These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 979 fasta sequence [CTATCCACCCACACCAGCAAGCCGCTCAGGCGCGCTCTCCGCTCCACCGCCATGGCGTCCATCACCCTCCTCTCCCTCGCTCCCGCGGCCACATTGCTCCACCTCCCGGCCTCCACTTCGCTCTCCACCTCCTTCGTCGCCGCTCCAGGCCCCATCTCCGGCCGCCGGTCCGTCGTCCTCCGCGCCCGCCCGCGCCGCTGCGTCACGGTCGTGTGCAGCGCCGCGGCGGCCGAGGCCGCGGAGGCGGAGCCCGCGGAGAAGTTCCGGCTCGACAACCTGGGCCCGCAGAAGGGGTCGCGGCGGCGGCCGAAGCGGAAGGGGCGCGGTATCGCGGCGGGGCAGGGCGCGAGCTGCGGGTTCGGCATGCGTGGACAGAAGTCGCGCTCGGGGCCAGGCGTCCGGCGCGGGTTCGAGGGAGGGCAGATGCCGCTCTACCGCCGCATCCCCAAGCTGCGCGGCATTGCTGGAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGACGAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTTAGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTT-CTCCTTTACCCTTTTCTTTAACATATACTTATTTCTCTTACCTTGTTCCAAAAGTTCCACGTTCAACGAATTTTGAATCCGTGCGATATGCAAGCATTTTTTTTAAAAAAAAAGGA] [+] EMBL AK066527 [CTATCCACCCACACCAGCAAGCCGCTCAGGCGCGCTCTCCGCTCCACCGCCATGGCGTCCATCACCCTCCTCTCCCTCGCTCCCGCGGCCACATTGCTCCACCTCCCGGCCTCCACTTCGCTCTCCACCTCCTTCGTCGCCGCTCCAGGCCCCATCTCCGGCCGCCGGTCCGTCGTCCTCCGCGCCCGCCCGCGCCGCTGCGTCACGGTCGTGTGCAGCGCCGCGGCGGCCGAGGCCGCGGAGGCGGAGCCCGCGGAGAAGTTCCGGCTCGACAACCTGGGCCCGCAGAAGGGGTCGCGGCGGCGCCCGAAGCGGAAGGGGCGCGGTATCGCGGCGGGGCAGGGCGCGAGCTGCGGGTTCGGCATGCGTGGACAGAAGTCGCGCTCGGGGCCAGGCGTCCGGCGCGGGTTCGAGGGAGGGTAGATGCCGCTCTACCGCCGCATCCCCAAGCTGCGCGGCATTGCTGGAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGACGAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTTAGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTT CTCCTTTACCCTTTTCTTTAACATATACTTATTTCTCTTACCTTGTTCCAAAAGTTCCACGTTCAACGAATTTTGAATCCGTGCG ] [+] EMBL CB629883 [ TGCTCCACCTCCCGGCCTCCACTTCGCTCTCCACCTCCTTCGTCGCCGCTCCAGGCCCCATCTCCGGCCGCCGGTCCGTCGTCCTCCGCGCCCGCCCGCGCCGCTGCGTCACGGTCGTGTGCAGCGCCGCGGCGGCCGAGGCCGCGGAGGCGGAGCCCGCGGAGAAGTTCCGGCTCGACAACCTGGGCCCGCAGAAGGGGTCGCGGCGGCGGCCGAAGCGGAAGGGGCGCGGTATCGCGGCGGGGCAGGGCGCGAGCTGCGGGTTCGGCATGCGTGGACAGAAGTCGCGCTCGGGGCCAGGCGTCCGGCGCGGGTTCGAGGGAGGGCAGATGCCGCTCTACCGCCGCATCCCCAAGCTGCGCGGCATTGCTGGAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGACGAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTTAGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTT CTCCTTTACCCTTTTCTTTAAC ] [+] EMBL CB633308 [ CCCGCGCCGCTGCGTCACGCTCGTGTGCAGCGCCGCGGCGGCCGAGGCCGCGGAGGCGGAGCCCGCGGAGAAGTTCCGGCTCGACAACCTGGGCCCGCAGAAGGGGTCGCGGCGGCGGCCGAAGCGGAAGGGGCGCGGTATCGCGGCGGGGCAGGGCGCGAGCTGCGGGTTCGGCATGCGTGGACAGAAGTCGCGCTCGGGGCCAGGCGTCCGGCGCGGGTTCGAGGGAGGGCAGATGCCGCTCTACCGCCGCATCCCCAAGCTGCGCGGCATTGCTGGAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGACGAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTTAGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTT CTCCTTTACCCTTTTCTTTAACATATACTTATTTCTCTTACCTTGTTCCAAAAGTTCCACGTTCAACGAATTTTGAATCCGTGCGATATGCAAG ] [-] EMBL CB629884 [ GCCGCGGCGGCCGAGGCCGCGGAGGCGGAGCCCGCGGAGAAGTTCCGGCTCGACAACCTGGGCCCGCAGAAGGGGTCGCGGCGGCGGCCGAAGCGGAAGGGGCGCGGTATCGCGGCGGGGCAGGGCGCGAGCTGCGGGTTCGGCATGCGTGGACAGAAGTCGCGCTCGGGGCCAGGCGTCCGGCGCGGGTTCGAGGGAGGGCAGATGCCGCTCTACCGCCGCATCCCCAAGCTGCGCGGCATTGCTGGAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGACGAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTTAGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTT CTCCTTTACCCTTTTCTTTAACATATACTTATTTCTCTTCCCTTGTTCCAAAAGTTCGACGTTCAACGAATTTTGAATCCGTGCGATATG ] [-] EMBL CB633309 [ GCCCGCGGAGAAGTTCCGGCTCGACAACCTGGGCCCGCAGAAGGGGTCGCGGCGGCGGCCGAAGCGGAAGGGGCGCGGTATCGCGGCGGGGCAGGGCGCGAGCTGCGGGTTCGGCATGCGTGGACAGAAGTCGCGCTCGGGGCCAGGCGTCCGGCGCGGGTTCGAGGGAGGGCAGATGCCGCTCTACCGCCGCATCCCCAAGCTGCGCGGCATTGCTGGAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGACGAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTTAGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTTGCGCCTTTACCCTTTTCTTTAACATATACTTATTTCTCTTACCTTGTTCCAAAAGTTCCACGTTCAACGAATTTGGAATCCGTGCGATATGCAAGCATTTTTTTTAAAAAAAAAGGA] [+] EMBL CB680536 [ GGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAGCTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAAGAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTT CTCCTTTACCCTTTTCTTTAACATATACTTATTTCTCTTACCTTGTTCCAAAAGTTCCACGTTCAACGAATTTTGAATCCGTGCGATATGCAAG ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||