|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1993 fasta sequence
[CCTCCAAGGTGACCACCTCCTCCCCACCGCCCCCCACATCCGGTTCCCCGAGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGATGAACCCATCGTCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCATAAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGTGGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGGATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGGAGATGCATACTCATTTGGGGCTAATTGCTGGGGCCAGCTTGGCCTTGGGGATACTGAAGATCGGTTCAAGCCATGCCTTATTAGGTCTTTGCAAAGCATCAAAATCACACAGGCTGCAGTTGGATCAAGGCAGACAATGCTTGTGAGTGACACAGGAAGTGTCTATGCATTTGGGAAGGGTAGCTTTGTGTGGGAAGAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGTCAGGTTTACACGATCTCGTGGGGGCGAACCGAGAGGCTTGGCCATAGTTCGGATCCTTCAGATGTTGAGCCTCGTCTTCTCTCTGGACCACTTGAGGGTGTTCTTGTTGCACAGATTTCTGCTGGGAATTGCTATCTCCTTATGTTGGCCTACCAGCCAACTGGAATGTCAGTGTATTCTGTAGGCTGTGGTTTAGGAGGCAAGCTTGGTCACGGATGCAAAAACAATAAGGGCACCCCCAAGTTGATTGAACATTTCCTGACATTGAGCTTTAATCCGGTTTCAGTTGCGGCTGGCACTTGGCATGCTGCAGCTCTAGGTGACGATGGGCGTGTCTGCACCTGGGGTTGGGGCCATACTGGTTGTTTGGGACATGGCGATGAGGAGTACAGGGTTCTCCCCACTGTGGTTCAAGGATTGAGCAATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGATAACGGCGATACATACTCCTTTGGATCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGATGAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGTAGAATCACTGAAGGTGTTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAAATGGGATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGAGGGATCAAAGGCCAGCTTGGTGTCAAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCAGAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTGGTGACCATTTGCAATGACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATGTTAGCATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAGTAACAGTGTGGTTGTTGGTAGTTCTTGCATTTTGAATTGTTGGTGCAGCCAAGTCCTGACC]
[+] EMBL AK102225 [CCTCCAAGGTGACCACCTCCTCCCCACCGCCCCCCACATCCGGTTCCCCGAGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGATGAACCCATCGTCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCATAAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGTGGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGGATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGGAGATGCATACTCATTTGGGGCTAATTGCTGGGGCCAGCTTGGCCTTGGGGATACTGAAGATCGGTTCAAGCCATGCCTTATTAGGTCTTTGCAAAGCATCAAAATCACACAGGCTGCAGTTGGATCAAGGCAGACAATGCTTGTGAGTGACACAGGAAGTGTCTATGCATTTGGGAAGGGTAGCTTTGTGTGGGAAGAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGTCAGGTTTACACGATCTCGTGGGGGCGAACCGAGAGGCTTGGCCATAGTTCGGATCCTTCAGATGTTGAGCCTCGTCTTCTCTCTGGACCACTTGAGGGTGTTCTTGTTGCACAGATTTCTGCTGGGAATTGCTATCTCCTTATGTTGGCCTACCAGCCAACTGGAATGTCAGTGTATTCTGTAGGCTGTGGTTTAGGAGGCAAGCTTGGTCACGGATGCAAAAACAATAAGGGCACCCCCAAGTTGATTGAACATTTCCTGACATTGAGCTTTAATCCGGTTTCAGTTGCGGCTGGCACTTGGCATGCTGCAGCTCTAGGTGACGATGGGCGTGTCTGCACCTGGGGTTGGGGCCATACTGGTTGTTTGGGACATGGCGATGAGGAGTACAGGGTTCTCCCCACTGTGGTTCAAGGATTGAGCAATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGATAACGGCGATACATACTCCTTTGGATCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGATGAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGTAGAATCACTGAAGGTGTTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAAATGGGATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGAGGGATCAAAGGCCAGCTTGGTGTCAAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCAGAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTGGTGACCATTTGCAATGACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATGTTAGCATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAGTAACAGTGTGGTTGTTGGTAGTTCTTGCATTTTGAATTGTTGGTGCAGCCAAGTCCTGACC]
[+] EMBL OSS4817A [ AGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGATGAACCCATCGTCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTG CCAATGGACGCAGNTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCNCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGNTGCACTGGAGGCTACATG ACA TCTTCAG AANCC ]
[+] EMBL CA756181 [ TCACCAGACGAATTCTCCAACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCATAAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGTGGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGGATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGNAGATGCATACTCATTTGGGGCTta ]
[+] EMBL BE230783 [ TGCTT TGAGTGACACAGGGAGTGTCTATGCATTTGGGAAGGGTAGCTTTTTGTGGGAAGAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTA ]
[+] EMBL AA751413 [ CTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGTGTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGTCAGGTTTACACGATCTCGTGGGGGCGAACCGAGA GCTTGG CATAGTTCGGATCCTTCAGATGTTGAGCCTCGTCTTCTCTCTGGACCA ]
consensusID : consensus_9290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[GCTTAGAAATACTGAACTGCCAACATGATCGAATAATTCAATGCTTCCTTTAATTTAACCTCCATTGCAAATGATTTGCTTATTAGTGATGCCGGGGTTTGCACTATAATGTGAAGTAGTAGTAATTTGCCTCTCTTCTTTTATTCTTGTCAGACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATAT]
[+] EMBL CB640727 [GCTTAGAAATACTGAACTGCCAACATGATCGAATAATTCAATGCTTCCTTTAATTTAACCTCCATTGCAAATGATTTGCTTATTAGTGATGCCGGGGTTTGCACTATAATGTGAAGTAGTAGTAATTTGCCTCTCTTCTTTTATTCTTGTCAGACTGAGTACTCTGCTCCCATAATCCTATTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCAAGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCATCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCAGGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAGCTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCAAATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9290#0 ----------------------------CCTCCAAGGTGACCACCTCCTCCCCACCGCCC 32
consensus_9290#1 GCTTAGAAATACTGAACTGCCAACATGATCGAATAATTCAATGCTTCCTTTAATTTAACC 60
* * * * * **** **
consensus_9290#0 CCCAC--------ATCCGGTTCCCCGAGGTTGCAGCCTCTGCAGCCTTGCGAGGATCAGA 84
consensus_9290#1 TCCATTGCAAATGATTTGCTTATTAGTGATGCCGGGGTTTGCACTATAATGTGAAGTAGT 120
*** ** * ** * * * * * * **** * * * * **
consensus_9290#0 TGAACCCATCGTCACCAGACGAATTCT---CCAACTGAGTACTCTGCTCCCATAATCCTA 141
consensus_9290#1 AGTAATTTGCCTCTCTTCTTTTATTCTTGTCAGACTGAGTACTCTGCTCCCATAATCCTA 180
* * * ** * ***** * ***************************
consensus_9290#0 TTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCA 201
consensus_9290#1 TTTATCCACACAGCGAGGGGCACTGCAAGAAGCATGCAGTGCCCAATGGACGCAGCTGCA 240
************************************************************
consensus_9290#0 AGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCA 261
consensus_9290#1 AGTGGAACTTCGCCTGTGATGCAGTTCCATGGCATTGTTGATGAGCCACCCTCCCATTCA 300
************************************************************
consensus_9290#0 TCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCA 321
consensus_9290#1 TCTCCGCTGCACACGGCGCTGGAACGTTCGCAGCGCCATTGCTATGGTCATGAAACCCCA 360
************************************************************
consensus_9290#0 GGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAG 381
consensus_9290#1 GGAGAATTCCCCCTTGCTGTGAGCCCCTCCATTGTGCTACATGTGCTCTCCACCTGCGAG 420
************************************************************
consensus_9290#0 CTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCA 441
consensus_9290#1 CTAGATCCTAAAGATCTCGCTGCACTGGAGGCTACATGTACATTCTTCAGTAAACCTGCA 480
************************************************************
consensus_9290#0 AATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATATGTGCCAT 501
consensus_9290#1 AATTTCGAGCCAAACTTTGCTCTATCGCTTCCAGAGGTTGCGGCATTTGATAT------- 533
*****************************************************
consensus_9290#0 AAAAGACCCATGGTTAAGCTAATGGCACAGCAGGAACGGGAGCAACTGAAGCAGAGGTGT 561
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GGTGGATCTTGGAAGCTTGTTTTCAAGTATATTGTGGCTAGAGAAAGGAATTACTCTCGG 621
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 ATTGTCGCCGGGCCGGGCCATAGTATTGTTGTCACCACAAAGGGAGATGCATACTCATTT 681
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GGGGCTAATTGCTGGGGCCAGCTTGGCCTTGGGGATACTGAAGATCGGTTCAAGCCATGC 741
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 CTTATTAGGTCTTTGCAAAGCATCAAAATCACACAGGCTGCAGTTGGATCAAGGCAGACA 801
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 ATGCTTGTGAGTGACACAGGAAGTGTCTATGCATTTGGGAAGGGTAGCTTTGTGTGGGAA 861
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GAGCTTTCTGATGCAGCTGATCACATTACCACTCCTAAGATAGTGGAGTCGCTAAAGGGT 921
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GTGTTTGTAGTTCAAGCAGCCATTGGTGGTTACTTCTCTGCGTTTCTATCTAGAGAGGGT 981
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 CAGGTTTACACGATCTCGTGGGGGCGAACCGAGAGGCTTGGCCATAGTTCGGATCCTTCA 1041
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GATGTTGAGCCTCGTCTTCTCTCTGGACCACTTGAGGGTGTTCTTGTTGCACAGATTTCT 1101
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GCTGGGAATTGCTATCTCCTTATGTTGGCCTACCAGCCAACTGGAATGTCAGTGTATTCT 1161
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GTAGGCTGTGGTTTAGGAGGCAAGCTTGGTCACGGATGCAAAAACAATAAGGGCACCCCC 1221
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 AAGTTGATTGAACATTTCCTGACATTGAGCTTTAATCCGGTTTCAGTTGCGGCTGGCACT 1281
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 TGGCATGCTGCAGCTCTAGGTGACGATGGGCGTGTCTGCACCTGGGGTTGGGGCCATACT 1341
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GGTTGTTTGGGACATGGCGATGAGGAGTACAGGGTTCTCCCCACTGTGGTTCAAGGATTG 1401
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 AGCAATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGAT 1461
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 AACGGCGATACATACTCCTTTGGATCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGAT 1521
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGTAGAATCACTGAAGGTG 1581
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 TTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAA 1641
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 ATGGGATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGA 1701
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GGGATCAAAGGCCAGCTTGGTGTCAAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCA 1761
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTGGTGACCATTTGCAATG 1821
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 ACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATG 1881
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 TTAGCATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAGTAACAGTGT 1941
consensus_9290#1 ------------------------------------------------------------
consensus_9290#0 GGTTGTTGGTAGTTCTTGCATTTTGAATTGTTGGTGCAGCCAAGTCCTGACC 1993
consensus_9290#1 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||