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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence
[AAGGGGGGCTCTTCGGCAGGGAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGGCCTTGCACAGCAGGCTAACTTGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTA-CGAGAATTA-CGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCA-CTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAGACCAANTNAGATTGCAGCATCGATCGACCGNGCATGACCTAACATCACATGCATGNGAATGNGTACATATAACGCTC-TTAAACCGGATTAANAA-ATGATCCGGGCATGTACATNCGAAAGG-AANAAAAGGCTGGTACAAAGCCCTTCTTCCATTACNAAAAAAAAAA]
[+] EMBL CA765941 [AAGGGGGGCTCTTCGGCAGGGAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGGCCTTGCACAGCAGGCTAACTTGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTA CGAGAATTA CGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCA CTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAGACCAANTNAGATTGCAGCATCGATCGACCGNGCATGACCTAACATCACATGCATGNGAATGNGTACATATAACGCTC TTAAACCGGATTAANAA ATGATCCGGGCATGTACATNCGAAAGG AANAAAAGGCTGGTACAAAG ]
[+] EMBL BQ909099 [ ACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTACCGAGAATTACCGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCACCTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAGACCCATTAAGATTGCAGCATCGATCGACCGTGCATGACCTAACATCACATGCATGTG ATGTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGCCTGTACATCCGAAAGGAAAGAAAAGGCTGTTACAAACCCCTTCTTCCATTACNAAAAAAAAAA]
consensusID : consensus_9325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[GAGATGTACGAATCACAGGACAACCAAGCTCTTCGGCAGGGAAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGANGGAGAAGAAGGTGTCCGCGTCCATCGTCNCCGGAGCGACGGTGGCATGGTATCTGTTCNAGGTGGCGGANTACCATTTCCTGTCNCTGGCATGCTACCTCGCCATGCTCGGCNTGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAAANTCCCTNAANTTTTTGTTTCGNAAAAAACCNCCAGNCATTANTCCTGGCCTTGCACANCNGGCTAACTTGGTTCGTNCANAGGCTCNACAANTTTGCTTNTGNAAAGGACNCAAANTNTTCACCTTNACGGTNTTCNCCCNNTCCATANCTTCAGTNATCGCAAACCTGCTTCANCCCCCTAACCCNCCNNTACCAANTTGTTGCCTAGGGCCCCATNAACCCTCCCTTTTANATNTTCAAAAAATTTACAAAAACCAAAGGTTCAAACCCCCTGTNTTTCNAAACGGGGGGGTCCCNCAAANTTCTNCCCGAAAACCCNCTTTTCGGGGAAAAAATCAAAAACCCNGGNN]
[+] EMBL BE229756 [GAGATGTACGAATCACAGGACAACCAAGCTCTTCGGCAGGGAAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGANGGAGAAGAAGGTGTCCGCGTCCATCGTCNCCGGAGCGACGGTGGCATGGTATCTGTTCNAGGTGGCGGANTACCATTTCCTGTCNCTGGCATGCTACCTCGCCATGCTCGGCNTGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAAANTCCCTNAANTTTTTGTTTCGNAAAAAACCNCCAGNCATTANTCCTGGCCTTGCACANCNGGCTAACTTGGTTCGTNCANAGGCTCNACAANTTTGCTTNTGNAAAGGACNCAAANTNTTCACCTTNACGGTNTTCNCCCNNTCCATANCTTCAGTNATCGCAAACCTGCTTCANCCCCCTAACCCNCCNNTACCAANTTGTTGCCTAGGGCCCCATNAACCCTCCCTTTTANATNTTCAAAAAATTTACAAAAACCAAAGGTTCAAACCCCCTGTNTTTCNAAACGGGGGGGTCCCNCAAANTTCTNCCCGAAAACCCNCTTTTCGGGGAAAAAATCAAAAACCCNGGNN]
consensusID : consensus_9325#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[TTGTTCATTGACAATGCAATGGCGAAGCCGATTATAAGAACAAATCCTGGGCAGTTGTATTGCCACATCAAATTCGGATATCAACAGAATGGCTATAACTCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCAC]
[+] EMBL AY164901 [TTGTTCATTGACAATGCAATGGCGAAGCCGATTATAAGAACAAATCCTGGGCAGTTGTATTGCCACATCAAATTCGGATATCAACAGAATGGCTATAACTCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCAC]
consensusID : consensus_9325#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 81 fasta sequence
[CCGTGCATGTACATCCGAAAGGAAAGAAAAGGCTGTTACAAAGCTGTTCTTCCATTAATATTGTTCATAGTAACATACACA]
[+] EMBL AB088486 [CCGTGCATGTACATCCGAAAGGAAAGAAAAGGCTGTTACAAAGCTGTTCTTCCATTAATATTGTTCATAGTAACATACACA]
consensusID : consensus_9325#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 47 fasta sequence
[GTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGC]
[+] EMBL AB088492 [GTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9325#1 ------------------------------------------------------------
consensus_9325#2 ------------------------------------------------------------
consensus_9325#0 AAGGGGGGCTCTTCGGCAGGGAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTG 60
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 ------------------------------------------------------------
consensus_9325#2 ------------------------------------------------------------
consensus_9325#0 CAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGG 120
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 ------------------------------------------------------------
consensus_9325#2 ------------------------------------------------------------
consensus_9325#0 TGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCG 180
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 ------------------------------------------------------------
consensus_9325#2 ------------------------------------------------------------
consensus_9325#0 CCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGC 240
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 ------------------------------------------------------------
consensus_9325#2 ------------------------------------------------------------
consensus_9325#0 CGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGG 300
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 -------------------------------------------GAGATGTACGAATCACA 17
consensus_9325#2 ----------------------------TTGTTCATTGACAATGCAATG-GCGAAGCCGA 31
consensus_9325#0 CCTTGCACAGCAGGCTAACTTGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGG 360
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 GGACAACCA-AGCTCTTCGGCAGGGAAAAGGCCACTGCAT-----GACGCC--CTAGGTG 69
consensus_9325#2 TTATAAGAACAAATCCTGGGCAGTTGTATTGCCACATCAAATTCGGATATCAACAGAATG 91
consensus_9325#0 ACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCT 420
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 GACACAAAGCTGCAGACATCATCCTGTGGANGGAGAAGAAGGTGTCCGCGTCCATCGTCN 129
consensus_9325#2 GCTATAACTCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCG 151
consensus_9325#0 GCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGA 480
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 CCGGAGCGACGGTGGCATGGTATCTGTTCNAGGTGGCGGANTACCATTTCCTGTCNCTGG 189
consensus_9325#2 CCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGG 211
consensus_9325#0 TGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCC 540
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 CATGCTACCTCGCCATGCTCGGCNTGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTT 249
consensus_9325#2 CATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTT 271
consensus_9325#0 GGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAG 600
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 TCTTCAACCTGCCGGCTCCAAAANTCCCTNAANTTTTTGTTTCGNAAAAAACCNCCAGNC 309
consensus_9325#2 TCTTCAACCTGC------------------------------------------------ 283
consensus_9325#0 CCACTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAG 660
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 ATTANTCCTGGCCTTGCACANCNGGCTAACTTGGTTCGTNCANAGGCTCNACAANTTTGC 369
consensus_9325#2 -----------------------------------------------TCTACGACATTGC 296
consensus_9325#0 ACCAANTNAGATTGCAGCATCGATCGACCGNGCATGACCTAACATCACATGCATGNGAAT 720
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------CCGTGCATGTAC 12
consensus_9325#1 TTNTGNAAAGGACN-CAAANTNTTCACCTTNACGGTNTTCNCCCNNTCCATANCTTCAGT 428
consensus_9325#2 TTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGT 356
consensus_9325#0 GNGTACATATAACGCTCTT-AAACCGGATTAANAA-ATGATCCGGGCATGTACATNCGAA 778
consensus_9325#4 GTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGC------------- 47
consensus_9325#3 ATCCGAAAGGAAAG---AAAAGGCTGTTACAAAGCTGTTCTTC-CATTAATATTGTTCAT 68
* * * * *
consensus_9325#1 NATCGCAAACCTGCTTCANCCCCCTAACCCNCCNNTACCAANTTGTTGCCTAGGGCCCCA 488
consensus_9325#2 GATCGCAAGC-TGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGT--GCTAGG-CACCA 412
consensus_9325#0 AGGAANAAAAGGCTGGTACAAAGCCCTTCTTCCATTACNAAAAAAAAAA----------- 827
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 AGTAACATACACA----------------------------------------------- 81
consensus_9325#1 TNAACCCTCCCTTTTANATNTTCAAAAAATTTACAAAAACCAAAGGTTCAAACCCCCTGT 548
consensus_9325#2 TGA-CGCTGCCTGT--GATGTACGAGAA--TTACGAGAGC--GAGGTC--GACCACCTGG 463
consensus_9325#0 ------------------------------------------------------------
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 NTTTCNAAACGGGGGGGTCCCNCAAANTTCTNCCCGAAAACCCNCTTTTCGGGGAAAAAA 608
consensus_9325#2 TGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCA 523
consensus_9325#0 ------------------------------------------------------------
consensus_9325#4 ------------------------------------------------------------
consensus_9325#3 ------------------------------------------------------------
consensus_9325#1 TCAAAAACCCNGGNN------------- 623
consensus_9325#2 AGAAGATCCCAAGAGGGAGAGGAGCCAC 551
consensus_9325#0 ----------------------------
consensus_9325#4 ----------------------------
consensus_9325#3 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||