These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 873 fasta sequence [CTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACG-NTGGTGCCGGCGCGGCGGCGCGGC-GGATTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGATTGATGAGGTGGATAGTTAGAATGCTCAATTA] [+] EMBL AU064450 [CTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACG NTGGTGCCGGCGCGGCGGCGCGGCGGGATTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCCTCCTCCAGCTCGGCGGA CGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAG ] [+] EMBL AK065103 [ ATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGC GGATTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGATTGATGAGGTGGATAGTTAGA ] [-] EMBL CB659762 [ CCTCCTCCAGCTCGGCGGAGCGCCGCTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCCGAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGTCGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGTCTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGTCCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGGTTGATGAGGTGGATAGTTAGAATGCTCAATTA] [+] EMBL AU164303 [ TTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGGAGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGTCGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCntnc ] consensusID : consensus_9300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGCTCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGTGCCGTTTGCTCTAGCTGGTCGCGTTCTTCTTGATCTTTGATGATCCTTGAGCTAGCTGAGCTGACACCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCATCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAAGGACCTGGCGAAGCGCCCGAAGGAAGCGCCTCAAGCCGGTCGCAGAGCTTGCGGGGGGAAGCCTGGANGCGC] [+] EMBL AU056948 [CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTATAATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTTGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTCAAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCGGTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGCTCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGTGCCGTTTGCTCTAGCTGGTCGCGTTCTTCTTGATCTTTGATGATCCTTGAGCTAGCTGAGCTGACACCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAGGGGGTTGTCGAGGTTCTTCGACGGAAAGTCGCATCGTTCGCGTCGCTGGCGGCGGTCGCCTCGCTGGAAGGACCTGGCGAAGCGCCCGAAGGAAGCGCCTCAAGCCGGTCGCAGAGCTTGCGGGGGGAAGCCTGGANGCGC] consensusID : consensus_9300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [TTGTTGATGGGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTCGGGGATACTCTAGACTTGGGGATATATACATGGACCGTAATCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG] [+] EMBL AA752353 [TTGTTGATGGGATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTCGGGGATACTCTAGACTTGGGGATATATACATGGACCGTAATCGTGGTGCCGGCGCGGCGGCGCGGCGGATTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9300#1 CAGCAGTGACTCACCTCGCCACCACGGCCACGGTCTCCTCCTCCTCCTCCACACCTTTAT 60 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 ----------------------------------------CTCCTCCTCCACACCTTTAT 20 consensus_9300#1 AATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTT 120 consensus_9300#2 --------------------------------------------------TTGTTGATGG 10 consensus_9300#0 AATTTGTACCAGCTGCCTTCTTTCCACCAGTCGACGACGACACGGCTCGGTTGTTGCTTT 80 ****** * consensus_9300#1 GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTC 180 consensus_9300#2 GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAAATCGGAGTCGGTCGGGGATACTC 70 consensus_9300#0 GATCGATCTGAGCTGCGTTCGCTTGCCTTGATCTGAGATCGGCGTTGGTCGGGGAGAGTC 140 ************************************ ***** ** ********* * ** consensus_9300#1 AAGAGTTGGGGATATATACATGGACGCGTACGCGTGGTGCCGGCGCGGCGGCGCGGCGGA 240 consensus_9300#2 TAGACTTGGGGATATATACATGGAC-CGTAATCGTGGTGCCGGCGCGGCGGCGCGGCGGA 129 consensus_9300#0 AAGAGTTGGGGATATATACATGGACGCGTACGN-TGGTGCCGGCGCGGCGGCGCGGCGGA 199 *** ******************** **** ************************** consensus_9300#1 TTGCGAGGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCG 300 consensus_9300#2 TTGCTACGAGCAGGAGGAGGATATCCGGTCACCGTCCACATCAGCGGG------------ 177 consensus_9300#0 TTGCGANGAGCAGGAGGAGGATATCGGGTCGCCGTCCACGTCGGCGGGGAGCTCGGCGCG 259 **** * ****************** **** ******** ** ***** consensus_9300#1 GTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTTCCTCCTTCCAGC 360 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 GTCGTCGGGGTCGTCCTCGGAGCTCGCCGACGACGCGAGCTCCTCCTCC--TCCTCCAGC 317 consensus_9300#1 TCGGCGGAGCGCCGCTTTCGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGTGCGT 420 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 TCGGCGGAGCGCCGCTT-CGAGATGTCCGACCTCATGACGCAGCTCCCGTTCAAGAGGGG 376 consensus_9300#1 GCCGTT----TGCTCTAGCTG---GTCGCGTTCTTCTTGATCTTTGATGATCCTTGA--- 470 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 GTTGTCGAGGTTCTTCGACGGAAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTCGCCTC 436 consensus_9300#1 GCTAGCTGAGCTGACA---CCGGAGTGTTTTNTTTTTTTCATTTTTTTCGTTTGCAGGAG 527 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 GCTGGAGGACCTGGCGAAGCCGCCGAGGAAGCGCCTCAAGCCGTCGCAGAGCTGCGGGGG 496 consensus_9300#1 GGGGTTGTCGAGGTTCTTCGA---CGGAAAGTCGCATCGTTCGCGTCGCT----GGCGGC 580 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 AGGCCTGGACGCGCACCGCGGGCGCGTCCTGTCGCCGCGCCGGCATTGCCCCAAGGCCGT 556 consensus_9300#1 GGTCGCCT-CGCTGGAAGG---ACCTGGCGAAGCGCCCGAAGGAAGC-----GCCTCA-- 629 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 CGTCGCCGGCGCCAAGAAGGCGACCGCGAGGGCCGCCCTCTCGATGCTCGCCGCCTCGCC 616 consensus_9300#1 -AGCCGGTCGCAGA-GCTTGCGGGGGGAAGCCTGGANGCGC------------------- 668 consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 GAGGCGGCCGCCGCTGGCCGCGCCGGCGAGGCCGGAGGGGGTGGCAGCTAAGTTTCTCGT 676 consensus_9300#1 ------------------------------------------------------------ consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 CGTTAACTAGGTAGTAGAAAGTTTGGTGATAGTTGCAGTCGAAGCAACGTGTTTACCCGT 736 consensus_9300#1 ------------------------------------------------------------ consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 CTGTACATAAGTACTCTGAATGACCGGCATTTTCGCTGTTTGGTGGTCCATTTCCACTGT 796 consensus_9300#1 ------------------------------------------------------------ consensus_9300#2 ------------------------------------------------------------ consensus_9300#0 CCGTGGTAATTTGTTGGGTGAGCTTGTTGTAACATAAATCCACGATTGATGAGGTGGATA 856 consensus_9300#1 ----------------- consensus_9300#2 ----------------- consensus_9300#0 GTTAGAATGCTCAATTA 873 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||