cluster # 9333

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Oryza sativa
cluster # 9333 cluster # 9333 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9333#0 length = 665 sequences # 4

consensus_9333#1 length = 384 sequences # 2

consensusID : consensus_9333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 665
fasta sequence

                              [TTTTTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGCAGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCAAAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGTCG-GCTCCTCCTCCTCCTCGTCTG-ATACTCGTCGCGGGTCTCATCATCATCCTTGGGGGGTGCAGTGGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAAAATTATAAGCGCTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTGAGCTGGGCTTGTTGGG]

[-] EMBL BI795350             [TTTTTTTTGAAGAAACAAGGGTCAGAGAGTCCTTCAATTCAAGAACGTC TTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTG TTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGCAGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCAAAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGTCG GCTCCTCCTCCTCCTCGTCTG ATACTCGTCGCGGGTCTCATCATCATCCTTGGGGGGTGCAGTG                                                                                                                                ]
[-] EMBL AU085776             [   TTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGNAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGT                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB673775             [                 ATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGCAGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCAAAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACA GGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAAAATTATAAGCGCTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTGAGCTGGGCTTGTTGGG]
[+] EMBL AI978341             [                                        AAGAACGTCTTTGACATATGTCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTTTAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTTTTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACATCTCNANGATTTNNNNCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGNCTCTATGCCCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTNTGATATGCTCGNCTCGAGCAGGTGTGATCTT                                                                                                                                                                                                                                                                                                       ]




>consensus_9333#0
TTTTTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATG
TCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTT
TAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTT
TTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACAT
CTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCTGCTTGTTTGTGCTTGTCTCTATGC
CCTTGCCCTCTTGTTGCCGCAATCTGGGCACTTGTAGTGTTTGATATGCTCGGCTCGAGC
AGGTGTGATCTTCACGCACTTTCCATGGTACCACCGCTCGCAACTATCACAACAGATCCA
AAACTCATCTTTGCCATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGTCGGCTCCTC
CTCCTCCTCGTCTGATACTCGTCGCGGGTCTCATCATCATCCTTGGGGGGTGCAGTGGGT
TTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAAAATTATAAGCG
CTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTGAGCTGGGCTTG
TTGGG

consensusID : consensus_9333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 384
fasta sequence

                              [TAACGATTGCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTATGCCCTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCTCGAAGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAACAAGATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTTGTTGGGCTTGTTGGTACTGTTGGG]

[-] EMBL AU063111             [TAACGATTGCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTATGCCCTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCTCGAAGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAACAAGATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTTGTTGGGCTTGTTGGTACTGTTGGG]
[-] EMBL AI978340             [                                                                                                   tgttnnntATGCTCGGCT NNNNNAGGTGTGATCTTCACGNNNTNNCCATGGTA CCACCGCTCGCAACTATCACAAC AGATCCAAAACTCATCTTTG CCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCGCTCCTCCTCCTCCTCGTCTGCATACTCGTCGCCGCTCTCATCATCATCCTTGGGGGGTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTTGTTGGGC                 ]




>consensus_9333#1
TAACGATTGCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTATGCC
CTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCTCGA
AGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAACAAG
ATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGGTGTTGTCGCG
CTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGGGTGC
AGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGGGCTT
GTTGGGCTTGTTGGTACTGTTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9333#0      TTTTTTTTGAAGAAACAATGGTCAGAGAGTCCTTCAATTCAAGAACGTCTTTGACATATG 60
consensus_9333#1      ------------------------------------------------------------
                                                                                  

consensus_9333#0      TCTGCAGAGGCAGCCGCACCAGGGAAATGAAGCTAATATTACTACAGCGACCAAGAGTTT 120
consensus_9333#1      ------------------------------------------------------------
                                                                                  

consensus_9333#0      TAAGCACAATTAAAGTCAGAGCAACACGAACAGCTGGGGCACGATTAAATTAACAGTGTT 180
consensus_9333#1      ------------------------------------------------------------
                                                                                  

consensus_9333#0      TTGATTTGAAATGGAAAACCAAGTCTACGGGCTACAAAGCTAGGCCATATCTGCAGACAT 240
consensus_9333#1      ------------------------------------------------------------
                                                                                  

consensus_9333#0      CTCAACGATTTGGCGCTGGTTTCCGTTCCGACTGCT-GCTTGTTTGTGCTTGTCTCT-AT 298
consensus_9333#1      --TAACGATT-GCCGCTGGTTTCCGTTCCGACTGCTTGCTTGTTTGTGCTTGTCTCTTAT 57
                         ******* * *********************** ******************** **

consensus_9333#0      GCCCTTGCCCTCTTGTTGCCGCAATCTGGGCA-CTTGTA-GTGTTTGATA-TGCTCGGCT 355
consensus_9333#1      GCCCTTGCCCTCTTGTTGCCGAAATCTGGGCAACTTGTAAGTGTTTGATAATGCTCGGCT 117
                      ********************* ********** ****** ********** *********

consensus_9333#0      CGA-GCAGGTGTGATCTTCACGCACTTTCCATGGTACC-ACCGCTCGCAACTATCACAAC 413
consensus_9333#1      CGAAGCAGGTGTGATCTTAACGCACTTTCCATGGTACCCACCGCTCGCAACTATCACAAC 177
                      *** ************** ******************* *********************

consensus_9333#0      A-GATCCAAAACTCATCTTTGCC-ATCATTTGTTCCACAAGATCCGCACAGGGGTGTTGT 471
consensus_9333#1      AAGATCCAAAACTCATCTTTGCCCATCATTTGTTCCACAAGATCCGCACAGGG-TGTTGT 236
                      * ********************* ***************************** ******

consensus_9333#0      CG-GCTCCTCCTCCTCCTCGTCTG-ATACTCGTCGCGGGTCTCATCATCATCCTTGGGGG 529
consensus_9333#1      CGCGCTCCTCCTCCTCCTCGTCTGCATACTCATCGCCGCTCTCATCATCATCCTTGGGGG 296
                      ** ********************* ****** **** * *********************

consensus_9333#0      GTGCAGTGGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCTACAAACAGAGAA 589
consensus_9333#1      GTGCAGGTGGTTTTGGAGCCTTTGAATGAGACTCTGGTCTTGGTTGCATTTTTGAGCTGG 356
                      ******  ***************************************       **    

consensus_9333#0      AATTATAAGCGCTGTGCTGCACCGCAGGCAGCAAAAGAGTATATGAAGATACCATTTTTG 649
consensus_9333#1      GCTTGTTGGGCTTGT-TGGTACTGTTGGG------------------------------- 384
                        ** *  *   ***   * ** *  **                                

consensus_9333#0      AGCTGGGCTTGTTGGG 665
consensus_9333#1      ----------------