These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [AAGGGGGGCTCTTCGGCAGGGAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGGCCTTGCACAGCAGGCTAACTTGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTA-CGAGAATTA-CGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCA-CTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAGACCAANTNAGATTGCAGCATCGATCGACCGNGCATGACCTAACATCACATGCATGNGAATGNGTACATATAACGCTC-TTAAACCGGATTAANAA-ATGATCCGGGCATGTACATNCGAAAGG-AANAAAAGGCTGGTACAAAGCCCTTCTTCCATTACNAAAAAAAAAA] [+] EMBL CA765941 [AAGGGGGGCTCTTCGGCAGGGAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGGCCTTGCACAGCAGGCTAACTTGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTA CGAGAATTA CGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCA CTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAGACCAANTNAGATTGCAGCATCGATCGACCGNGCATGACCTAACATCACATGCATGNGAATGNGTACATATAACGCTC TTAAACCGGATTAANAA ATGATCCGGGCATGTACATNCGAAAGG AANAAAAGGCTGGTACAAAG ] [+] EMBL BQ909099 [ ACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTACCGAGAATTACCGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCACCTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAGACCCATTAAGATTGCAGCATCGATCGACCGTGCATGACCTAACATCACATGCATGTG ATGTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGCCTGTACATCCGAAAGGAAAGAAAAGGCTGTTACAAACCCCTTCTTCCATTACNAAAAAAAAAA] consensusID : consensus_9325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [GAGATGTACGAATCACAGGACAACCAAGCTCTTCGGCAGGGAAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGANGGAGAAGAAGGTGTCCGCGTCCATCGTCNCCGGAGCGACGGTGGCATGGTATCTGTTCNAGGTGGCGGANTACCATTTCCTGTCNCTGGCATGCTACCTCGCCATGCTCGGCNTGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAAANTCCCTNAANTTTTTGTTTCGNAAAAAACCNCCAGNCATTANTCCTGGCCTTGCACANCNGGCTAACTTGGTTCGTNCANAGGCTCNACAANTTTGCTTNTGNAAAGGACNCAAANTNTTCACCTTNACGGTNTTCNCCCNNTCCATANCTTCAGTNATCGCAAACCTGCTTCANCCCCCTAACCCNCCNNTACCAANTTGTTGCCTAGGGCCCCATNAACCCTCCCTTTTANATNTTCAAAAAATTTACAAAAACCAAAGGTTCAAACCCCCTGTNTTTCNAAACGGGGGGGTCCCNCAAANTTCTNCCCGAAAACCCNCTTTTCGGGGAAAAAATCAAAAACCCNGGNN] [+] EMBL BE229756 [GAGATGTACGAATCACAGGACAACCAAGCTCTTCGGCAGGGAAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTGCAGACATCATCCTGTGGANGGAGAAGAAGGTGTCCGCGTCCATCGTCNCCGGAGCGACGGTGGCATGGTATCTGTTCNAGGTGGCGGANTACCATTTCCTGTCNCTGGCATGCTACCTCGCCATGCTCGGCNTGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCCGGCTCCAAAANTCCCTNAANTTTTTGTTTCGNAAAAAACCNCCAGNCATTANTCCTGGCCTTGCACANCNGGCTAACTTGGTTCGTNCANAGGCTCNACAANTTTGCTTNTGNAAAGGACNCAAANTNTTCACCTTNACGGTNTTCNCCCNNTCCATANCTTCAGTNATCGCAAACCTGCTTCANCCCCCTAACCCNCCNNTACCAANTTGTTGCCTAGGGCCCCATNAACCCTCCCTTTTANATNTTCAAAAAATTTACAAAAACCAAAGGTTCAAACCCCCTGTNTTTCNAAACGGGGGGGTCCCNCAAANTTCTNCCCGAAAACCCNCTTTTCGGGGAAAAAATCAAAAACCCNGGNN] consensusID : consensus_9325#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TTGTTCATTGACAATGCAATGGCGAAGCCGATTATAAGAACAAATCCTGGGCAGTTGTATTGCCACATCAAATTCGGATATCAACAGAATGGCTATAACTCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCAC] [+] EMBL AY164901 [TTGTTCATTGACAATGCAATGGCGAAGCCGATTATAAGAACAAATCCTGGGCAGTTGTATTGCCACATCAAATTCGGATATCAACAGAATGGCTATAACTCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGCTCTACGACATTGCTTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCTGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGATGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCAC] consensusID : consensus_9325#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 81 fasta sequence [CCGTGCATGTACATCCGAAAGGAAAGAAAAGGCTGTTACAAAGCTGTTCTTCCATTAATATTGTTCATAGTAACATACACA] [+] EMBL AB088486 [CCGTGCATGTACATCCGAAAGGAAAGAAAAGGCTGTTACAAAGCTGTTCTTCCATTAATATTGTTCATAGTAACATACACA] consensusID : consensus_9325#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 47 fasta sequence [GTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGC] [+] EMBL AB088492 [GTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9325#1 ------------------------------------------------------------ consensus_9325#2 ------------------------------------------------------------ consensus_9325#0 AAGGGGGGCTCTTCGGCAGGGAAAGGCCACTGCATGACGCCCTAGGTGGACACAAAGCTG 60 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 ------------------------------------------------------------ consensus_9325#2 ------------------------------------------------------------ consensus_9325#0 CAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCGCCGGAGCGACGG 120 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 ------------------------------------------------------------ consensus_9325#2 ------------------------------------------------------------ consensus_9325#0 TGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGGCATGCTACCTCG 180 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 ------------------------------------------------------------ consensus_9325#2 ------------------------------------------------------------ consensus_9325#0 CCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTTTCTTCAACCTGC 240 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 ------------------------------------------------------------ consensus_9325#2 ------------------------------------------------------------ consensus_9325#0 CGGCTCCAAGAATCCCTGAAATTTTTGTGTCGGAGAGAACCACCAGGCAAGTGATCCTGG 300 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 -------------------------------------------GAGATGTACGAATCACA 17 consensus_9325#2 ----------------------------TTGTTCATTGACAATGCAATG-GCGAAGCCGA 31 consensus_9325#0 CCTTGCACAGCAGGCTAACTTGGTTCGTGCACAGGCTCTACGACATTGCTTGTGGAAAGG 360 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 GGACAACCA-AGCTCTTCGGCAGGGAAAAGGCCACTGCAT-----GACGCC--CTAGGTG 69 consensus_9325#2 TTATAAGAACAAATCCTGGGCAGTTGTATTGCCACATCAAATTCGGATATCAACAGAATG 91 consensus_9325#0 ACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGTGATCGCAAGCT 420 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 GACACAAAGCTGCAGACATCATCCTGTGGANGGAGAAGAAGGTGTCCGCGTCCATCGTCN 129 consensus_9325#2 GCTATAACTCTGCAGACATCATCCTGTGGAGGGAGAGGAGGGTGTCGGCGTCCATCGTCG 151 consensus_9325#0 GCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGTGCTAGGCACCATGACGCTGCCTGTGA 480 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 CCGGAGCGACGGTGGCATGGTATCTGTTCNAGGTGGCGGANTACCATTTCCTGTCNCTGG 189 consensus_9325#2 CCGGAGCGACGGTGGCATGGTATCTGTTCGAGGTGGCGGAGTACCATTTCCTGTCGCTGG 211 consensus_9325#0 TGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCC 540 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 CATGCTACCTCGCCATGCTCGGCNTGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTT 249 consensus_9325#2 CATGCTACCTCGCCATGCTCGGCATGCTCGTCGTCTTCATATGGGCCAATGCTTCTGCTT 271 consensus_9325#0 GGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAG 600 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 TCTTCAACCTGCCGGCTCCAAAANTCCCTNAANTTTTTGTTTCGNAAAAAACCNCCAGNC 309 consensus_9325#2 TCTTCAACCTGC------------------------------------------------ 283 consensus_9325#0 CCACTGCAAATTGAATCAATTGATCAGCAACTAATCAACCAAGGAGATCGATCGATCGAG 660 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 ATTANTCCTGGCCTTGCACANCNGGCTAACTTGGTTCGTNCANAGGCTCNACAANTTTGC 369 consensus_9325#2 -----------------------------------------------TCTACGACATTGC 296 consensus_9325#0 ACCAANTNAGATTGCAGCATCGATCGACCGNGCATGACCTAACATCACATGCATGNGAAT 720 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------CCGTGCATGTAC 12 consensus_9325#1 TTNTGNAAAGGACN-CAAANTNTTCACCTTNACGGTNTTCNCCCNNTCCATANCTTCAGT 428 consensus_9325#2 TTGTGGAAAGGACATCAAAATGTTCATCTTGACGGTGTTCTCCCTGTTCATAGCGTCAGT 356 consensus_9325#0 GNGTACATATAACGCTCTT-AAACCGGATTAANAA-ATGATCCGGGCATGTACATNCGAA 778 consensus_9325#4 GTGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGC------------- 47 consensus_9325#3 ATCCGAAAGGAAAG---AAAAGGCTGTTACAAAGCTGTTCTTC-CATTAATATTGTTCAT 68 * * * * * consensus_9325#1 NATCGCAAACCTGCTTCANCCCCCTAACCCNCCNNTACCAANTTGTTGCCTAGGGCCCCA 488 consensus_9325#2 GATCGCAAGC-TGCTTCAGCTCCCTGACTCTCCTGTACCTAGTTGT--GCTAGG-CACCA 412 consensus_9325#0 AGGAANAAAAGGCTGGTACAAAGCCCTTCTTCCATTACNAAAAAAAAAA----------- 827 consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 AGTAACATACACA----------------------------------------------- 81 consensus_9325#1 TNAACCCTCCCTTTTANATNTTCAAAAAATTTACAAAAACCAAAGGTTCAAACCCCCTGT 548 consensus_9325#2 TGA-CGCTGCCTGT--GATGTACGAGAA--TTACGAGAGC--GAGGTC--GACCACCTGG 463 consensus_9325#0 ------------------------------------------------------------ consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 NTTTCNAAACGGGGGGGTCCCNCAAANTTCTNCCCGAAAACCCNCTTTTCGGGGAAAAAA 608 consensus_9325#2 TGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATCGATTCTGGTGTTTTCA 523 consensus_9325#0 ------------------------------------------------------------ consensus_9325#4 ------------------------------------------------------------ consensus_9325#3 ------------------------------------------------------------ consensus_9325#1 TCAAAAACCCNGGNN------------- 623 consensus_9325#2 AGAAGATCCCAAGAGGGAGAGGAGCCAC 551 consensus_9325#0 ---------------------------- consensus_9325#4 ---------------------------- consensus_9325#3 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||