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Oryza sativa
cluster # 9289 cluster # 9289       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9289#0 length = 1290 sequences # 6  

consensusID : consensus_9289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1290
fasta sequence
                              [TCTCAATCGACTTTTCAACACATTAAGTTGGACTATGACCGAGTCCTCTATGTCCATCCGTGAGATGCAAGAGAAGCGCCAGGTTGCAGATTTGCAGCAAAGAAAGTGCAGTGTTATTTTTGACATATCATGTAGTCTTGCAAGGATTTTGGAATTCTTCACCAGAGAGATTCCTCATGCATTCCTGATGGGGCCAGATATGAATCTGCGGAGGTTGGCTGAATTAGTTGTCTTTATTCTGAACCACATCATATTAGCAGCCGATGCAGAGTTCTTTGACATGACTCTAAGACGGCCAGGGCAACATCAAGAAAAAACAAATTGCACTATGATCTTGGCTCCTCTTGTTGGCATTATCCTCAATCTTATGGAAAGCAGCAGTACTTCAGGCCATAGGGAGTTAAATGATGTGATTACAGTGTTCACAAGCATGGATTGCCCTGCCACAATCCATTTTGGGTTGCAGTACCTACTGAGCTACAATTGGAGCAATGTTCTCCGAGGTGACGCTTCCCTTGCAAAGCTAGCTCAGCTTGAAGAATTCTCCCATTACTTTATGCACATCACTATGTCAGC-GGATGGCAATGAAGAGCAAGGTTTCAGCACTGCCAGTAATGAAGAGAACAACTGCTGCATATGCTACAATTCCGATTCGGATACCACATTCGAGCCATGCCATCACAGGTCCTGCTACGGCTGCATAACCAGGCACCTCCTCAACAGCCAAAGGTGCTTCTTCTGCAATGCAGTGGTGACTTCAGTTACCAGGATAGCTGATTCGCGCATCGAATCTCGGTCACCTTTGGCACCGTAAACCCGAAGAGAAGAAAGATGGATCATGCCGGATGTCTTATCCATTTTTGCTCGATTTGGAGGCGCAGACAGCTCGGAGCCTCGGAGTTCTTCCCTTCTGCTTTCCTGGAAGACTGCATCGCCATGGTGGTGAAGTCAGAAAGGTTAATCTTTTCCCTTGTGTAAAGATCAGGTAATAGTTAAAACAAAAAAAGATTCAATAACAGGATTGCAGAAGGAGGCTTCTGCACAAGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCACAGAATCGTGAAATTTTTGTAGG-TTGTAGGGAAAAATTCCATTGTAAATACGAGATATGAAACAGAAAGGAGGTGTCAGATCTACATCAACCTTTTGTAATTATGTAGTTAAAATAAAGAAATACTAGATGGTTTATATTGGAGGGACCTCTAGTTTTTTTCCCTCGTATAT-GTTGAATAAGAGCCTCACTATTTTTCTTAAAAAAAAAAA]

[+] EMBL AK063254             [TCTCAATCGACTTTTCAACACATTAAGTTGGACTATGACCGAGTCCTCTATGTCCATCCGTGAGATGCAAGAGAAGCGCCAGGTTGCAGATTTGCAGCAAAGAAAGTGCAGTGTTATTTTTGACATATCATGTAGTCTTGCAAGGATTTTGGAATTCTTCACCAGAGAGATTCCTCATGCATTCCTGATGGGGCCAGATATGAATCTGCGGAGGTTGGCTGAATTAGTTGTCTTTATTCTGAACCACATCATATTAGCAGCCGATGCAGAGTTCTTTGACATGACTCTAAGACGGCCAGGGCAACATCAAGAAAAAACAAATTGCACTATGATCTTGGCTCCTCTTGTTGGCATTATCCTCAATCTTATGGAAAGCAGCAGTACTTCAGGCCATAGGGAGTTAAATGATGTGATTACAGTGTTCACAAGCATGGATTGCCCTGCCACAATCCATTTTGGGTTGCAGTACCTACTGAGCTACAATTGGAGCAATGTTCTCCGAGGTGACGCTTCCCTTGCAAAGCTAGCTCAGCTTGAAGAATTCTCCCATTACTTTATGCACATCACTATGTCAGC GGATGGCAATGAAGAGCAAGGTTTCAGCACTGCCAGTAATGAAGAGAACAACTGCTGCATATGCTACAATTCCGATTCGGATACCACATTCGAGCCATGCCATCACAGGTCCTGCTACGGCTGCATAACCAGGCACCTCCTCAACAGCCAAAGGTGCTTCTTCTGCAATGCAGTGGTGACTTCAGTTACCAGGATAGCTGATTCGCGCATCGAATCTCGGTCACCTTTGGCACCGTAAACCCGAAGAGAAGAAAGATGGATCATGCCGGATGTCTTATCCATTTTTGCTCGATTTGGAGGCGCAGACAGCTCGGAGCCTCGGAGTTCTTCCCTTCTGCTTTCCTGGAAGACTGCATCGCCATGGTGGTGAAGTCAGAAAGGTTAATCTTTTCCCTTGTGTAAAGATCAGGTAATAGTTAAAACAAAAAAAGATTCAATAACAGGATTGCAGAAGGAGGCTTCTGCACAAGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCACAGAATCGTGAAATTTTTGTAGG TTGTAGGGAAAAATTCCATTGTAAATACGAGATATGAAACAGAAAGGAGGTGTCAGATCTACATCAACCTTTTGTAATTATGTAGTTAAAATAAAGAAATACTAGATGGTTTA                                                                            ]
[+] EMBL C72082               [                                                                                                                                                     TGGAATTCTTCACCAGAGAGATTCCTCATGCATTCCTGATGGGGCCAGATATGAATCTNCGGAGGTTGGCTGAATTAGTTGTCTTTATTCTGAACCACATCATATTAGCAGCCGATGCAGAGTTCTTTNACATGACTCTAAGACGGCCAGGGCAACATCAAGAAAAAACAAATTGCACTATGATCTTGGCTCCTCTTGTTGGCATTATCCTCAATCTTATGGAAAGCAGCAGTACTTCAGGCCATAGGGAGTTAAATGATGTGATTACAGTGTTCACAAGCATGGATTGCCCTGCCACAATCCATTTTGGGTTGCAGTACCTACTGAGCTACAATTGGAGCAATGTTCTCCGAGGTGACGCTTCCCTTGCAAAGCTAGCTCAGCTTGAAGAATTCTCCCATTACTTTATGCACATCACTATGTCAACGGGATGGCAATGAAGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU091866             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGNTACGGCTGCATAACCAGGCACCTCCTCAACAGCCAAAGGTGCTTCTTCTGCAATGCAGTGGTGACTTCAGTTACCAGGATAGCTGATTCGCGCATCGAATCTCGGTCACCTTTGGCACCGTAAACCCGAAGAGAAGAAAGATGGATCATGCCGGATGTCTTATCCATTTTTGCTCGATTTGGAGGCGCAGACAGCTCGGAGCCTCGGAGTTCTTCCCTTCTGCTTTCCTGGAAGACTGCATCGCCATGGTGGTGAAGTCAGAAAGGTTAATCTTTTCCCTTGTGTAAAGATCAGGTAATAGTTAAAACAAAAAAAGATTCAATAACAGGATTGCAGAAGGAGGCTTCTGCACAAGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCACAGAATCGTGAAATTTTTGTAGG TTGTAGGGAAAAATTCCATTGTAAATACGAGATATGAAACAGAAAGGAGGTGTCAGATCTACATCAACCTTTTGTAATTATGTAGTTAAAATAAAGAAATACTAGATGGTTTATATTGGAGGGACCTCTAGTTTTTTTCCCTCGTATAT GTTGAATAAGAGCCTCACTATTTTTCTTAAAAAAAAAAA]
[+] EMBL AA751125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTGGCACCGTAAACCCGAAGAGAAGAAAGATGGATCATGCCGTGTGTCTTATCCATTTTTGCTCGATTTGGAGGCGCAGACAG TCGGAGCCTCGGAGTTCTTCCCTTCTGCTTTCCTGGAAGACTGCATCGCCATGGTGGTG AGTCAGAAAGGTTAATCTTTT NCTTGTGTAAAGATCA GTAATAGT  AAACAAAAAg                                                                                                                                                                                                                                                                                               ]
[+] EMBL BQ906553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCCTTCTGCTTTCCTGGAAGACTGCATCGCCATGGTGGTGAAGTCAGAAAGGTTAATCTTTTCCCTTGTGTAAAGATCAGGTAATAGTTAAAACNAAAAAAGATTCAATAACAGGATTGCAGAAGGAGGCTTCTGCACAAGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCACAGAATCGTGAAATTTTTGTAGGCTTGTAGGGAAAAATTCCATTGTAAATACGAGATATAAAACAGAAAGGAGGTGTCAGATCTACATCAACCTTTTGTAATTATGTAGTTAAAATAAAGAAATACTAGATGGTTTATATTGGAGGGACCTCTAGTTTTTTTCCCTCGTATATNCTTGCATAAGAGCCTCACTATTTTTCTTAAAAAA     ]
[+] EMBL AU183079             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCACAGAATCGTGAAATTTTTGTAGG TTGTAGGGAAAAATTCCATTGTAAATACGAGATATGAAACAGAAAGGAGGTGTCAGATCTACATCAACCTTTTGTAATTATGTAGTTAAAATAAAGAAATACTAGATGGTTTATATTGGAGGGACCTCTAGTTTTTTTCCCTCGTATAT GTTGAATAAGAGCCTCACTATTTTTCTTAAAAAAAAAAA]


>consensus_9289#0 TCTCAATCGACTTTTCAACACATTAAGTTGGACTATGACCGAGTCCTCTATGTCCATCCG TGAGATGCAAGAGAAGCGCCAGGTTGCAGATTTGCAGCAAAGAAAGTGCAGTGTTATTTT TGACATATCATGTAGTCTTGCAAGGATTTTGGAATTCTTCACCAGAGAGATTCCTCATGC ATTCCTGATGGGGCCAGATATGAATCTGCGGAGGTTGGCTGAATTAGTTGTCTTTATTCT GAACCACATCATATTAGCAGCCGATGCAGAGTTCTTTGACATGACTCTAAGACGGCCAGG GCAACATCAAGAAAAAACAAATTGCACTATGATCTTGGCTCCTCTTGTTGGCATTATCCT CAATCTTATGGAAAGCAGCAGTACTTCAGGCCATAGGGAGTTAAATGATGTGATTACAGT GTTCACAAGCATGGATTGCCCTGCCACAATCCATTTTGGGTTGCAGTACCTACTGAGCTA CAATTGGAGCAATGTTCTCCGAGGTGACGCTTCCCTTGCAAAGCTAGCTCAGCTTGAAGA ATTCTCCCATTACTTTATGCACATCACTATGTCAGCGGATGGCAATGAAGAGCAAGGTTT CAGCACTGCCAGTAATGAAGAGAACAACTGCTGCATATGCTACAATTCCGATTCGGATAC CACATTCGAGCCATGCCATCACAGGTCCTGCTACGGCTGCATAACCAGGCACCTCCTCAA CAGCCAAAGGTGCTTCTTCTGCAATGCAGTGGTGACTTCAGTTACCAGGATAGCTGATTC GCGCATCGAATCTCGGTCACCTTTGGCACCGTAAACCCGAAGAGAAGAAAGATGGATCAT GCCGGATGTCTTATCCATTTTTGCTCGATTTGGAGGCGCAGACAGCTCGGAGCCTCGGAG TTCTTCCCTTCTGCTTTCCTGGAAGACTGCATCGCCATGGTGGTGAAGTCAGAAAGGTTA ATCTTTTCCCTTGTGTAAAGATCAGGTAATAGTTAAAACAAAAAAAGATTCAATAACAGG ATTGCAGAAGGAGGCTTCTGCACAAGGTGGGAAGCCAGTACCACCCAAAGAAGGATTCAC AGAATCGTGAAATTTTTGTAGGTTGTAGGGAAAAATTCCATTGTAAATACGAGATATGAA ACAGAAAGGAGGTGTCAGATCTACATCAACCTTTTGTAATTATGTAGTTAAAATAAAGAA ATACTAGATGGTTTATATTGGAGGGACCTCTAGTTTTTTTCCCTCGTATATGTTGAATAA GAGCCTCACTATTTTTCTTAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)