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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1987 fasta sequence
[CCCGATTGAGAAGAAATTGAAGATGAGAGCGAGGAGGGTGCTCGCAAAGCTTGCTGAGAAAAAGAAATCAGCTGCAGAATATGCACGTGCAGAAAGGAGCTTGGATGGGATTGATATGACATGCAAGATTGTGGACTTTGGAAACGCTTGTTGGGCTGACAAGCAATTTACAGATTTTATTCAGACAAGGCAGTACCGGGCACCAGAGGTCATTCTAGGTTCAGGATATTCATTTCCTGTTGACATGTGGTCATTTGCGTGTATTGCTTTTGAGCTTGCAACAGGGGAAATGCTATTTACACCCAAGGAAGGGCAGGGGTATAGTGAAGATGAGGATCACTTGGCTTTGATGATGGAAATCCTTGGGAAGATACCAAAAAAGATTGCTACCATGGGAACAAGATCAAAGGAGTATTTTGACCGTCATGGAGATCTGAAGCGGATAAGAAGATTGAAGTTCTCATCTATTGAACGTGTCCTAGTTGACAAATACAAAATTTCTGAATCCGATGCACGGGAATTTGCCGAGTTTCTTTGCCCTTTGTTTGATTTTGCCCCAGAGAAGCGTCCAACAGCTGCACAGTGCCTACAACACAAATGGCTTCAATATAGTGATGGCAAGAACTATGGGACTCTCAACATTAGTGATGTCAAAAATGCTAGTGTTACATGCAGCCCTGGAACGACTGCCAGCAGTGATTCTAAGAGCATTGATGTAACACGCAACATTGGAGACAAGCCTGACAGTTATGCCGAGAGAGCTGATGCAAAGTGCAATACTAGCAAAAAAAGCATCATCAACAGTAATTCTGAGAATTCTAATGTACAACCCAATACTGCAAGTGTTGGCAATAGAAATTCCAAAATTGATGATGTAAATTCTAATACTGGGAGCATCACTAACAAGGATTCCAAAAACACTGTTATAAAGCCCAGTATTGGAAGCTTCGTGAACAGAAATGCTGAAACAGTTGATGTAAAACCCAACATTGGCAGCATAACCAGCAGAGGTGACAGTAGTAGTGACACCAAGAGCAACATTGGAAGCGTTGCCAGTAAAGATGCCAAAACTATTGATGCAAAACCCAGCACCAGCAGCATCACCAGCCAGGATAGTAAGATTGGTGACGGAAGGAGCAACATTGATGGCATTGCCAACAGAGATGCCAAGACCGCTGATGTGAAGCATAACATTCGAAGCGTTGTTAACACTTATTTGAGGAATTTTGATGTGAAGCACAACACTGGAAACATTGTTGATGGTGGTGTCAAGCACTCAGATTTGAAACCAGGCACTGTAAGTGCT-GCCAATGTCGATTCCAAGAGTATAAGTGCAAAGCCCAGCACTGGAAGTTTTGAGAACAGTGATGCCAAGAGTATTAGTGCAAAGACCAG-CACTGGAAGTTTTGACAACAGTGATGCCAGAAATATTATGAAGGCAAACACTGGAATTGTTGCTAACAATGATATCAAGGATACTGATGTACAGACTAATACCGAAAGTGTTACCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGTTGCTGCAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCGGTGA-GAAAAATAATCCATGCTAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAGGTTAATAACTACCCTTTGTGATGGAGCCAATCTTCAAGATTTGAGGATTTGGCAAAAGCACCAGCTGATGCTTTTTACATATCTTATATGTTCCTGCTAACTGTAAAAAAGTTTTGTATTTGCACACAGAATACACATGGAGGTACATATTTCTTATTTACCTTTGTTAATGTTCACAGATTTTATTGACATTCAAGGTACATAAACATTTTTTTGGGCT--A--AAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK105684 [CCCGATTGAGAAGAAATTGAAGATGAGAGCGAGGAGGGTGCTCGCAAAGCTTGCTGAGAAAAAGAAATCAGCTGCAGAATATGCACGTGCAGAAAGGAGCTTGGATGGGATTGATATGACATGCAAGATTGTGGACTTTGGAAACGCTTGTTGGGCTGACAAGCAATTTACAGATTTTATTCAGACAAGGCAGTACCGGGCACCAGAGGTCATTCTAGGTTCAGGATATTCATTTCCTGTTGACATGTGGTCATTTGCGTGTATTGCTTTTGAGCTTGCAACAGGGGAAATGCTATTTACACCCAAGGAAGGGCAGGGGTATAGTGAAGATGAGGATCACTTGGCTTTGATGATGGAAATCCTTGGGAAGATACCAAAAAAGATTGCTACCATGGGAACAAGATCAAAGGAGTATTTTGACCGTCATGGAGATCTGAAGCGGATAAGAAGATTGAAGTTCTCATCTATTGAACGTGTCCTAGTTGACAAATACAAAATTTCTGAATCCGATGCACGGGAATTTGCCGAGTTTCTTTGCCCTTTGTTTGATTTTGCCCCAGAGAAGCGTCCAACAGCTGCACAGTGCCTACAACACAAATGGCTTCAATATAGTGATGGCAAGAACTATGGGACTCTCAACATTAGTGATGTCAAAAATGCTAGTGTTACATGCAGCCCTGGAACGACTGCCAGCAGTGATTCTAAGAGCATTGATGTAACACGCAACATTGGAGACAAGCCTGACAGTTATGCCGAGAGAGCTGATGCAAAGTGCAATACTAGCAAAAAAAGCATCATCAACAGTAATTCTGAGAATTCTAATGTACAACCCAATACTGCAAGTGTTGGCAATAGAAATTCCAAAATTGATGATGTAAATTCTAATACTGGGAGCATCACTAACAAGGATTCCAAAAACACTGTTATAAAGCCCAGTATTGGAAGCTTCGTGAACAGAAATGCTGAAACAGTTGATGTAAAACCCAACATTGGCAGCATAACCAGCAGAGGTGACAGTAGTAGTGACACCAAGAGCAACATTGGAAGCGTTGCCAGTAAAGATGCCAAAACTATTGATGCAAAACCCAGCACCAGCAGCATCACCAGCCAGGATAGTAAGATTGGTGACGGAAGGAGCAACATTGATGGCATTGCCAACAGAGATGCCAAGACCGCTGATGTGAAGCATAACATTCGAAGCGTTGTTAACACTTATTTGAGGAATTTTGATGTGAAGCACAACACTGGAAACATTGTTGATGGTGGTGTCAAGCACTCAGATTTGAAACCAGGCACTGTAAGTGCT GCCAATGTCGATTCCAAGAGTATAAGTGCAAAGCCCAGCACTGGAAGTTTTGAGAACAGTGATGCCAAGAGTATTAGTGCAAAGACCAG CACTGGAAGTTTTGACAACAGTGATGCCAGAAATATTATGAAGGCAAACACTGGAATTGTTGCTAACAATGATATCAAGGATACTGATGTACAGACTAATACCGAAAGTGTTACCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGTTGCTGCAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCGGTGA GAAAAATAATCCATGCTAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAGGTTAATAACTACCCTTTGTGATGGAGCCAATCTTCAAGATTTGAGGATTTGGCAAAAGCACCAGCTGATGCTTTTTACATATCTTATATGTTCCTGCTAACTGTAAAAAAGTTTTGTATTTGCACACAGAATACACATGGAGGTACATA ]
[+] EMBL AU031701 [ TCACCAGCCAGGATAGTAAGATTGGTGACGGAAGGAGCAACATTGATGGCATTGCCAACAGAGATGCCAAGACCGCTGATGTGAAGCATAACATTCGAAGCGTTGTTAACACTTATTTGAGGAATTTTGATGTGAAGCACAACACTGGAAACATTGTTGATGGTGGTGTCAAGCACTCAGATTTGAAACCAGGCACTGTAAGT CTGGCCAATGTCGATTCCAAGAGTATAAGTGCAAAGCCCAGCACTGGAAGTTTTGAGAACAGTGATGCCAAGAGTATTAGTGCAAAGACCAG CACTGGAAGTTTTGACAACAGTGATGCCAGAAATATTATGAAGGCAAACACTGGAATTGTTGCTAACAATGATATCAAGGATACTGATGTACAGACTAATACCGAAAGTGTTACCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGTTGCTGCAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCGGTGANGAAAAATAATCCATGCTAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGNTCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAGGgn ]
[-] EMBL CA759814 [ ttttAGTGCAAAGCCCAGCCCTGGAAGTTTGTAGACCAGTGATGCCAAGAGTATTAGTGCAAAGACCAGCCCCTGGAAGTTTTGACAACAGTGATGCCAGAAATATTATGAAGGCAAACACTGGAATTGTTGCTAACAATGATGTCAAGGATACTGATGTACAGACTAATACCGAAAGTGTTTCCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGTTGCTGCAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCGGTGA GAAAAATAATCCATACTAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAGGTTAATAACTACCCTTTGTGATGGAGCCAATTTTCAAGATTTGAGGATTTGGCAAAAGCCCCAGCTGATGCTTTTTACATATTTTATATGTTCCTGCTAACTGTAAAAAAGTTTTGTATTTGCCCCCAGAATACACATGGAGGTACATATTTTTTATTTACCTTTGTTAATGTTCACAGATTTTATTGACATTCAAGGTACATAAACATTTTTTTGGGCTTGATCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031702 [ TGTTGCTAACAATGATATCAAGGATACTGATGTACAGACTAATNCCGAAAGTGTTACCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGTTGCTGCAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCGGTGA GAAAAATAATCCATGCTAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAGGTTAATAACTACCCTTTGTGATGGAGCCAATCTTCAAGATTTGAGGATTTGGCAAAAGCACCAGCTGATGCTTTTTACATATCTTATATGTTCCTGCTAACTGTAAAAAAGTTTTGTATTTGCACACAGAATACACATGGAGGTACATATTTCTTAaaaa ]
[+] EMBL AU094021 [ TCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAGGTTAATAACTNCCCTTTGTGATGGAGCCAATCTTCAAGATTTGAGGATTTGGCAAAAGCACCAGCTGATGCTTTTTACATATCTTATATGTTCCTGCTAACTGTAAAAAAGTTTTGTATTTGCACACAGAATACACATGGAGGTACATATTTCTTATTTACCTTTGTTAATGTTCACAGATTTTATTGACATTCAAGGTACATAAACATTCTTTTGGGCT A AAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_9322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[GCATAGCAANCATGGAAAATATCGGTGAGAAAAATAATCCATACTAAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGGATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAAGGTTAATAACTACCCTTTGTGATGGAGCCCATCTTCCAGAATTTGAAGAATTGGCAAAAGCCCCCCGCTGAATGCTTTTTACATATCTTAATATGTTCCCGGCC]
[+] EMBL AA754617 [GCATAGCAANCATGGAAAATATCGGTGAGAAAAATAATCCATACTAAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGGATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGATTGCTGAAGGTTAATAACTACCCTTTGTGATGGAGCCCATCTTCCAGAATTTGAAGAATTGGCAAAAGCCCCCCGCTGAATGCTTTTTACATATCTTAATATGTTCCCGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9322#0 CCCGATTGAGAAGAAATTGAAGATGAGAGCGAGGAGGGTGCTCGCAAAGCTTGCTGAGAA 60
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAAGAAATCAGCTGCAGAATATGCACGTGCAGAAAGGAGCTTGGATGGGATTGATATGAC 120
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 ATGCAAGATTGTGGACTTTGGAAACGCTTGTTGGGCTGACAAGCAATTTACAGATTTTAT 180
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TCAGACAAGGCAGTACCGGGCACCAGAGGTCATTCTAGGTTCAGGATATTCATTTCCTGT 240
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TGACATGTGGTCATTTGCGTGTATTGCTTTTGAGCTTGCAACAGGGGAAATGCTATTTAC 300
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 ACCCAAGGAAGGGCAGGGGTATAGTGAAGATGAGGATCACTTGGCTTTGATGATGGAAAT 360
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CCTTGGGAAGATACCAAAAAAGATTGCTACCATGGGAACAAGATCAAAGGAGTATTTTGA 420
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CCGTCATGGAGATCTGAAGCGGATAAGAAGATTGAAGTTCTCATCTATTGAACGTGTCCT 480
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AGTTGACAAATACAAAATTTCTGAATCCGATGCACGGGAATTTGCCGAGTTTCTTTGCCC 540
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TTTGTTTGATTTTGCCCCAGAGAAGCGTCCAACAGCTGCACAGTGCCTACAACACAAATG 600
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 GCTTCAATATAGTGATGGCAAGAACTATGGGACTCTCAACATTAGTGATGTCAAAAATGC 660
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TAGTGTTACATGCAGCCCTGGAACGACTGCCAGCAGTGATTCTAAGAGCATTGATGTAAC 720
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 ACGCAACATTGGAGACAAGCCTGACAGTTATGCCGAGAGAGCTGATGCAAAGTGCAATAC 780
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TAGCAAAAAAAGCATCATCAACAGTAATTCTGAGAATTCTAATGTACAACCCAATACTGC 840
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAGTGTTGGCAATAGAAATTCCAAAATTGATGATGTAAATTCTAATACTGGGAGCATCAC 900
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TAACAAGGATTCCAAAAACACTGTTATAAAGCCCAGTATTGGAAGCTTCGTGAACAGAAA 960
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TGCTGAAACAGTTGATGTAAAACCCAACATTGGCAGCATAACCAGCAGAGGTGACAGTAG 1020
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TAGTGACACCAAGAGCAACATTGGAAGCGTTGCCAGTAAAGATGCCAAAACTATTGATGC 1080
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAAACCCAGCACCAGCAGCATCACCAGCCAGGATAGTAAGATTGGTGACGGAAGGAGCAA 1140
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CATTGATGGCATTGCCAACAGAGATGCCAAGACCGCTGATGTGAAGCATAACATTCGAAG 1200
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CGTTGTTAACACTTATTTGAGGAATTTTGATGTGAAGCACAACACTGGAAACATTGTTGA 1260
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TGGTGGTGTCAAGCACTCAGATTTGAAACCAGGCACTGTAAGTGCTGCCAATGTCGATTC 1320
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CAAGAGTATAAGTGCAAAGCCCAGCACTGGAAGTTTTGAGAACAGTGATGCCAAGAGTAT 1380
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TAGTGCAAAGACCAGCACTGGAAGTTTTGACAACAGTGATGCCAGAAATATTATGAAGGC 1440
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAACACTGGAATTGTTGCTAACAATGATATCAAGGATACTGATGTACAGACTAATACCGA 1500
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAGTGTTACCAGCGGCGACGACCTAAACGACATTGATAGAAAGCCAAACATTGGACGTGT 1560
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TGCTGCAAGTATACAGAGGCTGGAGAGCAGCATAGGCAAAGTGCAAAGTGGAAAATATCG 1620
consensus_9322#1 -----------------------------------GCATAGCA-ANCATGGAAAATATCG 24
*** ** * ************
consensus_9322#0 GTGAGAAAAATAATCCATGCTA-GTGCTGATCCAGTTACCTATTTTGATCGGCTTGG-AT 1678
consensus_9322#1 GTGAGAAAAATAATCCATACTAAGTGCTGATCCAGTTACCTATTTTGATCGGCTTGGGAT 84
****************** *** ********************************** **
consensus_9322#0 CTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGAT 1738
consensus_9322#1 CTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATTTGTGTCATTGATTTGAT 144
************************************************************
consensus_9322#0 TGCTGA-GGTTAATAACTACCCTTTGTGATGGAGCCAATCTTCAAGA-TTTGAGGATTTG 1796
consensus_9322#1 TGCTGAAGGTTAATAACTACCCTTTGTGATGGAGCCCATCTTCCAGAATTTGAAGAATTG 204
****** ***************************** ****** *** ***** ** ***
consensus_9322#0 GCAAAAGCACCA-GCTGA-TGCTTTTTACATATCTTA-TATGTTCCTGCTAACTGTAAAA 1853
consensus_9322#1 GCAAAAGCCCCCCGCTGAATGCTTTTTACATATCTTAATATGTTCCCGGCC--------- 255
******** ** ***** ****************** ******** *
consensus_9322#0 AAGTTTTGTATTTGCACACAGAATACACATGGAGGTACATATTTCTTATTTACCTTTGTT 1913
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AATGTTCACAGATTTTATTGACATTCAAGGTACATAAACATTTTTTTGGGCTAAAAAAAA 1973
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAAAAAAAAAAAAA 1987
consensus_9322#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||