These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1328 fasta sequence [GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT-CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCG-GCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGCCAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGCGGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAACAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTTAGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGGTGAAACAT] [+] EMBL AK105512 [GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTTCCCCTGGACAAGGCCGCGGCCCGCTCCACCCCACTCGCGCTCCCCGCCGCTGGGGCG GCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGCCAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGCGGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAACAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCCGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTTAGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGGTGAAACAT] [+] EMBL BI799376 [ ATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGCGCGGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGG ] [+] EMBL BI799363 [ ATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGCTT CCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCT GGGC GCGGC GCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGG ] [+] EMBL AA751486 [ AGCAATGTGTTGACCATTGGCAGCATCAGGNGCACGCTGATGAAGCATGAGGNCACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGCTGCTGCTAACATCAACATAAACAAAAGGNTCTGGGATGTGTACTTTGGTGACCTTCTGCCAAGGCTTGTGAAGGAAGGNNGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTTAATTCTGCAGGCACTCTCCAAGAGGATTCACTNTGGCAAG ] [+] EMBL AA750462 [ AAGCATGAGGACACCATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCCCAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGACCGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCCTGAGAATTTGCTGGAGGTGGTGGAGCCATC ] consensusID : consensus_9281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA] [-] EMBL CA759527 [CCAGAGGCCGAGCCAAGGGGGGCCATGTTAATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTTCCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGTCCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTTGGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGAATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9281#0 GCCACCACTCCATTGCCATCTTCTTCCACCTCCAGCCTCCTCCTCCGCCTCCAATGGAGC 60 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 TTCCCTGGACAAGGCCGCGGCCCGCTCCACCCCGCTCGCGCTCCCCGCCGCTGGGGCGGC 120 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 GGCGGCGGCGAACCAGTCCCCGGCGTCTCTGCCACTGGGACCACCCGCGGCCGCCTCCGC 180 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 CAAGCCCCTCGTCGCGGCCGCCAACCCGCCGCTGCTGCCGGTGGTGGCTCCGGCGGCGGC 240 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 GGCGCCCAAGTCGTCGTCAGGGGCCGTGGAAGAGAGCAAAGAGGGTGTGGAAGAGAGCAA 300 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 CAAGAGCAATGTGTTGACCATTGGCAGCATCAGGAGCACGCTGATGAAGCATGAGGACAC 360 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 CATCATCTTCGGCCTTCTGGAGAGGTCACAGTTCTGCTACAACCCGGACACCTACGACCC 420 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 CAACGCTTCCAGGATCGTCGGGTTCAATGGCTCCCTGGTCGAGTTCATGGTTAAAAAGAC 480 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 CGAGAAGATGCATGCTAGAATGGGGAGGTACAAGAGCCCGGATGAGCATCCTTTCTTCCC 540 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 TGAGAATTTGCTGGAGGTGGTGGAGCCATCTGTTGAGTATGAGAATGTTCTGCATCCAGC 600 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 TGCTGCTAACATCAACATAAACAAAAGGATCTGGGATGTGTACTTTGGTGACCTTCTGCC 660 consensus_9281#1 ------------------------------------------------------------ consensus_9281#0 AAGGCTTGTGAAGGAAGGAAGTGACGGTAACTGTGGATCGAGCGCATGCTGGGACATGTT 720 consensus_9281#1 ------------------------------CCAGAGGCCGAGC-CAAGGGGGGCCATGTT 29 * * ***** ** * *** ****** consensus_9281#0 AATTCTGCAGGCACTCTCCAAGAGGATTCACTATGGCAAGTATGTGGCAGAGGCTAAGTT 780 consensus_9281#1 AATTCTGCAGGCCCTCTCCAAGAGGATTCACTATGGCAAGTATGTGCCAGAGGCTAAGTT 89 ************ ********************************* ************* consensus_9281#0 CCAGGGGGCACCTGACACGTACACGCCTGCAATCTTAAACAAGGACAGTGACAAGCTGAT 840 consensus_9281#1 CCAGGGGGCACCTGACACGTACACGCCTGCAATTTTAAACAAGGACAGTGCCAAGCTGAT 149 ********************************* **************** ********* consensus_9281#0 GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC 900 consensus_9281#1 GGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGC 209 ************************************************************ consensus_9281#0 CATGACCTTCGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA 960 consensus_9281#1 CATGACCTTNGGCCAGGTGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGA 269 ********* ************************************************** consensus_9281#0 GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA 1020 consensus_9281#1 GCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATCATGCCACTGACCAAGGAAGTGCA 329 ************************************************************ consensus_9281#0 AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT 1080 consensus_9281#1 AGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCCTGT 389 ************************************************************ consensus_9281#0 CCATCTACAAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT 1140 consensus_9281#1 CCATTTACGAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTT 449 **** *** *************************************************** consensus_9281#0 ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCTGTAGTTTGCAGTTT 1200 consensus_9281#1 ATGTTTTGTTTTACCAGATACTGCTTTGAGTTCAGTTTTAGTTTCAGTAGTTTGCAGTTT 509 ********************************************* ************** consensus_9281#0 AGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA 1260 consensus_9281#1 GGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTTCTCAGCAGAGCATTTGGTACTGA 569 *********************************************************** consensus_9281#0 ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTATTTCTATGG 1320 consensus_9281#1 ATTGCAACTTGAATGGAGGTTGTCTGAATTGAAAAGCCAAGATTTGAGCTAAAAAAAAAA 629 *************************************************** * consensus_9281#0 TGAAACAT 1328 consensus_9281#1 AAAA---- 633 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||