cluster # 9300

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Oryza sativa
cluster # 9300 cluster # 9300 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9300#0 length = 873 sequences # 4

consensus_9300#1 length = 668 sequences # 1
consensus_9300#2 length = 177 sequences # 1

consensusID : consensus_9300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 873
fasta sequence

                              [CTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACG-NTGGTGCCGGCGCGGCGGCGCGGC-GGATTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGATTGATGAGGTGGATAGTTAGAATGCTCAATTA]

[+] EMBL AU064450             [CTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACG NTGGTGCCGGCGCGGCGGCGCGGCGGGATTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCCTCCTCCAGCTCGGCGGA CGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK065103             [                                                                                                                     ATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGC GGATTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGATTGATGAGGTGGATAGTTAGA           ]
[-] EMBL CB659762             [                                                                                                                                                                                                                                                                                                                    CCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGGTTGATGAGGTGGATAGTTAGAATGCTCAATTA]
[+] EMBL AU164303             [                                                                                                                                                                                                                                                                                                                                                                                                    TTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCntnc                                                                                                                                                                                                                                                                          ]




>consensus_9300#0
CTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGA
CACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATC
GGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGNTGGTGCC
GGCGCGGCGGCGCGGCGGATTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGT
CGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCT
CCTCCTCCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGC
TCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGC
TGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGT
CGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGC
ATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGA
TGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGG
CAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAG
CAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGT
GGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACG
ATTGATGAGGTGGATAGTTAGAATGCTCAATTA

consensusID : consensus_9300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGCTCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGTGCCGTTTGCTCTAGCTGGTCGCGTTCTTCTTGATCTTTGATGATCCTTGAGCTAGCTGAGCTGACACCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCATCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAAGGACCTGGCGAAGCGCCCGAAGGAAGCGCCTCAAGCCGGTCGCAGAGCTTGCGGGGGGAAGCCTGGANGCGC]

[+] EMBL AU056948             [CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGCTCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGTGCCGTTTGCTCTAGCTGGTCGCGTTCTTCTTGATCTTTGATGATCCTTGAGCTAGCTGAGCTGACACCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCATCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAAGGACCTGGCGAAGCGCCCGAAGGAAGCGCCTCAAGCCGGTCGCAGAGCTTGCGGGGGGAAGCCTGGANGCGC]




>consensus_9300#1
CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTAT
AATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTT
GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTC
AAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGA
TTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCG
GTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGC
TCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGT
GCCGTTTGCTCTAGCTGGTCGCGTTCTTCTTGATCTTTGATGATCCTTGAGCTAGCTGAG
CTGACACCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAGGGGGTTGTCGAGG
TTCTTCGACGGAAAGTCGCATCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAAGGAC
CTGGCGAAGCGCCCGAAGGAAGCGCCTCAAGCCGGTCGCAGAGCTTGCGGGGGGAAGCCT
GGANGCGC

consensusID : consensus_9300#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [TTGTTGATGGGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTCGGGGATACTCTAGACTTGGGGATATATACATGGACCGTAATCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG]

[+] EMBL AA752353             [TTGTTGATGGGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTCGGGGATACTCTAGACTTGGGGATATATACATGGACCGTAATCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG]




>consensus_9300#2
TTGTTGATGGGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTC
GGGGATACTCTAGACTTGGGGATATATACATGGACCGTAATCGTGGTGCCGGCGCGGCGG
CGCGGCGGATTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9300#1      CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTAT 60
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      ----------------------------------------CTCCTCCTCCACACCTTTAT 20
                                                                                  

consensus_9300#1      AATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTT 120
consensus_9300#2      --------------------------------------------------TTGTTGATGG 10
consensus_9300#0      AATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTT 80
                                                                        ****** *  

consensus_9300#1      GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTC 180
consensus_9300#2      GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTCGGGGATACTC 70
consensus_9300#0      GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTC 140
                      ************************************ ***** ** ********* * **

consensus_9300#1      AAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGA 240
consensus_9300#2      TAGACTTGGGGATATATACATGGAC-CGTAATCGTGGTGCCGGCGCGGCGGCGCGGCGGA 129
consensus_9300#0      AAGAGTTGGGGATATATACATGGACGCGTACGN-TGGTGCCGGCGCGGCGGCGCGGCGGA 199
                       *** ******************** ****    **************************

consensus_9300#1      TTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCG 300
consensus_9300#2      TTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG------------ 177
consensus_9300#0      TTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCG 259
                      **** * ****************** **** ******** ** *****            

consensus_9300#1      GTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGC 360
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      GTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCC--TCCTCCAGC 317
                                                                                  

consensus_9300#1      TCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGT 420
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      TCGGCGGAGCGCCGCTT-CGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGG 376
                                                                                  

consensus_9300#1      GCCGTT----TGCTCTAGCTG---GTCGCGTTCTTCTTGATCTTTGATGATCCTTGA--- 470
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      GTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTC 436
                                                                                  

consensus_9300#1      GCTAGCTGAGCTGACA---CCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAG 527
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      GCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGG 496
                                                                                  

consensus_9300#1      GGGGTTGTCGAGGTTCTTCGA---CGGAAAGTCGCATCGTTCGCGTCGCT----GGCGGC 580
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      AGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGT 556
                                                                                  

consensus_9300#1      GGTCGCCT-CGCTGGAAGG---ACCTGGCGAAGCGCCCGAAGGAAGC-----GCCTCA-- 629
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      CGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCC 616
                                                                                  

consensus_9300#1      -AGCCGGTCGCAGA-GCTTGCGGGGGGAAGCCTGGANGCGC------------------- 668
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      GAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGT 676
                                                                                  

consensus_9300#1      ------------------------------------------------------------
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      CGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGT 736
                                                                                  

consensus_9300#1      ------------------------------------------------------------
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      CTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGT 796
                                                                                  

consensus_9300#1      ------------------------------------------------------------
consensus_9300#2      ------------------------------------------------------------
consensus_9300#0      CCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGATTGATGAGGTGGATA 856
                                                                                  

consensus_9300#1      -----------------
consensus_9300#2      -----------------
consensus_9300#0      GTTAGAATGCTCAATTA 873