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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1340 fasta sequence
[GCGTATATTCAGCTTCGGGGACTCGCTGACGGACACCGGCAACTTCCTGCTCTCCGTGCCGGAGGACTTCCCGGACCCCGCCCGCAGCCTCCCCTACGGCCAGACCTTCTTCGGCCGCCCCTCCGGCCGCTACTCCGACGGCCGCAACCTCCTCGACTTCTTCGCGGAAGCATTTGGTCTGCCGTTCGTGCCGCCGTACCTGGCTGGCGGCGACTTCCGGCAAGGCGCAAATTTCGCGGTCGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGAGCCGACATGGACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTCCTCGTCAGAGTCCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGTAGGCGGAAATGATTACAACCATCTAATTGTCAGGGGGAAATCTCTAGATGAGCTACACGAGCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGGAGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATTCCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACGGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTTTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCAGAAATTTGCAATTGCCATGTCCATGGCTTTGCCCAACCCATTTAGTTTCTCAGAAATTTACTGCAACGGGAA]
[+] EMBL CB658656 [GCGTATATTCAGCTTCGGGGACTCGCTGACGGACACCGGCAACTTCCTGCTCTCCGTGCCGGAGGACTTCCCGGACCCCGCCCGCAGCCTCCCCTACGGCCAGACCTTCTTCGGCCGCCCCTCCGGCCGCTACTCCGACGGCCGCAACCTCCTCGACTTCTTCGCGGAAGCATTTGGTCTGCCGTTCGTGCCGCCGTACCTGGCTGGCGGCGACTTCCGGCAAGGCGCAAATTTCGCGGTCGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGAGCCGACATGGACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTCCTCGTCAGAGTCCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGTAGGCGGAAATGATTACAACCATCTAATTGTCAGGGGGAAATCTCTAGATGAGCTACACGAGCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGGAGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTG ]
[+] EMBL AA750492 [ GGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGGAGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCT ]
[-] EMBL CB658657 [ TCCAATAGGCTGTGTACCATTGTATCTCTCAATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTTAAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATTCCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACGGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTTTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCAGAAATTTGCAATTGCCATGTCCATGGCTTTGCCCAACCCATTTAGTTTCTCAGAAATTTACTGCAACGGGAA]
consensusID : consensus_9282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence
[CTAGCTCGTGCCGAATTCGGCACGAGCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACCGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGANCATACAAAGTCTCACAACTTCATCAATGTNCAGATAACCCAACAAACACTGTAACGTATGATTCTATGANCTCTTTTATTTGATCCTCTGANCTCTANGGCATGTNNAGTNTTAAGGAGCAATATAGATATNACAGGCCCCATCCCCTTGGACACTTCTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCANNNNNNNNCAATTGCCATGTCCATGNCNNNGNNNNNNNNATNNAGTTTCTCNNNNNNNTACTGCANCNNNNNNNNGNANGTACANNNNNN]
[+] EMBL BE228263 [CTAGCTCGTGCCGAATTCGGCACGAGCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGCTCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGACCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACCGAGGCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGANCATACAAAGTCTCACAACTTCATCAATGTNCAGATAACCCAACAAACACTGTAACGTATGATTCTATGANCTCTTTTATTTGATCCTCTGANCTCTANGGCATGTNNAGTNTTAAGGAGCAATATAGATATNACAGGCCCCATCCCCTTGGACACTTC ]
[+] EMBL CF196376 [ GCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTCTCAAAGGTGAGAAGAGCATTGGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTTGTAGAGCANNNNNNNNCAATTGCCATGTCCATGNCNNNGNNNNNNNNATNNAGTTTCTCNNNNNNNTACTGCANCNNNNNNNNGNANGTACANNNNNN]
consensusID : consensus_9282#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[GCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCNNNTTGGACACTTCTCAAAGGTGAGAAGAGCANNNNTNNGGGANNNNTGTACNNCN]
[+] EMBL CF196366 [GCAACCTACAAGATTATCATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGGAGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTATGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGAGCAATATAGATATAACAGGCCCCATCNNNTTGGACACTTCTCAAAGGTGAGAAGAGCANNNNTNNGGGANNNNTGTACNNCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9282#0 GCGTATATTCAGCTTCGGGGACTCGCTGACGGACACCGGCAACTTCCTGCTCTCCGTGCC 60
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 GGAGGACTTCCCGGACCCCGCCCGCAGCCTCCCCTACGGCCAGACCTTCTTCGGCCGCCC 120
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 CTCCGGCCGCTACTCCGACGGCCGCAACCTCCTCGACTTCTTCGCGGAAGCATTTGGTCT 180
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 GCCGTTCGTGCCGCCGTACCTGGCTGGCGGCGACTTCCGGCAAGGCGCAAATTTCGCGGT 240
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 CGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGAGCCGACATG 300
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 GACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTC 360
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 CTCGTCAGAGTCCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGT 420
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 AGGCGGAAATGATTACAACCATCTAATTGTCAGGGGGAAATCTCTAGATGAGCTACACGA 480
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 GCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGCTCATAAACCTTGG 540
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 AGCAAAGAAACTAGTTGTTCCAGGAAACTTTCCAATAGGCTGTGTACCATTGTATCTCTC 600
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 AATCTTTCCAAGCCAAAAGGAAGACTACTATGATGAGAAAACAGGGTGCATTAAATGGTT 660
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 AAATGAATTCACCGAGTACCATAATCGATTGCTTCAGGAGGAGCTGGAGAAGCTCAGGAA 720
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 TCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATT 780
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 ---------------------------------CTAGC-TCGTGCCGAATTCGGCACGAG 26
consensus_9282#0 CCTTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGC 840
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 C-TTGCCCCACTCCAGTTTGGTTTCACTGTCCCGCTGAACTCGTGTTGTGGAAGTGATGC 85
consensus_9282#0 TCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGA 900
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 TCCATACAATTGTTCTCCGTCAATATTGTGCGGGCACCCTGGGTCTGTGGTCTGCTCTGA 145
consensus_9282#0 CCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACGGAGGCAACCTACAAGATTAT 960
consensus_9282#2 -------------------------------------------GCAACCTACAAGATTAT 17
consensus_9282#1 CCCATCAAAGTACACTTCATGGGATGGTCTCCACTTCACCGAGGCAACCTACAAGATTAT 205
*****************
consensus_9282#0 CATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGG 1020
consensus_9282#2 CATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGG 77
consensus_9282#1 CATTCAAGGGGTGCTAGGGTCATATGCCAACCCTCCTCTTTCAGAAACTTGTCGGGGTGG 265
************************************************************
consensus_9282#0 AGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTA 1080
consensus_9282#2 AGCATACAAAGTCTCACAACTTCATCAATGTACAGATAACCCAACAAACACTGTAACGTA 137
consensus_9282#1 ANCATACAAAGTCTCACAACTTCATCAATGTNCAGATAACCCAACAAACACTGTAACGTA 325
* ***************************** ****************************
consensus_9282#0 TGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGA 1140
consensus_9282#2 TGATTCTATGAGCTCTTTTATTTGATCCTCTGAGCTCTAGGGCATGTAGAGTATTAAGGA 197
consensus_9282#1 TGATTCTATGANCTCTTTTATTTGATCCTCTGANCTCTANGGCATGTNNAGTNTTAAGGA 385
*********** ********************* ***** ******* *** *******
consensus_9282#0 GCAATATAGATATAACAGGCCCCATCCCCTTGGACACTTTTCAAAGGTGAGAAGAGCATT 1200
consensus_9282#2 GCAATATAGATATAACAGGCCCCATCNNNTTGGACACTTCTCAAAGGTGAGAAGAGCANN 257
consensus_9282#1 GCAATATAGATATNACAGGCCCCATCCCCTTGGACACTTCTCAAAGGTGAGAAGAGCATT 445
************* ************ ********** ******************
consensus_9282#0 GGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTT 1260
consensus_9282#2 NNTNNGGGANNNNTGTACNNCN-------------------------------------- 279
consensus_9282#1 GGTTGGGGATCTTTGTACTTCTCAAATCCATTTTTCTGCTACAGGTAGAAAAGAGATTTT 505
* **** ***** *
consensus_9282#0 GTAGAGCAGAAATTTGCAATTGCCATGTCCATGGCTTTGCCCAACCCATTTAGTTTCTCA 1320
consensus_9282#2 ------------------------------------------------------------
consensus_9282#1 GTAGAGCANNNNNNNNCAATTGCCATGTCCATGNCNNNGNNNNNNNNATNNAGTTTCTCN 565
consensus_9282#0 GAAATTTACTGCAACGGGAA------------------ 1340
consensus_9282#2 --------------------------------------
consensus_9282#1 NNNNNNTACTGCANCNNNNNNNNGNANGTACANNNNNN 603
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||