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Oryza sativa
cluster # 9288 cluster # 9288       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9288#0 length = 929 sequences # 5  
consensus_9288#1 length = 440 sequences # 1  

consensusID : consensus_9288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 929
fasta sequence
                              [TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTGATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCA-CCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAGCTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC-TCTTGCAA-TGTTCTACACTTGG-CCATTAGCA-TTTTCCC-ATGTTTACTGGATGGAGTAAAATTGACAGC-AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT-CAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]

[+] EMBL CF310581             [TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTGATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCA CCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAGCTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC TCTTGCAA TGTTCTACACTTGG CCATTAGCA TTTTCCC ATGTTTACTGGATGGAGTAAAATTGACAG                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL C29096               [                                                                                                     CTACTCTAGAAATGACTGCTGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATCATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGCAAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAATGGCCANCCATTTCATTTGATCTTTCAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF310580             [                                                                                                                                                                                                                                                                                                                                                                                                                               CATTCCAAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCC TCTTGCAA TGTTCTACACTTGG CCATTAGCA TTTTCCC ATGTTTACTGGATGGAGTAAAATTGACAGC AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT CAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
[-] EMBL BP184616             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             tnTTCATTTTCCTTCTTGCAATTGTTCTACATTTGGCCCATAAGCATTTTTCCCAATGTTTACTGNATGAAGTAAAATTGACAGCAAGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGATCCAAGCAATAATCTCCTTGTCTGCATCGATGGTGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTCACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]
[-] EMBL AA751113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  caagTCTACAC TGG CCTATAGCA  TTTCCC ATGTTTACTGGATGGAGTAAAA TGACAGC AGCAACATTGTCCTGTAGTTCC TGATCTTTTTCTCC TCTCCTCCACAAGATTCTTTAATCGTGTAAATTCCTCGTGGATTGCTGGAT CAAGCAATAATCTCCTTGTCTG                                                                                                                                                                                                                                                                                      ]


>consensus_9288#0 TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTG ATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGC TGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATC ATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGC AAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAAT GGCCACCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAG CTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCC AAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCCTCTTGCAA TGTTCTACACTTGGCCATTAGCATTTTCCCATGTTTACTGGATGGAGTAAAATTGACAGC AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAA TCGTGTAAATTCCTCGTGGATTGCTGGATCAAGCAATAATCTCCTTGTCTGCATCGATGG TGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTC ACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTC CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC TTCTGATTTGGCAGCCTCCCGTTCCACCT



consensusID : consensus_9288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAGTTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGGGCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTTGCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]

[-] EMBL CA753350             [TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAGTTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGGGCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTTGCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTTGGCAGCCTCCCGTTCCACCT]


>consensus_9288#1 TTTTCGTTGTTCTCTNNNCTTCNCNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATAT GTGGTAGGGGGTAAATACGACAAATGTCGGTGTCCTAGTTTTTTTCTTCTCCTCAACAAG TTTTTATTGGGTAATCCTCGGGATTGTGGATAAGCAATATTTCTTGTTTGAATNGATGGG GCCTTAATGGAGTTTCAAATCCCTAATGCAAACTTAAGTTCTGCATTTCTGTTAAGGTTT GCAAATGTTACAAGAAAGGTGCCTCTTTTTCTTAGCTTTCTCCAGCTGCTCCTTCAATGA TTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATCTGGATTGGT TCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAACTTCTGATTT GGCAGCCTCCCGTTCCACCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9288#0      TTTTTTGCAAATCGGCAAGAATAAACGACATTAGATAAATTACACAAGTAAACACTTCTG 60
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      ATACATGATACAAAAAATAATAAGAATGTTGAGAACGCAAGCTACTCTAGAAATGACTGC 120
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      TGAAGGCGTAGCTTATGTTTCTACTTTTATTGGCTGACTCTCGGCGGCAGCAACTATATC 180
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      ATCTCCAGCGACGTCATTTTCTTGAGGTATTTTGTTCTCATCAGTTGCTTCTTTCTGGGC 240
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      AAGCATCTCCTTCAATCTTCTCAGCTCTACATCTTTTGTTTCTAACTCATCTTGAAGAAT 300
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      GGCCACCATTTCATTTGATCTTTCAACGTCATTTGTTAGACCATCCATGTGTTTATACAG 360
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      CTCATTGAACTGATTCCTGAGTTCATTGTTCCGAGTCTTCAAAACTGCAATTTTCATTCC 420
consensus_9288#1      ------------------------------------------------------------
                                                                                  

consensus_9288#0      AAGTTCATGGATTTTTCCTTCAGAAGCCATCGCCCCAATCTCTTCATTTTCCTCTTGCAA 480
consensus_9288#1      -------------------------------------TTTTCGTTGTTCTCTNNNCTTCN 23
                                                            * ** *  ** **         

consensus_9288#0      TGTTCTACACTTGGCCATTAGCATTTTCCCATGTTTACTGGATGGAGTAAAATTGACAGC 540
consensus_9288#1      CNTTTNTTTCTTGANNGTTAAGAGACATAGAAGATATGTGGTAGGGGGTAAAT--ACGAC 81
                        **     ****    ***  *       * * *   ***  ** *  ****  **  *

consensus_9288#0      AGCAACATTGTCCTGTAGTTCCTTGATCTTTTTCTCCTTCTCCTCCACAAGATTCTTTAA 600
consensus_9288#1      A-----AATGTC----GGTGTCCTAGTTTTTTT---CTTCTCCTCAACAAG---TTTTTA 126
                      *     * ****     **  * *  * *****   ********* *****    *** *

consensus_9288#0      TCGTGTAAATTCCTCGTGGATTGCTGGATCAAGCAATAATCTCCTTGTCTGCATCGATGG 660
consensus_9288#1      TTGGGTAA--TCCTCG-GGATTG-TGGAT-AAGCAATA--TTTCTTGTTTGAATNGATGG 179
                      * * ****  ****** ****** ***** ********   * ***** ** ** *****

consensus_9288#0      TGGCCTTAATTGAGTTTTCAAATCCCTAACTGCAGACTTCAGTTCTGCAATTTCTTGTTC 720
consensus_9288#1      -GGCCTTAATGGAGTTT-CAAATCCCTAA-TGCAAACTTAAGTTCTGCA--TTTCTGTTA 234
                       ********* ****** *********** **** **** *********  **  **** 

consensus_9288#0      ACGTTTCGCAAATGTTACAATGAAAGCCGCCTCTCTTTTCTTAGCTTTCTCCAGCTGCTC 780
consensus_9288#1      AGGTTT-GCAAATGTTACAA-GAAAGGTGCCTCT-TTTTCTTAGCTTTCTCCAGCTGCTC 291
                      * **** ************* *****  ****** *************************

consensus_9288#0      CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC 840
consensus_9288#1      CTTCAATGATTCTTCCGACGACTTCAGGTTATTGAGATAAGAAACAACCGAAACAGGATC 351
                      ************************************************************

consensus_9288#0      TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC 900
consensus_9288#1      TGGATTGGTTCCAGCAGGTACAGCTGGAATGTTCTGAAATGCTGAATGCCACTTTTGAAC 411
                      ************************************************************

consensus_9288#0      TTCTGATTTGGCAGCCTCCCGTTCCACCT 929
consensus_9288#1      TTCTGATTTGGCAGCCTCCCGTTCCACCT 440
                      *****************************




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)