These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGTGGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATATATATGTGAAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTCAATCAGTTATGAAAGATCGAAT] [+] EMBL AK111239 [CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGTGGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATATATATGTGAAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTCAATCAGTTATGAAAGATCGAAT] consensusID : consensus_928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGTGAAAAGTGCATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA758576 [TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGTGAAAAGTGCATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_928#0 CACATCTTAATTCCTCTTCTGACCAAGATCCAAAGAAAGTTACAAAGCCCATATGATGGT 60 consensus_928#1 ------------------------------------------------------------ consensus_928#0 GGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTC 120 consensus_928#1 ---------TGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTC 51 *************************************************** consensus_928#0 TTCTTCCCCGGCGCCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAA 180 consensus_928#1 TTCTTCCCCGGCGGCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAA 111 ************* ********************************************** consensus_928#0 CTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTC 240 consensus_928#1 CTCGTCGTGCGCCGGTGGGATGGGTGGCTGCAGCGGCGCCTGCACTGACCCAGCGTCCTC 171 ************************************************************ consensus_928#0 CTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTA 300 consensus_928#1 CTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTGCGGCTCCTA 231 ************************************************************ consensus_928#0 CTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAA 360 consensus_928#1 CTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAA 291 ************************************************************ consensus_928#0 TTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCG 420 consensus_928#1 TTAGAAGCTTGTTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCG 351 ************************************************************ consensus_928#0 CTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATAT-ATATATGT 479 consensus_928#1 CTTGTGCTTGCATATGGTGGATGTATGCCCCTACTATGTACAACTTCATATTATATATGT 411 *************************************************** ******** consensus_928#0 GAAAGTTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGTAACTCGGTC 539 consensus_928#1 GAAAAGTGCATGTGTCTTCTGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 471 **** ****************** consensus_928#0 AATCAGTTATGAAAGATCGAAT----------------------- 561 consensus_928#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 516 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||