These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 705 fasta sequence [GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGCAGC-GGCGGCGGCGACGACGA-AGCCGGCCACACCGCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA-GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGCTGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGAAGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCGGCNAGGTGCAGCCTTCCCGGNCGGCATGACACAGGNCGACCTCGN] [+] EMBL C27063 [GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGNAGC GGC GCGGCGACGACGA AGCCGGCCACACCGCCGCCATTNTAATGGCAGACAAGATCTCCACGGTTGTNCTCAACGTTNACCTCGAATGCAATCGATGCTACAAGAAGNTCAGANGAGTCCTTTGCAGGATCCAAGATAAGGGNGAACA ] [+] EMBL C28432 [ CACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTTCTCTTCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGCAGC GGCGNCGGCGACGACGA AGCCGGCCACACCGNCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTGTCGTGGCCGTTCGACGTCGACAAGGTGTGCAAGAAGCTGTGTTGCAAGGCCGGCA GATCATCAAGGACATGNAGGTCAAGGGCAA ] [+] EMBL C27214 [ TCTCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTTCGGCGACCTCCTCCTCCGGCGTCCA NTCGGCCGCAGC GCGGNCGTATCGACGANAGCCGGCCACACNNCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTNTCGGGGCCGTTCGACGCCGACAAGGTGTNCAAGAAGCTGTGCTGCAAGGCCGGCA ] [-] EMBL AU181672 [ tttTTAACNCNTCCTTCNTTTCNTTTTCCTTTTTCGGCNACCTCNTCNTCCGGCGTCCAGTTCGGCCGNAGCGGGCGGCGGCNACNACAA AGCCGGCCACACCGCCGCCNTTNTNATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCNATCGATGCTACAAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTNCGACGAGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGCTGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACGCCGCCGGCGGTG ] [+] EMBL CA756340 [ GCGACCTCCTCCTCCGGCGTCCAGCTCGGCCGCAGC GGCGGCGGCGACGACGA AGCCGGCCACACCGCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACNAGAAGATCAGAAGAGTCCTTTGCAGGATCCAAGATAA GGCGAACATCAAGACGATCTCGTACGACGAGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACNAGGTGTGCAAGAAGCTGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGGGCGGCNAGGACGCCGCCGGCGACNAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGAAGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCGGCNAGGTGCAGCCTTCCCGGNCGGCATGACACAGGNCGACCTCGN] consensusID : consensus_9313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [TGACTTGATGNAATGNNANANAGANATTAGAGGTTCTTTNGCAGATCNAGATAGGGAATTTCAAGANATTTTGTAGANGAGAAGACAATGCGGTGATGTNTNGGGCCTTTAGACNCAGACAAGGTGTGCAAGAAGNTGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCTGCCGCGAAGCCGGAGAAGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCGGCGACGGCGAAGCCCGGCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC] [+] EMBL AA753565 [TGACTTGATGNAATGNNANANAGANATTAGAGGTTCTTTNGCAGATCNAGATAGGGAATTTCAAGANATTTTGTAGANGAGAAGACAATGCGGTGATGTNTNGGGCCTTTAGACNCAGACAAGGTGTGCAAGAAGNTGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAGGGCAAGGAGAACAAGGGCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAGGACGGCGGCGGCGGGAAGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAGAAGGACGGTGGTGGCAAGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCTGCCGCGAAGCCGGAGAAGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCGGCGACGGCGAAGCCCGGCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9313#0 GCCACGCACCCACCACCAACCCAGTACGAACATACACCATCCTTCTCCCCTCTNCTNTTC 60 consensus_9313#1 ------------------------------------------------------------ consensus_9313#0 TCTTCACGCCTCCCTCCTCTCCTCTTCCCTCTCCGGCGACCTCCTCCTCCGGCGTCCAGC 120 consensus_9313#1 ------------------------------------------------------------ consensus_9313#0 TCGGCCGCAGCGGCGGCGGCGACGACGAAGCCGGCCACACCGCCGCCATTCTCATGGCAG 180 consensus_9313#1 ------------------------------------------------------------ consensus_9313#0 ACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGA 240 consensus_9313#1 ----------------------------------TGACTTGATGNAATGNNANANAGANA 26 ** * *** * * * * consensus_9313#0 TCAGAAGAGTCCTTTGCAGGATCCAAGATAAGGCGAACATCAAGACGATCTCGTACGACG 300 consensus_9313#1 TTAGAGGT-TCTTTNGCAGA--TCNAGATAGGG--AATTTCAAGAN-ATTTTGTA-GANG 79 * *** * ** ** **** * ***** ** ** ****** ** * *** ** * consensus_9313#0 AGAAGAACAATGCGGTGATGGTGTCGGGGCCGTTCGACGCCGACAAGGTGTGCAAGAAGC 360 consensus_9313#1 AGAAGA-CAATGCGGTGATGTN--TNGGGCCTTTAGACNCAGACAAGGTGTGCAAGAAGN 136 ****** ************* ***** ** *** * ****************** consensus_9313#0 TGTGCTGCAAGGCCGGCAGGATCATCAAGGACATGCAGGTCAAGGGCAAGGAGAACAAGG 420 consensus_9313#1 TGTGTTGCAAGCCCGGCAGNATTNTCAAGGACATGCANTTCAAGGGCAAGGAGAACAAGG 196 **** ****** ******* ** ************* ********************* consensus_9313#0 GCGGCAAGGACGCCGCCGGCGACAAGGCGAAGCCGGCGGAGAAGGACGGCGGCGGCGGGA 480 consensus_9313#1 GCGGCAAGGACCCCGCCGGAGACAAGGNGAANCCGGCGGAGAAGGACGGCGGCGGCGGGA 256 *********** ******* ******* *** **************************** consensus_9313#0 AGGCGGAGAAGAAGGACGCCGCCGGCGGTGACNAGGCGGAGAAGAAGGACGGTGGTGGCA 540 consensus_9313#1 AGGCGGAGAAGAAGGACCCCGCCGGCGGTGACAAGGCGGAGAAGAAGGACGGTGGTGGCA 316 ***************** ************** *************************** consensus_9313#0 AGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCGCCGCCGCTGCCGCGAAGCCGGAGA 600 consensus_9313#1 AGCCGGAGAAGGAGGCGGCGAAGGCGGACAAGGCCNCCGCCGCTGCCGCGAAGCCGGAGA 376 *********************************** ************************ consensus_9313#0 AGAAAGGTCAGTTCGACGTCGACGACGCGCCGCCGCCGGNCGCGGCGACNGCGAAAGCCG 660 consensus_9313#1 AGAAGNTCAANTTAGACGTTTANGACGCGCCGCCGCCGGCCGCGGCGACGGCGAAGCCCG 436 **** * ** ***** * **************** ********* ***** *** consensus_9313#0 GCNAGGTGCAGCCTT-CCCGGNCGGCATGACACAGGNCGACCTCGN 705 consensus_9313#1 GCAAGGTGCAGCCNTTCCCGGCCGGCATGACACAGGCCGAC----- 477 ** ********** * ***** ************** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||