTTGTCCTGGGATCAACACTTGGGCTAACTAGTATGGACGCTTGTNGCTTGCAAGTTTGCTTTACCTACTTCCGACTTGGGAGCTCCCAGTGTGGCAACGACGGTGTGAACGAGATTGACTATGGTCGGAAGGCATTCAGGGATCATCGGTGCGCACGGAAATTCGAAGCTTGTGTTGCACGCTATCGCCACGTGTTCCGTGTTTTGCATTAACAGTGGTTCGATGCTTTACGCACGTGTACTAGACGATGCATGTTATATTTGCAGGATTGTATATTGAAATACTTAAGATTCTTATGATTATGCTATTTAATTATAGATGGAGAAACTACTCCCATCTGGCCATAAAAAA]
[+] EMBL BQ906735 [AATCCGCAAGGNACCTCGACGCTGCTTGTAAATGCTTGGGCCACTTGCCAAGGGATACTAGGCTCATTCGNGGAGGATCCCGAGATTCTTTCAAACCAGAGAGTCTTCAACCGCGAATGCATCCGCTTGATCTTCCAACGGGTAATTATTTCGAGTATATCCCTTTTGGCTCCCCGTATGGAGGGTGTTGTCCTGGGATCAACACTTGGGCTAACTAGTATGGACGCTTGTNGCTTGCAAGTTTGCTTTACCTACTTCCGACTTGGGAGCTCCCAGTGTGGCAACGACGGTGTGAACGAGATTGACTATGGTCGGAAGGCATTCAGGGATCATCGGTGCGCACGGAAATTCGAAGCTTGTGTTGCACGCTATCGCCACGTGTTCCGTGTTTTGCATTAACAGTGGTTCGATGCTTTACGCACGTGTACTAGACGATGCATGTTATATTTGCAGGATTGTATATTGAAATACTTAAGATTCTTATGATTATGCTATTTAATTATAGATGGAGAAACTACTCCCATCTGGCCATAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 ------------------------------------------------------------
consensus_9271#0 AACAAATACTAGTCACCGTCACGTTCGCTAGAGCAGAGCACGCGCCCACAAATACGAGTA 60
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 ------------------------------------------------------------
consensus_9271#0 AATTTCCACGCTGCGATTCTGCGAACAAGAAACCCCCACACTTCTCCCGTTCTCCTGGAG 120
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 ------------------------------------------------------------
consensus_9271#0 GAAGACGACACCCAAAAACTAAGATTGGGTAGCAATCGCTTCAAAGAAGCCAAGAGCGAG 180
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 ------------------------------------------------------------
consensus_9271#0 TCCACTTCGTAATTCGTCACCTCTGCTGAAAATTTCACAACACGGCGAAGGAGTCCTTCT 240
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 -TACTCTTCCCGTGCTACGGTAGCGAAAGGAAAGAGACGCAAATGGAGATGACCCTGCCA 59
consensus_9271#0 TGAGACGGAGGAGCAGCAGCGACAGCGACAGCCATAGTGAGAAATTGCAAGATGGAGGTA 300
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 TTGCTCGGCGCCGCCGTCGTCCTCGCCGCGTTCCTCCTCTTCTTCCTCGTCAAGAACAAC 119
consensus_9271#0 TCACTGCCATTGCTGATCGGCGTCGTCCTCGCCTTCCTCCTGCTCTTCGTCCTCGTCAAC 360
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CGTTGCTGCTGGTCGCCGGCGGCAGAGAGGCGGCTGCGGTTGCCGCCGGGGCCGTGGCGG 179
consensus_9271#0 ATCAAGAACTCATGCCGCTCCTGGTGGCCTCCGCCGGAGAAGGAGAAGAAGAAGCTGCGG 420
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CTGCCGCTCGTCGGGAGCCTGCACCACGTCCTGCTGTCGCGCCACGGCGACCTGCCCCAC 239
consensus_9271#0 CTGCCGCCGGGGCCGTGGCAGCTGCCGCTCGTCGGGAGCCTGCACCACGTCCTGCTGTCG 480
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CGGGCGCTGCGCGAGCTCGCCGGGAGGTACGGCGCGCTCATGCTGCTCCGGTTCGGCGCC 299
consensus_9271#0 CGCCACGCCGACCTGCCACACAGGGCGCTGCGCGAGCTCGCCGGCAAGTACGGCCCGCTC 540
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GTGCCGACGCTCGTCGTGTCGTCGGCGGAGGCGGCCAGGGAGGTGCTCAAGACGCACGAC 359
consensus_9271#0 ATGATGCTCCGCTTCGGTGCCGTGCCGACGCTCGTCGTGTCGTCGGCCGAGGCCGCCAGG 600
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GCGTGCTTCGCCAGCCGCCACATGACGCCCACGCTCGCCGTCTTCACCCGCGGCGGCCGG 419
consensus_9271#0 GAGGTGCTCAAGACGTACGACGCCGCCTTCGCCAGCCGCTACCTCACGCCGACCCTGGCC 660
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GACATCCTCTTCTCCCCCTACGGCGACCTGTGGCGCCAGCTCCGGAGGATCTGCGTGCTC 479
consensus_9271#0 GTCCTCAGCCGCGGCGGCCGCGACATCCTCTTCTCCCCCTACTGCGACCTGTGGCGCCAG 720
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GAGCTCTTCAGCGCGCGCCGCGTGCAGTCGCTGCGCCACGTCCGCGAGGACGAGGCGGCG 539
consensus_9271#0 CTCCGGAGGATCTGCGTGCACGAGCTCCTCAGCGCGCGCCGCGTCCAGTCGCTCCGCCAC 780
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CGCCTCGTCCGCGCCGTCGCCGAAGAGTGCGCCATAGGCGGCGGCGGCGGCGCTGTGGTC 599
consensus_9271#0 GGGCGCGAGGACGAGGCGGCGCGCCTCGTCCGCTCCGTCGCCGCCGAGTGCGCCGCCCGC 840
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CCCATCGGCGACATGATGTCCCGCATGGTGAACGACTCCGTCGTGCGCTCCGCCATCGGG 659
consensus_9271#0 GGCGGCGCAGCCGTTGTCAACGTCGGCGAGCTGATCTCCCGCGCGGTGAACGACTCCGTC 900
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GGCCGGTGCGCGCGGCGCGACGAGTTCCTCCGCGAGCTCGAGGTCTCCGTCAGGCTCACC 719
consensus_9271#0 GTGCGATCCGCCGTCGGCGCCCGGTCGGCGCGGCGCGACGAGTTCGTGCGCGAGCTCGAC 960
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GGCGGGTTCAACCTGGCCGACCTGTACCCGTCGTCGTCGCTGGCGCGCTGGCTCAGCGGC 779
consensus_9271#0 GAGTCGGTGAGGCTCTCCGGCGGGTTCAACCTGGCCGACCTGTACCCGTCGTCGTGGCTG 1020
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GCGCTCCGGGAGACCGAGCAGTGCAACCGGAGAGTGCGCGCCATCATGGACGACATCATC 839
consensus_9271#0 GCGCGCCGGCTCAGCGGCGCGATGCGGGAGACGGAGCGGTGCAATCGGAGCTTGATGGCC 1080
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CGCGAGCGCGCTGCAGGCAAGGACGACGGCGACGGCGAGGACGACCTCCTCGGCGTCCTG 899
consensus_9271#0 ATCATGGACGACATCATCCGGGAGCACGGCGACGGCGAGGAAGACCTCCTCGGCGTACTC 1140
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CTCAGGCTGCAGAAGAACGGCGGCGTGCAGTGTCCCCTCACCACCGACATGATCGCCACC 959
consensus_9271#0 CTCAGATTGCAGAGGAACGGCGATGTGCAGTGTCCCCTCACCACCGATTTGATCACTAAC 1200
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 GTCATCATGGAAATATTTTCGGCCGGGAGCGAGACAGCATCAACAACGCTTGAGTGGGCA 1019
consensus_9271#0 GTCGTCTTGGACATGTTTGCGGCTGGGAGTGAAACCTCGTCTACGACACTTGAGTGGGCC 1260
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 ATATCGGAGCTAGTGAGAAACCCAAAAGTCATGGATAAGGCCCAATCAGAGGTCAGGAAA 1079
consensus_9271#0 TTAACAGAGCTAGTAAGGAACCCACACATCATGGAAAAGGCCCAATCAGAGGTGCGGGAG 1320
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 TTGTTCGAGGGACAAGACAATCTAACCGAGGACGACATGAGCAGGCTAAGCTACCTTCAC 1139
consensus_9271#0 ATATTTAGGGGAGAAAACAAGCTAACAGAGGAAATGATGGACAAGCTAAGCTACCTCCGC 1380
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 CTGGTTATACGGGAAACACTTCGCCTACATGCGCCAGCACCATTCCTTCTACCTCGAGAA 1199
consensus_9271#0 TTGGTGATTCGGGAAACACTCCGACTACATTTACCGGTACCATTCCTTCTTCCTAGGCAG 1440
consensus_9271#2 -----------------------GGGCTACGACATAACCGAAGGAACTCGAG--TGCTTG 35
consensus_9271#3 --------------------------------AATCCGCAAGGNACCTCGACGCTGCTTG 28
consensus_9271#1 TGCCGTGAGCAGTGCAACGTCATGGGCTACGACATAACCGAAGGAACTCGAG--TGCTTG 1257
consensus_9271#0 TGCCGTGAGCCATGCTCGGTTATGGGCTATGACATACCAGTGGGAACTAAAG--TGCTTG 1498
** * * ** * ******
consensus_9271#2 TAAATGCTTGG-CCACTTGC-AAGGGATACTAGG--TATT--GGGAGGATCCCGAGATT- 88
consensus_9271#3 TAAATGCTTGGGCCACTTGCCAAGGGATACTAGGCTCATTCGNGGAGGATCCCGAGATTC 88
consensus_9271#1 TAAATGCTTGGGCCA-TTGC-AAGGGATACTAGG--TATT--GGGAGGATCCCGAGATT- 1310
consensus_9271#0 TGAACGCTTGGGCCA-TAGC-TAGGGACAATCAG--TATT--GGGATGATCCCGAGGTA- 1551
* ** ****** *** * ** ***** * * * *** *** ********* *
consensus_9271#2 -TTTAAACCAGAGAGA-TTCA--CGCGAA----TCTCGTTGATTTC---AAGGGTAATTA 137
consensus_9271#3 TTTCAAACCAGAGAGTCTTCAACCGCGAATGCATCCGCTTGATCTTCCAACGGGTAATTA 148
consensus_9271#1 -TTTAAACCAGAGAGA-TTCAA-CGCGAA----TCTCGTTGATTTC---AAGGGTAATGA 1360
consensus_9271#0 -TTCAAACCAGAAAGG-TTCGAGAACAA-----TCGTGTCGACTTT---AAGGGTATAGA 1601
** ******** ** *** * * ** * ** * * ***** *
consensus_9271#2 TTTCGAGTATATCCCTTTTGGCTCCG-GTA-GGAGGGTGT-GTCCTGGGAT-AACACTTG 193
consensus_9271#3 TTTCGAGTATATCCCTTTTGGCTCCCCGTATGGAGGGTGTTGTCCTGGGATCAACACTTG 208
consensus_9271#1 TTTCGAGTATATCCCTTTTGGCTCCG-GTA-GGAGGGTGT-GTCCTGGGAT-AACACTTG 1416
consensus_9271#0 TTTCGAGTTCATTCCTTTCGGTGCTG-GGA-GGAGGATAT-GCCCTGGGAT-TGCACTTG 1657
******** ** ***** ** * * * ***** * * * ******** ******
consensus_9271#2 GGCTAACTAGTATGGA-GCTTGTG-CTTGCAAGTTTGCTTTAC-TACTTCGA--TTGGGA 248
consensus_9271#3 GGCTAACTAGTATGGACGCTTGTNGCTTGCAAGTTTGCTTTACCTACTTCCGACTTGGGA 268
consensus_9271#1 GGCTAACTAGTATGGA-GCTTGTG-CTTGCAAGTTTGCTTTAC-CACTTCGA--TTGGGA 1471
consensus_9271#0 GGCTTGCCAATATAGA-GCTCATG-CTTGCCAGCCTCCTATAC-CATTTTGA--CTGGGA 1712
**** * * *** ** *** * ***** ** * ** *** * ** *****
consensus_9271#2 GCTCCCAG-GTGGCAAGA--GGTGTGAA-GAGATTGA-TATG-TCGGA-GGCATTC-GGG 300
consensus_9271#3 GCTCCCAGTGTGGCAACGACGGTGTGAACGAGATTGACTATGGTCGGAAGGCATTCAGGG 328
consensus_9271#1 GCTCCCAG-GTGGCAAGA--GGTGTGAA-GAGATTGA-TATG-TCGGA-GGCATTC-GGG 1523
consensus_9271#0 GTTCCTCG-ATCGAGACA--GGAATGAC-GAGATTGACT-TG-TCCGA-GACATTT-GGT 1764
* *** * * * * ** *** ******** * ** ** ** * **** **
consensus_9271#2 ATCACCGGTGCGCA-GGTAAATCGAAGCTTGTGTTGCACGCTA-CGCCACGTGTTCCGTG 358
consensus_9271#3 ATCATCGGTGCGCACGGAAATTCGAAGCTTGTGTTGCACGCTATCGCCACGTGTTCCGTG 388
consensus_9271#1 ATCA-CGGTGCGCA--GGAAATCGAAGCTTGTGTTGCACGCTA-CGCCACGTGTTCCGTG 1579
consensus_9271#0 ATCAC---TGCAAAGAGGAAGTCGAAGCTCATGGTGTATGCTA-CACAACGTATTCCATG 1820
**** *** * * ** ******** ** ** * **** * * **** **** **
consensus_9271#2 TTT-GCATTAACAGTGGTTCG-ATGC---TTT-CGCACGTGTA--TAGACGATGCATGTT 410
consensus_9271#3 TTTTGCATTAACAGTGGTTCG-ATGC---TTTACGCACGTGTAC-TAGACGATGCATGTT 443
consensus_9271#1 TTT-GCATTAACAGTGGTTCG-ATGC---TTT-CGCACGTGTA--TAGACGATGCATGTT 1631
consensus_9271#0 TTT-GGGTTAACTGTTTTGTGTATGTGAACTCTTGCATAACTAGGCACGTTCTCCATGCT 1879
*** * ***** ** * * *** * *** ** * * **** *
consensus_9271#2 ATATTTGG-CAGGATTGTAGTATTGA--------AATACTTAAGATTCTTAT-GATAATG 460
consensus_9271#3 ATATTTG--CAGGATTGTA-TATTGA--------AATACTTAAGATTCTTAT-GATTATG 491
consensus_9271#1 ATATTTG--CAGGATTGTA-TATTGA--------AATACTTAAGATTCTTAT-GAT---- 1675
consensus_9271#0 CTTATGGCTCCTCTTTATCTGGTAGACTAAACTTAATTCTCTGGTTACTTATAGATAATG 1939
* * * * ** * * ** *** ** * * ***** ***
consensus_9271#2 CTATTTAATTATAGATGGAG-AAACTACTCCCATCTGGCC---ATA-------AAATGCT 509
consensus_9271#3 CTATTTAATTATAGATGGAG-AAACTACTCCCATCTGGCC---ATA-------AAAAA-- 538
consensus_9271#1 ----------------GGAG-AAACTACTCCCATCTGGTC---ATA-------AAATGCT 1708
consensus_9271#0 TCACCCTAGGGTGAGTGATGTGAAATGTATTGATTTGAACTAGATAGTACCAAAAATATG 1999
* * ** * ** ** * *** ***
consensus_9271#2 TCACTTTCATGTATTATCAAATGNNACCTAGTTTTAAGTTTCGAAGATA----------- 558
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 TCACTTTCATGTATTATCAAATGGA--CTAGTTTTAAGTTTCGAAGATAAAAAAAAAAAA 1766
consensus_9271#0 TAATTTTGATATATGATAAAAGTGTGCACCATTTTATGATGACAATTAATTATTTTGTAA 2059
consensus_9271#2 ------------------------------------------------------------
consensus_9271#3 ------------------------------------------------------------
consensus_9271#1 AAAAAAACTCGAGACTAGTTCTCTCTC--------------------------------- 1793
consensus_9271#0 GTATACCTCTCTCCGAATAAATCTAAACCTGTGTAAATTAGTATGTCTTTGTACATTATC 2119
consensus_9271#2 ----------------
consensus_9271#3 ----------------
consensus_9271#1 ----------------
consensus_9271#0 ACTATTATTCAGTAGC 2135
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||