These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 929 fasta sequence [TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTGATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCA-CCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAGCTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC-TCTTGCAA-TGTTCTACACTTGG-CCATTAGCA-TTTTCCC-ATGTTTACTGGATGGAGTAAAATTGACAGC-AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT-CAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT] [+] EMBL CF310581 [TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTGATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCA CCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAGCTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC TCTTGCAA TGTTCTACACTTGG CCATTAGCA TTTTCCC ATGTTTACTGGATGGAGTAAAATTGACAG ] [-] EMBL C29096 [ CTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCANCCATTTCATTTGATCTTTCAACG ] [-] EMBL CF310580 [ CATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC TCTTGCAA TGTTCTACACTTGG CCATTAGCA TTTTCCC ATGTTTACTGGATGGAGTAAAATTGACAGC AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT CAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT] [-] EMBL BP184616 [ tnTTCATTTTCCTTCTTGCAATTGTTCTACATTTGGCCCATAAGCATTTTTCCCAATGTTTACTGNATGAAGTAAAATTGACAGCAAGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGATCCAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT] [-] EMBL AA751113 [ caagTCTACAC TGG CCTATAGCA TTTCCC ATGTTTACTGGATGGAGTAAAA TGACAGC AGCAACATTGTCCTGTAGTTCC TGATCTTTTTCTCC TCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT CAAGCAATAATCTCCTTGTCTG ] consensusID : consensus_9288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAGTTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGGGCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTTGCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT] [-] EMBL CA753350 [TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAGTTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGGGCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTTGCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9288#0 TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTG 60 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 ATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGC 120 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 TGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATC 180 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 ATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGC 240 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 AAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAAT 300 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 GGCCACCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAG 360 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 CTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCC 420 consensus_9288#1 ------------------------------------------------------------ consensus_9288#0 AAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCCTCTTGCAA 480 consensus_9288#1 -------------------------------------TTTTCGTTGTTCTCTNNNCTTCN 23 * ** * ** ** consensus_9288#0 TGTTCTACACTTGGCCATTAGCATTTTCCCATGTTTACTGGATGGAGTAAAATTGACAGC 540 consensus_9288#1 CNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAAT--ACGAC 81 ** **** *** * * * * *** ** * **** ** * consensus_9288#0 AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAA 600 consensus_9288#1 A-----AATGTC----GGTGTCCTAGTTTTTTT---CTTCTCCTCAACAAG---TTTTTA 126 * * **** ** * * * ***** ********* ***** *** * consensus_9288#0 TCGTGTAAATTCCTCGTGGATTGCTGGATCAAGCAATAATCTCCTTGTCTGCATCGATGG 660 consensus_9288#1 TTGGGTAA--TCCTCG-GGATTG-TGGAT-AAGCAATA--TTTCTTGTTTGAATNGATGG 179 * * **** ****** ****** ***** ******** * ***** ** ** ***** consensus_9288#0 TGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTC 720 consensus_9288#1 -GGCCTTAATGGAGTTT-CAAATCCCTAA-TGCAAACTTAAGTTCTGCA--TTTCTGTTA 234 ********* ****** *********** **** **** ********* ** **** consensus_9288#0 ACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTC 780 consensus_9288#1 AGGTTT-GCAAATGTTACAA-GAAAGGTGCCTCT-TTTTCTTAGCTTTCTCCAGCTGCTC 291 * **** ************* ***** ****** ************************* consensus_9288#0 CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC 840 consensus_9288#1 CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC 351 ************************************************************ consensus_9288#0 TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC 900 consensus_9288#1 TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC 411 ************************************************************ consensus_9288#0 TTCTGATTTGGCAGCCTCCCGTTCCACCT 929 consensus_9288#1 TTCTGATTTGGCAGCCTCCCGTTCCACCT 440 ***************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||