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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1967 fasta sequence
[GCTGGCTCCTTCTTCCGCCGCACGCTACCCCTCCTCCCCGACCCCGCCGCCCCGATGAGCGGCCGCGACAACCACCAATGGCCGCCGCCGCACCGAGGCTACGACCCCCGGGACCCCGCCGCCGCGTGGCAGGGCGACGCCTCGACCTCCGCCGCCGCCGCGGCGGCGGCCGCGGGGGTAAACCCCTACATCTACGTCCCCAACCCCCAGTACGCCCCCAACCCTCTCAATCTCGTCCTCAATCATGTGCTCCACAACCCCGCCGCCCTCGCCGCCTACCATCACCAGCAGCAGCAACAGTACCACCACCACCAGCAACTCCTCCATTCATCTGCGTACCACCAAAACCCTACCCATAATCTCCAGCACCGCGCTGCCGTCCCTGCACCAGCAGCACCGGCGGCCGCCCCTAGCATCCAGCACCGCCCTGTCGCCCCCGCGACAGCCGCGGCCGCGCCGGGGCAGCCTCAGCCGAAGAAGAAGAAGAAACAGAAGGAGCCGGCTCCGCAGGCGCATCCCCCGCCACCCCTGCCCCCACCGCAGCAGCAGCAGCAGCAGCCAAAGCCGCAGCAGCAGCCGGGGGCTCTTGAGAGGGCGCAGGCGGCGGCGAGGAAGGTGCGGGACGAGATCATTAAGGCTGGTGAGGGCGTTACAGGGTGGAAGATAGCGCAGGCGGTGCTGGTGGCGCTCAAAGTGGATTCCTGGGGCTCTCTTGGTGTCCAGCTCCATGAAGTACCCCTCCTGCGCGACCTCTTCCTCGTCGAGGGCAAGGTGAATACATTCATCCATTGCTATGTTGCAGCAAGGAAAATTGTTTCAGTTTATGATTTAGAGTCTGAGATATGCAAAAATGAGAGCATTGGACAGTTTGAAGAGTTGGGGTTGGGGCCTTTTCTTCAGCATCCACTTGTTGCACATTATTTTTCAGTACCTGCCGATTTGTCCTTGGTACCTAAGCTTAGTAGTGACGAGATTATAAATTGGCTTCAGAAGTTTATGGACAACTCTAAAAAGAAAATTACAGTGGAAAACTTCTTGGATTATCTTGCGGAGCAAAAGTCAGTCTCTGGAAAGGAAAACCTTGGTGTACGAATACAAAGCTTGAGGTTGCATATTTCCTTTCTCCGGCAGGCCAGGAGAACTGAAGTGTCTGCTGTTAAAGTTCAAGGCAACACCAGTGGCTCAGGTGATGGTAGTTGTGAGAAGGATTTGGTGAAAAATAGAAAATTTCATTTGAGCAAACAGGCATTGGATGAGAGGTTCAGTGCTATAACTAGTCGTATAAAGAAATTACCAGGTATCAATAAGCACATCCATTTTGATTCAACCGATGATGAAACTGATGGTGATTCTAGTTCTGAGGGTGATGCAGTTGATAACAGTGAGAGTAAAACTGGTTCTGCTGCTATTGATAACAAGGATGTTGATAAGCGTGTTAGTAGCTGTCCATATCCTTCAAAAACAGAAGAAATGGAGCGTCTTGGCTTAAAGTCTGAAACGAGTAAAAAACCACCTTTGGATAGTAGCAAGGTAAAAGAGAGTAGTAAAAAGGGTTATACGAGAGAAAAAAGGAAATCTGAAGAGAATGGGAGCCCCACCTCTTCATGCAAACGGCCCAAGAAGAAGCAAAAGGTTCAAATGCAAAAGCATGAGTTATCACCTAATTGTTTCTTGAGTATAGGTAAGTTGGAGAAATTCATAACGACCTGGAAGGAAGCATGCCGTGAACATCCAGTTCAACAGGTTTTAGAGTTGCTAGCAAATTACTATGCGGAAACACCAAAGGAGAAGAAGAAAATAATAAAGTTTTTCTCCGAGTACCCTGGCATTGGCTTCCTAAATGTTGCCGTTAGAGCGATGGGATGTGGTCTGCTGGATAGTCTTTATGATGCGATCAATGTCTTTAATGAGAATAAATCATCATCAAATATTCCTGATACCACCACTGAGCTTATGGAAGTGGAGCC]
[+] EMBL AK063484 [GCTGGCTCCTTCTTCCGCCGCACGCTACCCCTCCTCCCCGACCCCGCCGCCCCGATGAGCGGCCGCGACAACCACCAATGGCCGCCGCCGCACCGAGGCTACGACCCCCGGGACCCCGCCGCCGCGTGGCAGGGCGACGCCTCGACCTCCGCCGCCGCCGCGGCGGCGGCCGCGGGGGTAAACCCCTACATCTACGTCCCCAACCCCCAGTACGCCCCCAACCCTCTCAATCTCGTCCTCAATCATGTGCTCCACAACCCCGCCGCCCTCGCCGCCTACCATCACCAGCAGCAGCAACAGTACCACCACCACCAGCAACTCCTCCATTCATCTGCGTACCACCAAAACCCTACCCATAATCTCCAGCACCGCGCTGCCGTCCCTGCACCAGCAGCACCGGCGGCCGCCCCTAGCATCCAGCACCGCCCTGTCGCCCCCGCGACAGCCGCGGCCGCGCCGGGGCAGCCTCAGCCGAAGAAGAAGAAGAAACAGAAGGAGCCGGCTCCGCAGGCGCATCCCCCGCCACCCCTGCCCCCACCGCAGCAGCAGCAGCAGCAGCCAAAGCCGCAGCAGCAGCCGGGGGCTCTTGAGAGGGCGCAGGCGGCGGCGAGGAAGGTGCGGGACGAGATCATTAAGGCTGGTGAGGGCGTTACAGGGTGGAAGATAGCGCAGGCGGTGCTGGTGGCGCTCAAAGTGGATTCCTGGGGCTCTCTTGGTGTCCAGCTCCATGAAGTACCCCTCCTGCGCGACCTCTTCCTCGTCGAGGGCAAGGTGAATACATTCATCCATTGCTATGTTGCAGCAAGGAAAATTGTTTCAGTTTATGATTTAGAGTCTGAGATATGCAAAAATGAGAGCATTGGACAGTTTGAAGAGTTGGGGTTGGGGCCTTTTCTTCAGCATCCACTTGTTGCACATTATTTTTCAGTACCTGCCGATTTGTCCTTGGTACCTAAGCTTAGTAGTGACGAGATTATAAATTGGCTTCAGAAGTTTATGGACAACTCTAAAAAGAAAATTACAGTGGAAAACTTCTTGGATTATCTTGCGGAGCAAAAGTCAGTCTCTGGAAAGGAAAACCTTGGTGTACGAATACAAAGCTTGAGGTTGCATATTTCCTTTCTCCGGCAGGCCAGGAGAACTGAAGTGTCTGCTGTTAAAGTTCAAGGCAACACCAGTGGCTCAGGTGATGGTAGTTGTGAGAAGGATTTGGTGAAAAATAGAAAATTTCATTTGAGCAAACAGGCATTGGATGAGAGGTTCAGTGCTATAACTAGTCGTATAAAGAAATTACCAGGTATCAATAAGCACATCCATTTTGATTCAACCGATGATGAAACTGATGGTGATTCTAGTTCTGAGGGTGATGCAGTTGATAACAGTGAGAGTAAAACTGGTTCTGCTGCTATTGATAACAAGGATGTTGATAAGCGTGTTAGTAGCTGTCCATATCCTTCAAAAACAGAAGAAATGGAGCGTCTTGGCTTAAAGTCTGAAACGAGTAAAAAACCACCTTTGGATAGTAGCAAGGTAAAAGAGAGTAGTAAAAAGGGTTATACGAGAGAAAAAAGGAAATCTGAAGAGAATGGGAGCCCCACCTCTTCATGCAAACGGCCCAAGAAGAAGCAAAAGGTTCAAATGCAAAAGCATGAGTTATCACCTAATTGTTTCTTGAGTATAGGTAAGTTGGAGAAATTCATAACGACCTGGAAGGAAGCATGCCGTGAACATCCAGTTCAACAGGTTTTAGAGTTGCTAGCAAATTACTATGCGGAAACACCAAAGGAGAAGAAGAAAATAATAAAGTTTTTCTCCGAGTACCCTGGCATTGGCTTCCTAAATGTTGCCGTTAGAGCGATGGGATGTGGTCTGCTGGATAGTCTTTATGATGCGATCAATGTCTTTAATGAGAATAAATCATCATCAAATATTCCTGATACCACCACTGAGCTTATGGAAGTGGAGCC]
consensusID : consensus_933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GTTTTCTTTCTGTAATTGTTAACCTGAATGATGCCAATATTTGTTTGAAACAAACAGGCACCATAATTATGTAGCTCTATGTACTGATATACAAGTTTCTTTCGATTTATTTGTGATATTTGTCATACTTGTTTGATGGTTTGGTCGTACAATGTACTTCATTTCATTACTTATTTGAAAACACATCATTGATTGTTTAGAAAGAGGTAAGTGTGTTTAGTCTAGACATTTCCAATTTCTAAACTAAATTGTCTTGCATTTCACCATGAAGGTTTTAGAGTTGCTAGCAAATTACTATGCGGAAACACCAAAGGAGAAGAAGAAAATAATAAAGTTTTTCTCCGAGTACCCTGGCATTGGCTTCCTAAATGTTGCCG]
[+] EMBL CF306568 [GTTTTCTTTCTGTAATTGTTAACCTGAATGATGCCAATATTTGTTTGAAACAAACAGGCACCATAATTATGTAGCTCTATGTACTGATATACAAGTTTCTTTCGATTTATTTGTGATATTTGTCATACTTGTTTGATGGTTTGGTCGTACAATGTACTTCATTTCATTACTTATTTGAAAACACATCATTGATTGTTTAGAAAGAGGTAAGTGTGTTTAGTCTAGACATTTCCAATTTCTAAACTAAATTGTCTTGCATTTCACCATGAAGGTTTTAGAGTTGCTAGCAAATTACTATGCGGAAACACCAAAGGAGAAGAAGAAAATAATAAAGTTTTTCTCCGAGTACCCTGGCATTGGCTTCCTAAATGTTGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_933#0 GCTGGCTCCTTCTTCCGCCGCACGCTACCCCTCCTCCCCGACCCCGCCGCCCCGATGAGC 60
consensus_933#1 ------------------------------------------------------------
consensus_933#0 GGCCGCGACAACCACCAATGGCCGCCGCCGCACCGAGGCTACGACCCCCGGGACCCCGCC 120
consensus_933#1 ------------------------------------------------------------
consensus_933#0 GCCGCGTGGCAGGGCGACGCCTCGACCTCCGCCGCCGCCGCGGCGGCGGCCGCGGGGGTA 180
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AACCCCTACATCTACGTCCCCAACCCCCAGTACGCCCCCAACCCTCTCAATCTCGTCCTC 240
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AATCATGTGCTCCACAACCCCGCCGCCCTCGCCGCCTACCATCACCAGCAGCAGCAACAG 300
consensus_933#1 ------------------------------------------------------------
consensus_933#0 TACCACCACCACCAGCAACTCCTCCATTCATCTGCGTACCACCAAAACCCTACCCATAAT 360
consensus_933#1 ------------------------------------------------------------
consensus_933#0 CTCCAGCACCGCGCTGCCGTCCCTGCACCAGCAGCACCGGCGGCCGCCCCTAGCATCCAG 420
consensus_933#1 ------------------------------------------------------------
consensus_933#0 CACCGCCCTGTCGCCCCCGCGACAGCCGCGGCCGCGCCGGGGCAGCCTCAGCCGAAGAAG 480
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AAGAAGAAACAGAAGGAGCCGGCTCCGCAGGCGCATCCCCCGCCACCCCTGCCCCCACCG 540
consensus_933#1 ------------------------------------------------------------
consensus_933#0 CAGCAGCAGCAGCAGCAGCCAAAGCCGCAGCAGCAGCCGGGGGCTCTTGAGAGGGCGCAG 600
consensus_933#1 ------------------------------------------------------------
consensus_933#0 GCGGCGGCGAGGAAGGTGCGGGACGAGATCATTAAGGCTGGTGAGGGCGTTACAGGGTGG 660
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AAGATAGCGCAGGCGGTGCTGGTGGCGCTCAAAGTGGATTCCTGGGGCTCTCTTGGTGTC 720
consensus_933#1 ------------------------------------------------------------
consensus_933#0 CAGCTCCATGAAGTACCCCTCCTGCGCGACCTCTTCCTCGTCGAGGGCAAGGTGAATACA 780
consensus_933#1 ------------------------------------------------------------
consensus_933#0 TTCATCCATTGCTATGTTGCAGCAAGGAAAATTGTTTCAGTTTATGATTTAGAGTCTGAG 840
consensus_933#1 ------------------------------------------------------------
consensus_933#0 ATATGCAAAAATGAGAGCATTGGACAGTTTGAAGAGTTGGGGTTGGGGCCTTTTCTTCAG 900
consensus_933#1 ------------------------------------------------------------
consensus_933#0 CATCCACTTGTTGCACATTATTTTTCAGTACCTGCCGATTTGTCCTTGGTACCTAAGCTT 960
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AGTAGTGACGAGATTATAAATTGGCTTCAGAAGTTTATGGACAACTCTAAAAAGAAAATT 1020
consensus_933#1 ------------------------------------------------------------
consensus_933#0 ACAGTGGAAAACTTCTTGGATTATCTTGCGGAGCAAAAGTCAGTCTCTGGAAAGGAAAAC 1080
consensus_933#1 ------------------------------------------------------------
consensus_933#0 CTTGGTGTACGAATACAAAGCTTGAGGTTGCATATTTCCTTTCTCCGGCAGGCCAGGAGA 1140
consensus_933#1 ------------------------------------------------------------
consensus_933#0 ACTGAAGTGTCTGCTGTTAAAGTTCAAGGCAACACCAGTGGCTCAGGTGATGGTAGTTGT 1200
consensus_933#1 ------------------------------------------------------------
consensus_933#0 GAGAAGGATTTGGTGAAAAATAGAAAATTTCATTTGAGCAAACAGGCATTGGATGAGAGG 1260
consensus_933#1 ------------------------------------------------------------
consensus_933#0 TTCAGTGCTATAACTAGTCGTATAAAGAAATTACCAGGTATCAATAAGCACATCCATTTT 1320
consensus_933#1 ------------------------------------------------------------
consensus_933#0 GATTCAACCGATGATGAAACTGATGGTGATTCTAGTTCTGAGGGTGATGCAGTTGATAAC 1380
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AGTGAGAGTAAAACTGGTTCTGCTGCTATTGATAACAAGGATGTTGATAAGCGTGTTAGT 1440
consensus_933#1 ------------------------------------------------------------
consensus_933#0 AGCTGTCCATATCCTTCAAAAACAGAAGAAATGGAGCGTCTTGGCTTAAAGTCTGAAACG 1500
consensus_933#1 -------GTTTTCTTTCTGTAATTGTTAACCTGAATGATGCCAATATTT-GTTTGAAAC- 51
* ** *** ** * * ** * * * ** ******
consensus_933#0 AGTAAAAAACCACCTTTGGATAGTAGCAAGGTAAAAGAGAGTAGTAAAAAGGGTTATACG 1560
consensus_933#1 ---AAACAGGCACC-----ATAATTATGTAGCTCTATGTACTGATATACAAGTTTCTTTC 103
*** * **** *** * * * * * ** * * * ** *
consensus_933#0 AGAGAAAAAAGGAAATCTGAAGAGAATGGGAGCCCCACCTCTTCATGCAAACGGCCCAAG 1620
consensus_933#1 GATTTATTTGTGATATTTGTC-ATACTTGTTTGATGGTTTGGTCGTACAATGTACTTCAT 162
* ** ** ** * * * * * ** * *** * *
consensus_933#0 AAGAAGCAAAAGGTTCAAATGCAAAAGCATGAGTTATCACCTAATTGTTTCTTGAGTATA 1680
consensus_933#1 ------TTCATTACTTATTTGAAAACACATCATTGATTGTTTAGA-AAGAGGTAAGTGTG 215
* * * ** *** *** * * ** ** * *** *
consensus_933#0 GGTAAGTTGGAGAAATTCATAACGACCTGGAAGGAAGCATGCCGTGAACATCCAGTTCAA 1740
consensus_933#1 TTTAGTCTAGACATTTCCA-----ATTTCTAAACTAAATTGTCTTG--CATTTCACCATG 268
** * ** * * ** * * ** * ** * ** ***
consensus_933#0 CAGGTTTTAGAGTTGCTAGCAAATTACTATGCGGAAACACCAAAGGAGAAGAAGAAAATA 1800
consensus_933#1 AAGGTTTTAGAGTTGCTAGCAAATTACTATGCGGAAACACCAAAGGAGAAGAAGAAAATA 328
***********************************************************
consensus_933#0 ATAAAGTTTTTCTCCGAGTACCCTGGCATTGGCTTCCTAAATGTTGCCGTTAGAGCGATG 1860
consensus_933#1 ATAAAGTTTTTCTCCGAGTACCCTGGCATTGGCTTCCTAAATGTTGCCG----------- 377
*************************************************
consensus_933#0 GGATGTGGTCTGCTGGATAGTCTTTATGATGCGATCAATGTCTTTAATGAGAATAAATCA 1920
consensus_933#1 ------------------------------------------------------------
consensus_933#0 TCATCAAATATTCCTGATACCACCACTGAGCTTATGGAAGTGGAGCC 1967
consensus_933#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||