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Oryza sativa
cluster # 9297 cluster # 9297       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9297#0 length = 2130 sequences # 3  
consensus_9297#1 length = 706 sequences # 1  
consensus_9297#2 length = 603 sequences # 1  
consensus_9297#3 length = 528 sequences # 1  

consensusID : consensus_9297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2130
fasta sequence
                              [CAGAAGCGGCAGCGTACTCGTCGATCGGTGCAGGTCCGTGCAAGTGCAAGAGAGTGCAGTGCGGTACAGCGCGCGTGTGGTTGCTGAGCACTTGTGCTGCGCGGGCTACCTACCTGTTTCGAGCCAGGTTTGGTTCAGCTAGCGTATTATAGTACAGAGACTCCACTTCGATCCACAAAATTAAGGCCAGACTTAGCAAGCTGCTGACGTCGTGATAAGCGGAGCGAGCGCCTCGCTGCCTCTGAGAGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGTGAGCACCGCGAGCACGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCACCGGCATGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCAGCTGCTGCTGCTGTTGCAGCGAGCAGTACGGCCGAGAAGCGTGCGGCCGCCGTCGTCGTCCCCGACGCGGCGCTGACGATGAACGGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCGCCGGAGGATCTGCCGGCGCCAGCCGCATTGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCATGAACATCAGGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGTGCCGGCGTCGCTGGCTCTGGCGGCGGATCCGCTTGCTTCCTTGGTAGACACAGCGTTCATCGGCCGCTTAGGTTCGGTGGAGATAGCTGCTGTTGGTGTTTCAATTGCCATATTTAACCAAGTATCCAAAGTCTGTATTTACCCCCTTGTTAGCGTTACAACATCATTTGTGGCTGAAGAAGACGCTATCATCAGTAAATGTATAGAAGAAAACAGCAGCCAAGATCTGGAGAAAGCTTCTCCTGTGGATTCAGAAACCAACAATCTGCCTGTATCTGGTCCTGATAAGGTAGAATGTGTCAATTCATGTATTCCCACCGAGTGTACAAATCCCTCCGATCAAGGGTGCAAGAGAAAGTACATACCTTCTGTGACATCAGCAGTAATAGTTGGCTCATTTCTTGGGCTACTTCAGGCTGTCTTCCTGGTCTTTTCAGCAAAA-TTTGTATTGAATATCATGGGTGTCAAGAATGATTCACCAATGCTAAGGCCTGCAGTTCGCTACCTAACAATCAGATCACTTGGTGCTCCCGCCGTATTACTGTCTCTGGCCATGCAGGGTGTTTTCCGTGGTTTCAAAGACACAAAGACACCATTGTATGCCACTGTGGTTGGAGATGCAGCAAACATCATACTAGACCCAATTTTGATGTTTGTTTGTCACATGGGTGTCACTGGCGCAGCAGTTGCCCATGTCATTTCTCAGTACCTGATAACGATGATACTGCTGTGTCGGCTCATCCGGCAAGTTGATGTTATCCCACCTAGCCTTAAATCCCTCAAATTTGGGCGGTTTCTTGGATGCGGGTTCCTGCTGCTTGCAAGGGTTGTGGCAGTGACTTTCTGCGTCACGCTGGCGTCGTCGTTAGCCGCTCGCCATGGACCTACCATCATGGCGGCCTTCCAGATCTGCTGCCAGCTCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAGGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAGCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGATCGATGTCATTCACAAAGGCATTCCTTTTGTCGCTGGCACACAGACGATAAATTCACTAGCCTTCGTGTTCGATGGCATCAACTTCGGAGCATCAGACTACACATACTCAGCTTACTCCATGGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTTGCT]

[+] EMBL AK101556             [CAGAAGCGGCAGCGTACTCGTCGATCGGTGCAGGTCCGTGCAAGTGCAAGAGAGTGCAGTGCGGTACAGCGCGCGTGTGGTTGCTGAGCACTTGTGCTGCGCGGGCTACCTACCTGTTTCGAGCCAGGTTTGGTTCAGCTAGCGTATTATAGTACAGAGACTCCACTTCGATCCACAAAATTAAGGCCAGACTTAGCAAGCTGCTGACGTCGTGATAAGCGGAGCGAGCGCCTCGCTGCCTCTGAGAGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGTGAGCACCGCGAGCACGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCACCGGCATGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCAGCTGCTGCTGCTGTTGCAGCGAGCAGTACGGCCGAGAAGCGTGCGGCCGCCGTCGTCGTCCCCGACGCGGCGCTGACGATGAACGGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCGCCGGAGGATCTGCCGGCGCCAGCCGCATTGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCATGAACATCAGGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGTGCCGGCGTCGCTGGCTCTGGCGGCGGATCCGCTTGCTTCCTTGGTAGACACAGCGTTCATCGGCCGCTTAGGTTCGGTGGAGATAGCTGCTGTTGGTGTTTCAATTGCCATATTTAACCAAGTATCCAAAGTCTGTATTTACCCCCTTGTTAGCGTTACAACATCATTTGTGGCTGAAGAAGACGCTATCATCAGTAAATGTATAGAAGAAAACAGCAGCCAAGATCTGGAGAAAGCTTCTCCTGTGGATTCAGAAACCAACAATCTGCCTGTATCTGGTCCTGATAAGGTAGAATGTGTCAATTCATGTATTCCCACCGAGTGTACAAATCCCTCCGATCAAGGGTGCAAGAGAAAGTACATACCTTCTGTGACATCAGCAGTAATAGTTGGCTCATTTCTTGGGCTACTTCAGGCTGTCTTCCTGGTCTTTTCAGCAAAA TTTGTATTGAATATCATGGGTGTCAAGAATGATTCACCAATGCTAAGGCCTGCAGTTCGCTACCTAACAATCAGATCACTTGGTGCTCCCGCCGTATTACTGTCTCTGGCCATGCAGGGTGTTTTCCGTGGTTTCAAAGACACAAAGACACCATTGTATGCCACTGTGGTTGGAGATGCAGCAAACATCATACTAGACCCAATTTTGATGTTTGTTTGTCACATGGGTGTCACTGGCGCAGCAGTTGCCCATGTCATTTCTCAGTACCTGATAACGATGATACTGCTGTGTCGGCTCATCCGGCAAGTTGATGTTATCCCACCTAGCCTTAAATCCCTCAAATTTGGGCGGTTTCTTGGATGCGGGTTCCTGCTGCTTGCAAGGGTTGTGGCAGTGACTTTCTGCGTCACGCTGGCGTCGTCGTTAGCCGCTCGCCATGGACCTACCATCATGGCGGCCTTCCAGATCTGCTGCCAGCTCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGTCGCTGGGCAGGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGTTGCGACATCTCGTGTACTACAGCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCTTGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGATCGATGTCATTCACAAAGGCATTCCTTTTGTCGCTGGCACACAGACGATAAATTCACTAGCCTTCGTGTTCGATGGCATCAACTTCGGAGCATCAGACTACACATACTCAGCTTACTCCATGGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTTGC ]
[+] EMBL AU062723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       nGTATTCCNACCGNGTGTACAAATCCNNCCGATCAAGGGTGCAAGNGAAAGTACATACCTNNTGTGACATCAGCAGTAATAGTTGGCTCATTTCTTGGGCTACTTCAGGCTGTCTTCCTGGTCTTTTCAGCAAAANNTTGTATTGAATATCATGGGTGTCAAGAATGATTCACCAATGCTAAGGCCTGCAGTGCGCTNCCNAACAATCAGATCACTTGGTGCTCCCGCCGTATTACTGTCTCTGGCCATGCAGGGTGNTTTCCGTGGTTTCAAAGACACAAAGNCACCCATGTgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BI305615             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ggaacgaggCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTTGCT]


>consensus_9297#0 CAGAAGCGGCAGCGTACTCGTCGATCGGTGCAGGTCCGTGCAAGTGCAAGAGAGTGCAGT GCGGTACAGCGCGCGTGTGGTTGCTGAGCACTTGTGCTGCGCGGGCTACCTACCTGTTTC GAGCCAGGTTTGGTTCAGCTAGCGTATTATAGTACAGAGACTCCACTTCGATCCACAAAA TTAAGGCCAGACTTAGCAAGCTGCTGACGTCGTGATAAGCGGAGCGAGCGCCTCGCTGCC TCTGAGAGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGTGAGCACCG CGAGCACGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCAC CGGCATGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCAGCTGCTGCTGCTGTTGCAGC GAGCAGTACGGCCGAGAAGCGTGCGGCCGCCGTCGTCGTCCCCGACGCGGCGCTGACGAT GAACGGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCGCCGGAGGATCT GCCGGCGCCAGCCGCATTGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCAT GAACATCAGGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGT GCCGGCGTCGCTGGCTCTGGCGGCGGATCCGCTTGCTTCCTTGGTAGACACAGCGTTCAT CGGCCGCTTAGGTTCGGTGGAGATAGCTGCTGTTGGTGTTTCAATTGCCATATTTAACCA AGTATCCAAAGTCTGTATTTACCCCCTTGTTAGCGTTACAACATCATTTGTGGCTGAAGA AGACGCTATCATCAGTAAATGTATAGAAGAAAACAGCAGCCAAGATCTGGAGAAAGCTTC TCCTGTGGATTCAGAAACCAACAATCTGCCTGTATCTGGTCCTGATAAGGTAGAATGTGT CAATTCATGTATTCCCACCGAGTGTACAAATCCCTCCGATCAAGGGTGCAAGAGAAAGTA CATACCTTCTGTGACATCAGCAGTAATAGTTGGCTCATTTCTTGGGCTACTTCAGGCTGT CTTCCTGGTCTTTTCAGCAAAATTTGTATTGAATATCATGGGTGTCAAGAATGATTCACC AATGCTAAGGCCTGCAGTTCGCTACCTAACAATCAGATCACTTGGTGCTCCCGCCGTATT ACTGTCTCTGGCCATGCAGGGTGTTTTCCGTGGTTTCAAAGACACAAAGACACCATTGTA TGCCACTGTGGTTGGAGATGCAGCAAACATCATACTAGACCCAATTTTGATGTTTGTTTG TCACATGGGTGTCACTGGCGCAGCAGTTGCCCATGTCATTTCTCAGTACCTGATAACGAT GATACTGCTGTGTCGGCTCATCCGGCAAGTTGATGTTATCCCACCTAGCCTTAAATCCCT CAAATTTGGGCGGTTTCTTGGATGCGGGTTCCTGCTGCTTGCAAGGGTTGTGGCAGTGAC TTTCTGCGTCACGCTGGCGTCGTCGTTAGCCGCTCGCCATGGACCTACCATCATGGCGGC CTTCCAGATCTGCTGCCAGCTCTGGCTCGCCACATCTCTTCTTGCTGATGGACTTGCCGT CGCTGGGCAGGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGTTGTTGT TGCGACATCTCGTGTACTACAGCTGAGCATTGTTCTTGGCATGGGTCTCACTGTTGTGCT TGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGATCGATGT CATTCACAAAGGCATTCCTTTTGTCGCTGGCACACAGACGATAAATTCACTAGCCTTCGT GTTCGATGGCATCAACTTCGGAGCATCAGACTACACATACTCAGCTTACTCCATGGTTGG TGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGG TATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGAAT GGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATG GCGATTATTATTAATCCTCAGCGTTTTGCT



consensusID : consensus_9297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence
                              [GCTTAAGCTTACGCTGCGACGCGTCCCCCCTGTGCCGCTGCCGCCGCCGCCGCCGTGCTTTCTGTTTTCCGCCCGTTGCTTGCATCCTCACGCGCGTGCGAGAGGGGGGGCGTACGGATTTCGTTGGTTGTAACCGACTGGCACCGGTAGACACGTTACCGCCGGTGGCCTCTGGCACACCTCTCGCCGACGTCGTCGTCTGCTGATCGTCCTCTGCCGAGTTGCCCCTGTCGCAGCTGCTGACGTCATGATAAGCGGAGCGAGCGCCTCGCTGCCTCTGAGAGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGGGAGCACCGCGAGCACGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCACCGGCATGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCATCTGCTGCTGCTGTTGCAGCGAGCAGTACGGCCGACAAGCGTGCGGCCGCCGGCGTCGTCCCCGACGCGGCGCTGACGATGAACGGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCACCGGAGGATCTGCCGGCGCCAGCCGCATTGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCATGAACATCATGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGAGCCGGCGTCA]

[+] EMBL CB680117             [GCTTAAGCTTACGCTGCGACGCGTCCCCCCTGTGCCGCTGCCGCCGCCGCCGCCGTGCTTTCTGTTTTCCGCCCGTTGCTTGCATCCTCACGCGCGTGCGAGAGGGGGGGCGTACGGATTTCGTTGGTTGTAACCGACTGGCACCGGTAGACACGTTACCGCCGGTGGCCTCTGGCACACCTCTCGCCGACGTCGTCGTCTGCTGATCGTCCTCTGCCGAGTTGCCCCTGTCGCAGCTGCTGACGTCATGATAAGCGGAGCGAGCGCCTCGCTGCCTCTGAGAGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGGGAGCACCGCGAGCACGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCACCGGCATGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCATCTGCTGCTGCTGTTGCAGCGAGCAGTACGGCCGACAAGCGTGCGGCCGCCGGCGTCGTCCCCGACGCGGCGCTGACGATGAACGGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCACCGGAGGATCTGCCGGCGCCAGCCGCATTGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCATGAACATCATGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGAGCCGGCGTCA]


>consensus_9297#1 GCTTAAGCTTACGCTGCGACGCGTCCCCCCTGTGCCGCTGCCGCCGCCGCCGCCGTGCTT TCTGTTTTCCGCCCGTTGCTTGCATCCTCACGCGCGTGCGAGAGGGGGGGCGTACGGATT TCGTTGGTTGTAACCGACTGGCACCGGTAGACACGTTACCGCCGGTGGCCTCTGGCACAC CTCTCGCCGACGTCGTCGTCTGCTGATCGTCCTCTGCCGAGTTGCCCCTGTCGCAGCTGC TGACGTCATGATAAGCGGAGCGAGCGCCTCGCTGCCTCTGAGAGAGGCCGGTATAAGTAC GGGCGCGTCTGGCTCTCTGCTTGGCTGGGAGCACCGCGAGCACGTACAGCTCCGCCTCAG ACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCACCGGCATGGCTGGTCTGAAGAAGAT GGAGGAGGTCACAGCATCTGCTGCTGCTGTTGCAGCGAGCAGTACGGCCGACAAGCGTGC GGCCGCCGGCGTCGTCCCCGACGCGGCGCTGACGATGAACGGTGCCGCCGGCGCGGAGGA GAAGACGGCGGCGGCTGCGGCGGCACCGGAGGATCTGCCGGCGCCAGCCGCATTGTCCGG CTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCATGAACATCATGAGCGTGTTCAAGCT TGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGAGCCGGCGTCA



consensusID : consensus_9297#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [ATGAAGTTGGGGCTGAATTTTCACAAAGGACATCGACGTGATCGATGTCATTCACAAAGGCATTCCTGTAAGAATATCTGTCAAGATGTTCAGAGGGTAGCAACATGTTTAACTATTTTCCAAGATTCAGACATTGACTGATAGCTTTGTTTTGGGGTTCAGTTTGTCGCTGGCACACAGACGATAAATTCACTAGCCTTCGTGTTCGATGGCATCAACTTCGGAGCATCAGACTACACATACTCAGCTTACTCCATGGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGGTATATCAGTATAGGATATACTACAGCCTTATCCGCTCTTCATTGCAGCCATTTCTTCAGTAGCTCTTAGCTCTTAGCCTTTAGGATTCATCATATACTAGGTTGCTAATTACTTCTGCTCTATCTGCAGAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTTGCT]

[-] EMBL CB680118             [ATGAAGTTGGGGCTGAATTTTCACAAAGGACATCGACGTGATCGATGTCATTCACAAAGGCATTCCTGTAAGAATATCTGTCAAGATGTTCAGAGGGTAGCAACATGTTTAACTATTTTCCAAGATTCAGACATTGACTGATAGCTTTGTTTTGGGGTTCAGTTTGTCGCTGGCACACAGACGATAAATTCACTAGCCTTCGTGTTCGATGGCATCAACTTCGGAGCATCAGACTACACATACTCAGCTTACTCCATGGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGGTATATCAGTATAGGATATACTACAGCCTTATCCGCTCTTCATTGCAGCCATTTCTTCAGTAGCTCTTAGCTCTTAGCCTTTAGGATTCATCATATACTAGGTTGCTAATTACTTCTGCTCTATCTGCAGAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTTGCT]


>consensus_9297#2 ATGAAGTTGGGGCTGAATTTTCACAAAGGACATCGACGTGATCGATGTCATTCACAAAGG CATTCCTGTAAGAATATCTGTCAAGATGTTCAGAGGGTAGCAACATGTTTAACTATTTTC CAAGATTCAGACATTGACTGATAGCTTTGTTTTGGGGTTCAGTTTGTCGCTGGCACACAG ACGATAAATTCACTAGCCTTCGTGTTCGATGGCATCAACTTCGGAGCATCAGACTACACA TACTCAGCTTACTCCATGGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTT TCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGG ACCATAGCTAGCACTTGGAGGTATATCAGTATAGGATATACTACAGCCTTATCCGCTCTT CATTGCAGCCATTTCTTCAGTAGCTCTTAGCTCTTAGCCTTTAGGATTCATCATATACTA GGTTGCTAATTACTTCTGCTCTATCTGCAGAATGGGGGCAGCAAGGGGGCCATGGGTGTT CCTCCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTT GCT



consensusID : consensus_9297#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence
                              [CGAGACNNGCCAAGTATCCGAAGTCTGTNTTTACCCCCTCTGTTAGNGTTACAACNTCATTTGTGGCTGAAGAAGACGCCNNCATCNGTAAATGTNTAGAACAAAACNGNAGCCAAGATCTGGANAAAGCTTCTCCTGTGGATTCAGAAACAACAATCTGCCTGTNTCTGGTCCTGANCAGGTNGAATGTGTCAATTCATGTTTTCCCACCGAGTGTNCAAATCCCTCCGATCTAGGGTGCCAGANAAACTACATACCTTCTGTGACATCACAATAATAGTTGGCTCATATCTTGGGCTACTTCAGGCTGTCTTCCCGGTCTTTTCAGCACAATTTGTATGGAATATCATGGGTGTCTNGAATGATTCCCCANTGCTAAGGGCTGCANTTCGCTCCTANCAATCAAATCACTTGGTGCTCCCGGCGTATTACTGTCTCTGGGCATGCAAGGTGTTTTCCGTGGTTTCCAANACACCAANACCCATTGTNTGCCNCTGTGGTTGGAGATGCACAAACATCATACTACAC]

[+] EMBL AA752012             [CGAGACNNGCCAAGTATCCGAAGTCTGTNTTTACCCCCTCTGTTAGNGTTACAACNTCATTTGTGGCTGAAGAAGACGCCNNCATCNGTAAATGTNTAGAACAAAACNGNAGCCAAGATCTGGANAAAGCTTCTCCTGTGGATTCAGAAACAACAATCTGCCTGTNTCTGGTCCTGANCAGGTNGAATGTGTCAATTCATGTTTTCCCACCGAGTGTNCAAATCCCTCCGATCTAGGGTGCCAGANAAACTACATACCTTCTGTGACATCACAATAATAGTTGGCTCATATCTTGGGCTACTTCAGGCTGTCTTCCCGGTCTTTTCAGCACAATTTGTATGGAATATCATGGGTGTCTNGAATGATTCCCCANTGCTAAGGGCTGCANTTCGCTCCTANCAATCAAATCACTTGGTGCTCCCGGCGTATTACTGTCTCTGGGCATGCAAGGTGTTTTCCGTGGTTTCCAANACACCAANACCCATTGTNTGCCNCTGTGGTTGGAGATGCACAAACATCATACTACAC]


>consensus_9297#3 CGAGACNNGCCAAGTATCCGAAGTCTGTNTTTACCCCCTCTGTTAGNGTTACAACNTCAT TTGTGGCTGAAGAAGACGCCNNCATCNGTAAATGTNTAGAACAAAACNGNAGCCAAGATC TGGANAAAGCTTCTCCTGTGGATTCAGAAACAACAATCTGCCTGTNTCTGGTCCTGANCA GGTNGAATGTGTCAATTCATGTTTTCCCACCGAGTGTNCAAATCCCTCCGATCTAGGGTG CCAGANAAACTACATACCTTCTGTGACATCACAATAATAGTTGGCTCATATCTTGGGCTA CTTCAGGCTGTCTTCCCGGTCTTTTCAGCACAATTTGTATGGAATATCATGGGTGTCTNG AATGATTCCCCANTGCTAAGGGCTGCANTTCGCTCCTANCAATCAAATCACTTGGTGCTC CCGGCGTATTACTGTCTCTGGGCATGCAAGGTGTTTTCCGTGGTTTCCAANACACCAANA CCCATTGTNTGCCNCTGTGGTTGGAGATGCACAAACATCATACTACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9297#0      CAGAAGCGGCAGCGTACTCGTCGATCGGTGCAGGTCCGTGCAAGTGCAAGAGAGTGCAGT 60
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GCGGTACAGCGCGCGTGTGGTTGCTGAGCACTTGTGCTGCGCGGGCTACCTACCTGTTTC 120
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GAGCCAGGTTTGGTTCAGCTAGCGTATTATAGTACAGAGACTCCACTTCGATCCACAAAA 180
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      TTAAGGCCAGACTTAGCAAGCTGCTGACGTCGTGATAAGCGGAGCGAGCGCCTCGCTGCC 240
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      TCTGAGAGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGTGAGCACCG 300
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CGAGCACGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCAC 360
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CGGCATGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCAGCTGCTGCTGCTGTTGCAGC 420
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GAGCAGTACGGCCGAGAAGCGTGCGGCCGCCGTCGTCGTCCCCGACGCGGCGCTGACGAT 480
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GAACGGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCGCCGGAGGATCT 540
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GCCGGCGCCAGCCGCATTGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCAT 600
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GAACATCAGGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGT 660
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GCCGGCGTCGCTGGCTCTGGCGGCGGATCCGCTTGCTTCCTTGGTAGACACAGCGTTCAT 720
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CGGCCGCTTAGGTTCGGTGGAGATAGCTGCTGTTGGTGTTTCAATTGCCATATTTAACCA 780
consensus_9297#3      ------------------------------------------------CGAGACNNGCCA 12
consensus_9297#1      -------------GCTTAAGCTTACGCTGCGACGCGTCCCCCCTGTGCCGCTGCCGCCGC 47
consensus_9297#2      ---------------------ATGAAGTTGGGGCTGAATTTTCACAAAGGACATCGACGT 39
                                                                               *  

consensus_9297#0      AGTATCCAAAGTCTGTATTTACC-CCCT-TGTTAGCGTTA-CAACATCATTTGTGGCTGA 837
consensus_9297#3      AGTATCCGAAGTCTGTNTTTACC-CCCTCTGTTAGNGTTA-CAACNTCATTTGTGGCTGA 70
consensus_9297#1      CGCCGCCGTGCTTTCTGTTTTCCGCCCGTTGCTTGCATCC-TCACG-CGCGTGCGAGAGG 105
consensus_9297#2      GATCGATGTCATTCACAAAGGCATTCCTGTAAGAATATCTGTCAAGATGTTCA-GAGGGT 98
                                 *         *   **  *       *     *          *   * 

consensus_9297#0      AGAAG-ACGCT-ATCATCAGTAAATGTATAGAAGAA--AACAGCAGCCAAGAT-CTGGAG 892
consensus_9297#3      AGAAG-ACGCC-NNCATCNGTAAATGTNTAGAACAA--AACNGNAGCCAAGAT-CTGGAN 125
consensus_9297#1      GGGGGCGTACG-GATTTCGTTGGTTGTAACCGACTGGCACCGGTAGACACGTTACCGCCG 164
consensus_9297#2      AGCAACATGTTTAACTATTTTCCAAGATTCAGACATTGACTGATAGCTTTGTTTTGGGGT 158
                       *                  *    *      *     *     **    * *   *   

consensus_9297#0      AAAGCTTCT---------CCTGTGGAT-TCAGAAACCAACAATCTGCCTGTATCTGGTCC 942
consensus_9297#3      AAAGCTTCT---------CCTGTGGAT-TCAGAAAC-AACAATCTGCCTGTNTCTGGTCC 174
consensus_9297#1      GTGGCCTCTGGCACACCTCTCGCCGACGTCGTCGTCTGCTGATCGTCCTCTGCCGAGT-- 222
consensus_9297#2      TCAGTTTGTCGC---TGGCACACAGACGATAAATTC-ACTAGCCTTC--GTGTTCGATGG 212
                         *  * *         *     **         *       *  *   *      *  

consensus_9297#0      TGATAAGGTAGAATGTGTCAAT-TCATG-TATTCCCACCGAGTGTACAAATCCCTCCGAT 1000
consensus_9297#3      TGANCAGGTNGAATGTGTCAAT-TCATG-TTTTCCCACCGAGTGTNCAAATCCCTCCGAT 232
consensus_9297#1      TGCCCCTGTCGCAGCTGCTGACGTCATGATAAGCGGAGCGAGCGCCTCGCTGCCTCTGAG 282
consensus_9297#2      CATCAACTTCGGAGCATCAGACTACACA---TACTCAGCTTACTCCATGGTTGGTGTGGC 269
                              * * *       *   **       *  * *           *   *  *  

consensus_9297#0      CAAGGGTGCAAGAGAAAG---TACAT---ACCTTCTG------TGACATCAGCAGTAATA 1048
consensus_9297#3      CTAGGGTGCCAGANAAAC---TACAT---ACCTTCTG------TGACATCA-CAATAATA 279
consensus_9297#1      AGAGGCCGGTATAAGTACGGGCGCGTCTGGCTCTCTGCTTGGCTGGGAGCACCGCGAGCA 342
consensus_9297#2      TGCTATCTCCATACCCTGCCTAGTAT--ACCTTTCTGCTCA--TAACGGATTCATCGGTA 325
                                * *            *    *  ****      *        *      *

consensus_9297#0      -GTTGGCTCATTTCTTGGGCTACTTCAGGCTGT-----CTTCCTGGTCT--TTTCAGCA- 1099
consensus_9297#3      -GTTGGCTCATATCTTGGGCTACTTCAGGCTGT-----CTTCCCGGTCT--TTTCAGCA- 330
consensus_9297#1      CGTACAGCTCCGCCTCAGACAAGAGCAGAACACGTACGTTTCCCCGCCCGGCACCGGCA- 401
consensus_9297#2      TATGGATCGCATTAACGATCTACATGAGCCTGA-----------GGACCATAGCTAGCAC 374
                        *                * *    **                 * *        *** 

consensus_9297#0      AAATTTGTATT--GAATATCATGGGTGTC-AAGAATGATTCACCAAT-GCTAAGGCCTGC 1155
consensus_9297#3      CAATTTGTATG--GAATATCATGGGTGTC-TNGAATGATTCCCCANT-GCTAAGGGCTGC 386
consensus_9297#1      TGGCTGGTCTGAAGAAGATGGAGGAGGTCACAGCATCTGCTGCTGCT-GTTGCAGCGAGC 460
consensus_9297#2      TTGGAGGTATAT-CAGTATAGGATATACTACAGCCTTATCCGCTCTTCATTGCAGCCATT 433
                            ** *    *  **             *  *      *   *   *   *     

consensus_9297#0      AGTTCGCTACCTAACAATCAGATCACT--TGGTGCTCCCGCCGTATTACTGTCTCTGGCC 1213
consensus_9297#3      ANTTCGCT-CCTANCAATCAAATCACT--TGGTGCTCCCGGCGTATTACTGTCTCTGGGC 443
consensus_9297#1      AGTACGGCCGACAAGCGTGCGGCCGCCGGCGTCGTCCCCGACGCGGCGCTGACGATGAAC 520
consensus_9297#2      TCTTCAGTAGCTCTTAGCTCT-TAGCCTTTAGGATTCATCATATACTAG-GTTGCTAATT 491
                        * *                    *          *             *    *    

consensus_9297#0      A-TGC-------------AGGGTGTTTTCCGTGGTTTCAAAGACACAAAGA----CACCA 1255
consensus_9297#3      A-TGC-------------AAGGTGTTTTCCGTGGTTTCCAANACACCAANA----C-CCA 484
consensus_9297#1      GGTGCCGCCGGCGCGGAGGAGAAGACGGCGGCGGCTGCGGCGGCACCGGAGGATCTGCCG 580
consensus_9297#2      ACTTCTGCT----CTATCTGCAGAATGGGGGCAGCAAGGGGGCCATGGGTG----TTCCT 543
                        * *                         *  *         **            ** 

consensus_9297#0      TTGTATGCCACTG-TGGTTGGAGATGCAGCAAACATCATACTAGACCCAATTTTGATGTT 1314
consensus_9297#3      TTGTNTGCCNCTG-TGGTTGGAGATGCA-CAAACATCATACTACAC-------------- 528
consensus_9297#1      GCGCCAGCCGCAT-TGTCCGGCTGGCCGAGGAGGGTGGGGCTCTACCTCTTCGTCATGAA 639
consensus_9297#2      CCGGAAGTGATGGGTTTTCAACTTCTCATGGCGATTATTATTAATCCTCAGCGTTTTGCT 603
                        *   *       *           *        *     *   *              

consensus_9297#0      TGTTTGTCACATGGGTGTCACTGGCGCAGCAGTTGCCCATGTCATTTCTCAGTACCTGAT 1374
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      CATCATGAGCGTGTTCAAGCTTGACGAGCTCGGATCAGAGGTGTTGCGCATTGCCGAGCC 699
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      AACGATGATACTGCTGTGTCGGCTCATCCGGCAAGTTGATGTTATCCCACCTAGCCTTAA 1434
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      GGCGTCA----------------------------------------------------- 706
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      ATCCCTCAAATTTGGGCGGTTTCTTGGATGCGGGTTCCTGCTGCTTGCAAGGGTTGTGGC 1494
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      AGTGACTTTCTGCGTCACGCTGGCGTCGTCGTTAGCCGCTCGCCATGGACCTACCATCAT 1554
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GGCGGCCTTCCAGATCTGCTGCCAGCTCTGGCTCGCCACATCTCTTCTTGCTGATGGACT 1614
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      TGCCGTCGCTGGGCAGGCAGTTCTTGCAAGCGCATTCGCCAAGAATGATAAAGGCAAGGT 1674
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      TGTTGTTGCGACATCTCGTGTACTACAGCTGAGCATTGTTCTTGGCATGGGTCTCACTGT 1734
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      TGTGCTTGGGGTTGGCATGAAGTTTGGGGCTGGAATTTTCACAAAGGACATCGACGTGAT 1794
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CGATGTCATTCACAAAGGCATTCCTTTTGTCGCTGGCACACAGACGATAAATTCACTAGC 1854
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CTTCGTGTTCGATGGCATCAACTTCGGAGCATCAGACTACACATACTCAGCTTACTCCAT 1914
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GGTTGGTGTGGCTGCTATCTCCATACCCTGCCTAGTATACCTTTCTGCTCATAACGGATT 1974
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTG 2034
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      GAGAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTTCAACTT 2094
consensus_9297#3      ------------------------------------------------------------
consensus_9297#1      ------------------------------------------------------------
consensus_9297#2      ------------------------------------------------------------
                                                                                  

consensus_9297#0      CTCATGGCGATTATTATTAATCCTCAGCGTTTTGCT 2130
consensus_9297#3      ------------------------------------
consensus_9297#1      ------------------------------------
consensus_9297#2      ------------------------------------
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)