These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 873 fasta sequence [ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACG-CATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCA-TATCGCAACATTGTAGAATGCAGTCCATATGGACGAAAATATCATCACC-GTGTTTGGTCTGCTCACCGGCCAAAAGATATAGAGAAAAAAACTCGCGGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATACACCCTCGCTTCTCTGGCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCCACTTTCAATGCCCCTTTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTCCGGTCCGCCCTTTATTCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGTTTTGACTCGACCCGCCGTGCGCCAGTCGCCCCACATTCTTTATTTTCC] [+] EMBL AK059096 [ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACG CATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCA TATCGCAACATTGTAGAATGCAGTCCATATGGACGAAAATATCATCACC GTGT ] [+] EMBL CA758224 [ CTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGATATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGTGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTACAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCCATCGTTTTTTTAGTTCCTCATCTTGGGCTGCGGCACATATGTCTTGTCGAATCAAGCTGCCAGTATCTCACCATTGCAGATTGCAGTGCATATGGACGAAAATATCATCTCCAGTGCTTGGTCTGCTCACCGGCCAAAAGATATAGAGAAAAAAACTCGCGGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATACACCCTCGCTTCTCTGGCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCCACTTTCAATGCCCCTTTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTCCGGTCCGCCCTTTATTCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGTTTTGACTCGACCCGCCGTGCGCCAGTCGCCCCACATTCTTTATTTTCC] consensusID : consensus_9294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 431 fasta sequence [GATTCGGCACGAGTGGCAANNAGGACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGNGCCAAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCAT-CGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACGAAAATATCATCACCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGGTGATAATACGCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGATTGAAAAAAAAAAAAAAAAAAA] [+] EMBL AA751847 [GATTCGGCACGAGTGGCAANNAGGACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGNGCCAAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCAT CGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACNAAAATATCATCACCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGGTGATAATACGCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGATTG ] [+] EMBL AU174812 [ atcaAGGNCCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATTTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGNACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCAT CGTTTTTTTAGTTCCTCATATTGGGCTGTGTCANATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACGAAAATATCATCCCCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGNGTCATNTGGATGGTGATAATACNCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGNTTNAAAAAAAAAAAAAAAAAAA] [+] EMBL AU175207 [ GTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGC CNCACGCTTG GACGNCA ATNCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTAGAATGCAGTCCATATGGACGAAAATATCATCACCATGTTTGTTTG ] consensusID : consensus_9294#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGNGCGGCCGAAGCGGGAGAAGAAAGATCGAGCGCATCAAGGACCGCNTCGAGGTGCCCCGNTTCAACCCGTTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAAGNCNAAGNGNGAGTTNCCNN] [+] EMBL OS14223A [CCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGNGCGGCCGAAGCGGGAGAAGAAAGATCGAGCGCATCAAGGACCGCNTCGAGGTGCCCCGNTTCAACCCGTTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAAGNCNAAGNGNGAGTTNCCNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9294#0 ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAG 60 consensus_9294#2 -------------------------------------CCAAAGGCGGCGGCGGCGGCGAG 23 consensus_9294#1 -------------------------------------GATTCGGCACGAGTGGCAANNAG 23 *** * *** ** consensus_9294#0 CTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTC-GTGCC 119 consensus_9294#2 CTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTC-GTGCC 82 consensus_9294#1 GACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGNGCC 83 * * * * ** * * * ** * ** * * * * ** * *** consensus_9294#0 GGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAA 179 consensus_9294#2 GGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAA 142 consensus_9294#1 AAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAGGCTACCTA-GGGTTTTCCTTTCC 142 ** * ** * * ** ** * ** **** *** consensus_9294#0 GAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCG-GCCGAAGCGGG 238 consensus_9294#2 GAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGNGCG-GCCGAAGCGGG 201 consensus_9294#1 CTTTTTCGATTTGGTACTCTTGTCCAA---CTCTTGCGCCTGCGCCCACGCTTGCGTGGG 199 * * * ** *** *** * ** * ** * ** * *** consensus_9294#0 AGAAGAA-GATCG---AGCGCATCAA---GGACCGCGTCGAGGTGCCCCGCTCCACCCCG 291 consensus_9294#2 AGAAGAAAGATCG---AGCGCATCAA---GGACCGCNTCGAGGTGCCCCGNTTCAACCCG 255 consensus_9294#1 CACGCATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAA 259 * * * ** * *** ** * * ** * * * consensus_9294#0 T--GGCCGCTCCCCTTCAAGCTCA-TCTGAGCCAAA--GCCCA-GCGCGAGCTCCCCCCC 345 consensus_9294#2 TTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAA--GNCNAAGNGNGAGTTNCCNN-- 311 consensus_9294#1 GCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACGAAAATATCATCACCATGT 319 * * ** * * * * * * * * * * ** consensus_9294#0 GTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCC 405 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 TTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGGTGATAATACGCAGTTTATG 379 consensus_9294#0 AACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCATCGTTTTTTTAGTTCCTCATAT 465 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ATAATTGGAAATGGAATTTACGGTTTTGGATTGAAAAAAAAAAAAAAAAAAA-------- 431 consensus_9294#0 TGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTAGAATGC 525 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ------------------------------------------------------------ consensus_9294#0 AGTCCATATGGACGAAAATATCATCACCGTGTTTGGTCTGCTCACCGGCCAAAAGATATA 585 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ------------------------------------------------------------ consensus_9294#0 GAGAAAAAAACTCGCGGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATAC 645 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ------------------------------------------------------------ consensus_9294#0 ACCCTCGCTTCTCTGGCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCC 705 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ------------------------------------------------------------ consensus_9294#0 ACTTTCAATGCCCCTTTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTC 765 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ------------------------------------------------------------ consensus_9294#0 CGGTCCGCCCTTTATTCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGT 825 consensus_9294#2 ------------------------------------------------------------ consensus_9294#1 ------------------------------------------------------------ consensus_9294#0 TTTGACTCGACCCGCCGTGCGCCAGTCGCCCCACATTCTTTATTTTCC 873 consensus_9294#2 ------------------------------------------------ consensus_9294#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||