cluster # 9285

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Oryza sativa
cluster # 9285 cluster # 9285 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9285#0 length = 654 sequences # 1

consensus_9285#1 length = 486 sequences # 5

consensusID : consensus_9285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATTAAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAAGTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCTCCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAAAACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGGCTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAACCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC]

[+] EMBL CA762955             [TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATTAAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAAGTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCTCCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAAAACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGGCTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAACCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC]




>consensus_9285#0
TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATT
AAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAA
GTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCT
CCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACAC
TTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACA
GTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAA
TTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCAT
ATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAA
AACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGG
CTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAA
CCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC

consensusID : consensus_9285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 486
fasta sequence

                              [TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGC-GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG-CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGTGCC]

[-] EMBL CF303482             [TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCAAAACGGC GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGT   ]
[-] EMBL CF303846             [  agCAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGC GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGT   ]
[-] EMBL CF303021             [                          CCCACAAGTGACACTTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGC GCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGG GGAGGAGGAGGAGACGGAATTGGT   ]
[-] EMBL OSR23671A            [                                                                                                                                                           AACGATTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTACTGNCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGNCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATC CCGGCGCGGC NCCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAGNCTA CTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGG                      ]
[-] EMBL CF304191             [                                                                                                                                                                       CTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATATCGATTGGAATCCGCATATGGTACTAGTCCTCCACTACTGGCGGCGCCGAGGTCGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTCGACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGAACAGCAACCCTGCTGCTGCTGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAG CTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGTGCC]




>consensus_9285#1
TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACACTTGGGAGCAGGGGCGTGAAT
GCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACAGTCTGCTGTCAAGATTCCTC
AGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGATTTTCTTCTTTGGAGGTCCC
TGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCATATGCTACTAGTCCTCCACTA
CTGGCGGCGCCGAGGACGAGGACGAGGTTGGTGAAGGTGGGGCGGTGGTTGAACGCCCTC
GACGCGCCCTCCCACATGAACGCCGTCCACCTCATCGCCGGCGCGGCGCCCTGCTGCTGC
TGCCTCTTCTCCGGTGATCTCGGAGGATATGCTCCTCCGCTCTAGGCTCTAGCTAGCTAC
GCTACGGCGAGAAGGTAGGAGGAGTAGAGAGAAGGTGGTGGAGGAGGAGGAGACGGAATT
GGTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9285#0      TTTTTTTTGAATAAACAAGTATTATATTGCTTTGATACGCAAAGCCATCAACTCTACATT 60
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      AAGCCCAAATAACAAATAAGTTGTCCAAATTGCTCTGATAAAGACAAGGCGGTGACAGAA 120
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      GTATAAATATAGAAAAAACAGAGCAATCTGTGGAAATTTCTGAGAGTCATCATACCTTCT 180
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      CCAAAATCCTACGAATCGGCTCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACAC 240
consensus_9285#1      --------------------TCAACAACGCTCCTTGGCTCAACTGTCCCACAAGTGACAC 40
                                          ****************************************

consensus_9285#0      TTGGGAGCAGGGGCGTGAATGCAAAATAATTCCGAGGTGAAATGACCTGAACATCATACA 300
consensus_9285#1      TTGGGAGCAGGGGCGTGAATGCGAAATAATTCCGAGGTGAAATGACCTGAACATCATACA 100
                      ********************** *************************************

consensus_9285#0      GTCTGCTGTCAAGATTCCTCAGGAACGGGGTGCCACCCCAACCGGTGCCAAGAACAACAA 360
consensus_9285#1      GTCTGCTGTCAAGATTCCTCAGGAACGTGGTGCCACCCCAACCGGTGCCAAGAACAACGA 160
                      *************************** ****************************** *

consensus_9285#0      TTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCAT 420
consensus_9285#1      TTTTCTTCTTTGGAGGTCCCTGGGGCTTCCCAACAACATCATCTGAATTGGAATCCGCAT 220
                      ************************************************************

consensus_9285#0      ATGCTACTAGACCTCCACTACGGCAAATTTGATAAGCGACAGATGAGCAACATGCTTAAA 480
consensus_9285#1      ATGCTACTAGTCCTCCACTAC-------TGGCGGCGCCGAGGACGAGGACGAGGTTGGTG 273
                      ********** **********       * *    **    ** *** *  * * *    

consensus_9285#0      AACATATGACAATGGCAAAGAGATTTAAGAGTTCACATAATTTCTTCATTGCGAACTAGG 540
consensus_9285#1      AAGGTGGGGCGGTGGTTGAACGCCCTCGACG--CGCCCTCCCACATGAACGCCGTCCAC- 330
                      **  *  * *  ***   *  *   *    *  * *       * * *  **   * *  

consensus_9285#0      CTGAGGGCCTCCAAGGGGCCGCATAGATCAGCTCAAGAACCCCAATGATCGCACAGTGAA 600
consensus_9285#1      CTCATCGCCGGCGCGGCGCCCTGCTG-CTGCTGCCTCTTCTCCGGTGATCTCGGAG-GAT 388
                      ** *  ***  *  ** ***     *       *     * **  ***** *  ** ** 

consensus_9285#0      CCTTTTCCACACATGAAGAACAATACCGTCAACCCACCTGGAATAGACACTCTC------ 654
consensus_9285#1      ATGCTCCTCCGCTCTAGGCTCTAGCTAGCTACGCTACGGCGAGAAGGTAGGAGGAGTAGA 448
                          * *  * *   * *  * *    *  *  * **   **  **  *           

consensus_9285#0      --------------------------------------
consensus_9285#1      GAGAAGGTGGTGGAGGAGGAGGAGACGGAATTGGTGCC 486