These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1760 fasta sequence [CGACCTCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGGTGAGCTCGACCACGCCCCCATTAGTATCGATTGCTGCTTAGGGGGTCGCTTTTGTTGTGACAATACACAATGTTTAATTGTGCAGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTACTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGAGATGAAATAGAACATCTTCTGGATGATAATGAAGACATGGCACATCTGTATCTAACAAGGAAGCAATTACAAAACCAGCAAGTTGAGGCTTTAATATCATCGGCTGCTTCCAATAGCATTGTTCCTGGAGGAACAAGTCTGTCCAGGTTGAACAATAGTTTTCGGCGCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGTTGCTTGAGGCTTACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTGTCGGTTCGAGAGTATATTGATGATACAGAAGACTATGTCAATATTCAACTTGACAACCA-GCGTAATGAAC-TTATTCAG-CTTCAGCT--TACACTGACTATTGCATCCTTCGGCATAGCTGTCAACACCT-TCATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTAC-AGCATTGATGATGGTAGCTTCTTTTGGCCATTTGTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACAATGT-AACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTCGTAACGTCTG-CAGAAAGGAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACTCTAATGCATTTATGTTTCACTGGTAAATAAGATACA-TTTCTGTAGTTTCCCCTTGGTAAAAATGTAGTATACTAACATGTTATGATCATCAGCACCCTTG] [+] EMBL AK069472 [CGACCTCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGGTGAGCTCGACCACGCCCCCATTAGTATCGATTGCTGCTTAGGGGGTCGCTTTTGTTGTGACAATACACAATGTTTAATTGTGCAGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTACTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGAGATGAAATAGAACATCTTCTGGATGATAATGAAGACATGGCACATCTGTATCTAACAAGGAAGCAATTACAAAACCAGCAAGTTGAGGCTTTAATATCATCGGCTGCTTCCAATAGCATTGTTCCTGGAGGAACAAGTCTGTCCAGGTTGAACAATAGTTTTCGGCGCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGTTGCTTGAGGCTTACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTGTCGGTTCGAGAGTATATTGATGATACAGAAGACTATGTCAATATTCAACTTGACAACCA GCGTAATGAAC TTATTCAG CTTCAGCT TACACTGACTATTGCATCCTTCGGCATAGCTGTCAACACCT TCATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTAC AGCATTGATGATGGTAGCTTCTTTTGGCCATTTGTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACAATGT AACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTTGTAACGTCTG CAGAAAGGAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACTCTAATGCATTTATGTTTCACTGGTAAATAAGATAC ] [+] EMBL BI810973 [ acCTATGTCAATAGTCAACTTGACAACCACGCGTAAGGAACGTTATTCAGCCTTCAGCTTGTACACTGACTATGGCATCCTTCGGCATACCTGTCAACACCTGTCATA CT GGGCTTTTGCGATGAACATCCAGAGCAAATTGTACAAGCCTTGATGATGGTAGCTTCTGTTTGCCATTTTTTGGGGGCACCTCATC GGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACCATGTCAACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTCGTAACGTCTG CAGAAAGGACCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACT ] [-] EMBL AA752379 [ gtaAAAGGGCATGCA TTTGACTCGTAACGTCTGSKAGAAAGGAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACWCTAATGCATTTATGTTTCACTGGTAAATAAGATACA TTTCTGTAGTTTC ] [+] EMBL CB096689 [ GAATCCTAGGATTAGGGAGAAACTCTAATGCATTTATGTTTCACTGGTAAATAAGATACATTTTCTGTAGTTTTCCCTTGGTAAAAATGTAGTATACTAACATGTTATGATCATCAGCACCCTTG] consensusID : consensus_9301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence [TCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTNCTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGANATGAAATANAACATCTTCTGGGATGATAATGAAAAACATGGGCACATCTGTNTCTAACCAGGGANACNATTACCAAACCCCGCNAGTTTGANGCTTTNATATCNTCCGGCTGCTTCCAATNGCNTTGTTCCTGGANGAACAAATCTGTCCAGGTTGAACAATAGTTTTCGGCGCANCGTGAGCNTCCCTNCNAGCCTGCCTTTGGATNATGACNTGGAAAACCTANAAATGTTGCTTGAAGGCTNCCTCCCGCCANTGGGNTGGATTCCNNCCCAAATTTTGGTCGGTCCAA] [+] EMBL CB646937 [TCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAGGAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTCGGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTCGCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGTATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCGGCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACGCGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAGCATCCTCGCTAGAGAGAAGGCGATGGTGATCAACCTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACGATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTGTGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGAGATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCT ] [+] EMBL BE229740 [ GGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTCCAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGTCTTGAAAGGCGCGCCACTCCGGTNCTTGAGGAACTGACCAAGAATGTCAGCACAAGGAATCTCGATCGTGTTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAAGGTCAGANATGAAATANAACATCTTCTGGGATGATAATGAAAAACATGGGCACATCTGTNTCTAACCAGGGANACNATTACCAAACCCCGCNAGTTTGANGCTTTNATATCNTCCGGCTGCTTCCAATNGCNTTGTTCCTGGANGAACAAATCTGTCCAGGTTGAACAATAGTTTTCGGCGCANCGTGAGCNTCCCTNCNAGCCTGCCTTTGGATNATGACNTGGAAAACCTANAAATGTTGCTTGAAGGCTNCCTCCCGCCANTGGGNTGGATTCCNNCCCAAATTTTGGTCGGTCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9301#0 CGACCTCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAG 60 consensus_9301#1 -----TCGCCGTCGCCGTCGCCGCCGCCGCCGCCGCCATGGGGAGGCGATCCGGGGGGAG 55 ******************************************************* consensus_9301#0 GAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTC 120 consensus_9301#1 GAAGCTGCCCTTCTTCGCCTCGAACGCCTCCACGTCGTCCTCCACCAAGCGGACCCGCTC 115 ************************************************************ consensus_9301#0 GGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTC 180 consensus_9301#1 GGCGCGCCGCCTCCCCTCGCTCACCAGGCCGCGCGCGTCGAGCTCCCCATCCCCGGCGTC 175 ************************************************************ consensus_9301#0 GCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGT 240 consensus_9301#1 GCCGTCCCCGCCGCCGCCGTCCGCGTCGCACCCCGCCCCTCCGTCCCCTCCCCTCGCCGT 235 ************************************************************ consensus_9301#0 ATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCG 300 consensus_9301#1 ATCTCCCGCCGGCGCCGGTAAGGTCGGGAAGAAGAAGGCCGGGGCGCGCCTCTGGATGCG 295 ************************************************************ consensus_9301#0 GCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACG 360 consensus_9301#1 GCTCGACCGGTGGGGCGTCTCCGAAACCCTCCATCTCGACAAGGGCTCCATCATCCGACG 355 ************************************************************ consensus_9301#0 CGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAG 420 consensus_9301#1 CGCCGGCCTGCCGCCGCGGGACCTCCGGATCCTCGGCCCCGTCTTCTCCGACTCCTCCAG 415 ************************************************************ consensus_9301#0 CATCCTCGGTGAGCTCGACCACGCCCCCATTAGTATCGATTGCTGCTTAGGGGGTCGCTT 480 consensus_9301#1 CATCCTCG---------------------------------------------------- 423 ******** consensus_9301#0 TTGTTGTGACAATACACAATGTTTAATTGTGCAGCTAGAGAGAAGGCGATGGTGATCAAC 540 consensus_9301#1 ----------------------------------CTAGAGAGAAGGCGATGGTGATCAAC 449 ************************** consensus_9301#0 CTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACG 600 consensus_9301#1 CTAGAATTCATCAGGGCGATCGTTACGGCCGATGAGATCCTTCTACTGGATCCTCTCACG 509 ************************************************************ consensus_9301#0 ATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTG 660 consensus_9301#1 ATCGATGTGATCCCTTTTGTTGAGCAATTGACACATCATCTCCCTCTCAAGAACCTGGTG 569 ************************************************************ consensus_9301#0 TGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGA 720 consensus_9301#1 TGTGGGAATGGTCAACCTGGTGGTGATGACCATGGGGAAAAGCATGATGACTCGCATGGA 629 ************************************************************ consensus_9301#0 GATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTC 780 consensus_9301#1 GATCAGGTGCCCCGCCTTAACGAGGCCACCGGAGCAGAGCACGAGTTGCCATTTGAATTC 689 ************************************************************ consensus_9301#0 CAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGT 840 consensus_9301#1 CAGGTGCTGGAGCTCGCACTCGAGACCGTGTGCTCATCATTCGACGTTAACGTGTCTGGT 749 ************************************************************ consensus_9301#0 CTTGAAAGGCGCGCCACTCCGGTACTTGAGGAACTGACCAAGAATGTCAGCACAAGGAAT 900 consensus_9301#1 CTTGAAAGGCGCGCCACTCCGGTNCTTGAGGAACTGACCAAGAATGTCAGCACAAGGAAT 809 *********************** ************************************ consensus_9301#0 CTCGATCGTGT-GCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAA 959 consensus_9301#1 CTCGATCGTGTTGCGAACTCTCAAGAGTGATCTTACCCGTTTGCTTGCCCATGTGCAGAA 869 *********** ************************************************ consensus_9301#0 GGTCAGAGATGAAATAGAACATCTTCTGG-ATGATAATGAAGA-CATGG-CACATCTGTA 1016 consensus_9301#1 GGTCAGANATGAAATANAACATCTTCTGGGATGATAATGAAAAACATGGGCACATCTGTN 929 ******* ******** ************ *********** * ***** ********* consensus_9301#0 TCTAAC-AAGGAAGCAATTACAAAACCA-GCAAGTT-GAGGCTTTAATATCATC-GGCTG 1072 consensus_9301#1 TCTAACCAGGGANACNATTACCAAACCCCGCNAGTTTGANGCTTTNATATCNTCCGGCTG 989 ****** * *** * ***** ***** ** **** ** ***** ***** ** ***** consensus_9301#0 CTTCCAATAGCATTGTTCCTGGAGGAACAAGTCTGTCCAGGTTGAACAATAGTTTTCGGC 1132 consensus_9301#1 CTTCCAATNGCNTTGTTCCTGGANGAACAAATCTGTCCAGGTTGAACAATAGTTTTCGGC 1049 ******** ** *********** ****** ***************************** consensus_9301#0 GCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGT 1192 consensus_9301#1 GCANCGTGAGCNTCCCTNCNAGCCTGCCTTTGGATNATGACNTGGAAAACCTANAAATGT 1109 *** ******* ** ** * *** *** ******* ***** ***** ***** ****** consensus_9301#0 TGCTTGAGGCTTACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTG-TCGGTTCGA 1251 consensus_9301#1 TGCTTGAAGGCTNCCTCCCGCCANTGGGNTGGATTCCNNCCCAAATTTTGGTCGGTCCAA 1169 ******* * * * ** ** * *** * **** * ******* ***** * * consensus_9301#0 GAGTATATTGATGATACAGAAGACTATGTCAATATTCAACTTGACAACCAGCGTAATGAA 1311 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CTTATTCAGCTTCAGCTTACACTGACTATTGCATCCTTCGGCATAGCTGTCAACACCTTC 1371 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 ATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTACAGCATTGATGATGGTAGC 1431 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 TTCTTTTGGCCATTTGTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTA 1491 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 TTATGGTATGCCCGGTGGAAGAAGTTGCTCGGTCCTTGAACACAATGTAACAAGTCACGA 1551 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTTTGACTCGTAACGTCTGCAGAAAG 1611 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 GAGCAGTCATTTGAAACATAAAAGAGAATCCTAGGATTAGGGAGAAACTCTAATGCATTT 1671 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 ATGTTTCACTGGTAAATAAGATACATTTCTGTAGTTTCCCCTTGGTAAAAATGTAGTATA 1731 consensus_9301#1 ------------------------------------------------------------ consensus_9301#0 CTAACATGTTATGATCATCAGCACCCTTG 1760 consensus_9301#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||