These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATTAAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAAGTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCTCCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAAAACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGGCTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAACCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC] [+] EMBL CA762955 [TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATTAAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAAGTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCTCCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAAAACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGGCTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAACCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC] consensusID : consensus_9285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 486 fasta sequence [TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGC-GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG-CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGTGCC] [-] EMBL CF303482 [TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCAAAACGGC GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGT ] [-] EMBL CF303846 [ agCAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGC GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGT ] [-] EMBL CF303021 [ CCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGC GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGG GGAGGAGGAGGAGACGGAATTGGT ] [-] EMBL OSR23671A [ AACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGNCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGNCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATC CCGGCGCGGC NCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAGNCTA CTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGG ] [-] EMBL CF304191 [ CTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATATCGATTGGAATCCGCATATGGTACTAGTCCTCCACTACTGGCGGCGCCGAGGTCGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGAACAGCAACCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9285#0 TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATT 60 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 AAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAA 120 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 GTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCT 180 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 CCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACAC 240 consensus_9285#1 --------------------TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACAC 40 **************************************** consensus_9285#0 TTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACA 300 consensus_9285#1 TTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACA 100 ********************** ************************************* consensus_9285#0 GTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAA 360 consensus_9285#1 GTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGA 160 *************************** ****************************** * consensus_9285#0 TTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCAT 420 consensus_9285#1 TTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCAT 220 ************************************************************ consensus_9285#0 ATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAA 480 consensus_9285#1 ATGCTACTAGTCCTCCACTAC-------TGGCGGCGCCGAGGACGAGGACGAGGTTGGTG 273 ********** ********** * * ** ** *** * * * * consensus_9285#0 AACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGG 540 consensus_9285#1 AAGGTGGGGCGGTGGTTGAACGCCCTCGACG--CGCCCTCCCACATGAACGCCGTCCAC- 330 ** * * * *** * * * * * * * * * ** * * consensus_9285#0 CTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAA 600 consensus_9285#1 CTCATCGCCGGCGCGGCGCCCTGCTG-CTGCTGCCTCTTCTCCGGTGATCTCGGAG-GAT 388 ** * *** * ** *** * * * ** ***** * ** ** consensus_9285#0 CCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC------ 654 consensus_9285#1 ATGCTCCTCCGCTCTAGGCTCTAGCTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGA 448 * * * * * * * * * * * ** ** ** * consensus_9285#0 -------------------------------------- consensus_9285#1 GAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGTGCC 486 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||