These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAGACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTACGGGTACAGCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAATACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCAAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTTGGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG] [+] EMBL AK107869 [CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAGACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCTCTTCGCCATCCTGTACGGGTACAGCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAATACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCAAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTTGGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG] consensusID : consensus_930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACAGCATCTCAAGGTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAATACGGACCGGATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTCTCAGTCAAAAAAAAAA] [+] EMBL BI811696 [TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACAGCATCTCAAGGTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAATTTGAACAGGATAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAATACGGACCGGATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCTGTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACAGAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTCTCAGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_930#0 CTCCTCTTCACCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGGGAG 60 consensus_930#1 ------------------------------------------------------------ consensus_930#0 ACTAAACCGATCGCAGCCTTCGTAAGAGACTATTTTGGTTTCCACCGCGAGCTGCTACCA 120 consensus_930#1 ------------------------------------------------------------ consensus_930#0 CTTTCTGCCATAATATT-GGCAGCATACCCTG-TCCTCTTCGCCATCCTGTACGGGTACA 178 consensus_930#1 ----------TAATATTTGGCAGCATACCCTGGTCCTCTGTGCCATCCTGTACGGGTACA 50 ******* ************** ****** ******************* consensus_930#0 GCATCTCAAGGTTTAACTTCCAAAAGAGATAGACAGATCAGGGG-TGTAAATAGGAAAAT 237 consensus_930#1 GCATCTCAAGGTTTTAACGTTCCAAGAGATAGACAGATCAGGGGGTGTAAATAGGAAAAT 110 ************** * ********************* *************** consensus_930#0 TTGAACAGGATAATAACTGAACCACATGTCCATTACCATATAAGTTGAGCCGGATTCGAA 297 consensus_930#1 TTGAACAGGATAATAACTGAACCACATATCCCTTACCATATAAGTTGAGCCGGATTCGAA 170 *************************** *** **************************** consensus_930#0 TACGAACCGGATATCTGTTGAATGTGGATATGGATACAGATTCAGATTAGATATTGGTCT 357 consensus_930#1 TACGGACCGGATATCTGTTGAATGTGGATACGGATACAGATTCAGATTAGATATTGGTCT 230 **** ************************* ***************************** consensus_930#0 GTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACAAAAATTTAATAGTCCA-A 416 consensus_930#1 GTTTCAATCAGATTCGGTTATCCACTAATTGCAATGATGACCAAAATTTAATAGTCCACA 290 ***************************************** **************** * consensus_930#0 GAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTTGTTT 476 consensus_930#1 GAGACTTATATACTATTGTATTAAATTTAAGTGAGAAGAAATGTAATGGCAGTCTT-CTC 349 ******************************************************** * consensus_930#0 GGTTACAGCAATATGAAGGCTGAACTTCCAAAAGTAAAAACACACTATCATGGCAAAG 534 consensus_930#1 AGTCAAAAAAAAAA-------------------------------------------- 363 ** * * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||