|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1003 fasta sequence
[GAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGATCTTCTCTAAGGTTTTTTTTTTTTTTTTTCGTGTATCTTGCTTGCAAATTGTGTCACTTTTTCCCTAAAACAGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTGAAGTGATAAAATAAAAATGCATCCTCATATTCACTGTACTCCTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTATGTAATCATGTTTGTGAACACTCCAAATATTAACAAGCACTGTTTTGGCTTCAGTAACTGTTGCATTTCCGTTACACATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCNNNANAAAAAAAAAAAAAAAAAAAAAAAAANAANANAANNNANNNNNNNNNAAAANANAAAAAANAAAANNAAACCAAAAANAAAANAAAAAAANNNNCCNAAAANNNACANNAAAAACCGGGGGGGGGGGAAGAGAACCCCGGNNGCCCCAAAAGGGGGAGAGAAAACGCGCCCCCCCGCCCCGCGCNGCCCAAAGGGGGGGGGAGGAGAAACCCGGGGGGCCCCCCCAACCAAAGCCCGGACAAAAAAACCCCTGTNACGGGGCGGGAAAAAAAAAAAAAGCACCGCGGGGGGGCGGTCCAAACANGGGGCGCCCAGAATGGG]
[-] EMBL CB685720 [GAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGATCTTCTCTAAGGTTTTTTTTTTTTTTTTTCGTGTATCTTGCTTGCAAATTGTGTCACTTTTTCCCTAAAACAGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTGAAGTGATAAAATAAAAATGCATCCTCATATTCACTGTACTCCTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTATGTAATCATGTTTGTGAACACTCCAAATATTAACAAGCACTGTTTTGGCTTCAGTAACTGTTGCATTTCCGTTACACATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAAAGGGTTGCGAAAATTGAAAATAGGTGTATATGTTTT ]
[+] EMBL CB685719 [ agcccttGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGATCTTCTCTAAGGTTTTTTTTTTTTTTTTTCGTGTATCTTGCTTGCAAATTGTGTCACTTTTTCCCTAAAACAGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTGAAGTGATAAAATAAAAATGCATCCTCATATTCACTGTACTCCTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTATGTAATCATGTTTGTGAACACTCCAAATATTAACAAGCACTGTTTTGGCTTCAGTAACTGTTGCATTTCCGTTACACATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTA ]
[+] EMBL CA754919 [ GATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAANATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCNNNANAAAAAAAAAAAAAAAAAAAAAAAAANAANANAANNNANNNNNNNNNAAAANANAAAAAANAAAANNAAACCAAAAANAAAANAAAAAAANNNNCCNAAAANNNACANNAAAAACCGGGGGGGGGGGAAGAGAACCCCGGNNGCCCCAAAAGGGGGAGAGAAAACGCGCCCCCCCGCCCCGCGCNGCCCAAAGGGGGGGGGAGGAGAAACCCGGGGGGCCCCCCCAACCAAAGCCCGGACAAAAAAACCCCTGTNACGGGGCGGGAAAAAAAAAAAAAGCACCGCGGGGGGGCGGTCCAAACANGGGGCGCCCAGAATGGG]
consensusID : consensus_9334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 944 fasta sequence
[CTCGTCTTCTTCCTTCCGCTCGCTCGCTCGCTCGCTGACGTGTACGCTTCGCGGCGGAGGCGGCGGCGGCGGCTTCCGATGGCGGAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTGGGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTCAAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGAATTCATGAAGGTTAATCCTATGAAGTTCGTCCCGGCATTGGTCGATGGAGATGCTGTAATTGGTGATTCTTACGCGATAGCATTATATTTGGAGGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGGTAAGAACTGATTTGCATTCAATTTCTTACTGCCATAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCAAATAAATGACCCTTAAA]
[+] EMBL AK073086 [CTCGTCTTCTTCCTTCCGCTCGCTCGCTCGCTCGCTGACGTGTACGCTTCGCGGCGGAGGCGGCGGCGGCGGCTTCCGATGGCGGAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTGGGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTCAAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGAATTCATGAAGGTTAATCCTATGAAGTTCGTCCCGGCATTGGTCGATGGAGATGCTGTAATTGGTGATTCTTACGCGATAGCATTATATTTGGAGGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGGTAAGAACTGATTTGCATTCAATTTCTTACTGCCATAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAGCTTCTGTCCAAATAAATGACCCTTAAA]
consensusID : consensus_9334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCAT-CGCCCTCAACCTC-AAAGGATT-GGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGTATTTGGAGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAAAAAAAAAAAAA]
[+] EMBL OSA486976 [GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCAT CGCCCTCAACCTC AAAGGATT GGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAGTATTTGGAGACAAGTACCCTGAGCACCCTCTTTTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCAAAAAAAA ]
[+] EMBL AT003391 [ gGCATNGGCCCTCANCCTCAAAAGGATTGGGAGTNCGAGTNCAAGCCGGTGANCCTGCTCAAGGGGGAGCCCTCTGATCCAGTATTTGGAGNCAAGTACCNTGAGCACCCTCTTTTACCTCAAGCCCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTCCCGTACTGAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGAAGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCCCCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCCCTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACCCAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAGGTGTATATGTTTTTCCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9334#1 CTCGTCTTCTTCCTTCCGCTCGCTCGCTCGCTCGCTGACGTGTACGCTTCGCGGCGGAGG 60
consensus_9334#2 ------------------------------------------------------------
consensus_9334#0 ------------------------------------------------------------
consensus_9334#1 CGGCGGCGGCGGCTTCCGATGGCGGAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTG 120
consensus_9334#2 ------------------------------------------------------------
consensus_9334#0 ------------------------------------------------------------
consensus_9334#1 GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTC 180
consensus_9334#2 GGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTC 60
consensus_9334#0 -----GAGAACCTAGTAA--AAGGCTGTGCTGGGAA-GTATGCAACAGGAGATGAAGTCC 52
* * ** * ** ***** * * * * * * * ** *
consensus_9334#1 AAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCA 240
consensus_9334#2 AAAGGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCA 120
consensus_9334#0 GATTGGTGTGTATGCTGCCCTAACAATTTTATCCTTTCTTGTATGGAGA--TCTTCTCTA 110
* * * * * * ** * * *** **** *** ** *
consensus_9334#1 GAATTCATGAAGGTTAATCCTATGAAGTTCGTCCCGGCATTGGTCGATGGAGATGCTGTA 300
consensus_9334#2 G----------------------------------------------------------- 121
consensus_9334#0 AGGTTTTTTTTTTTTTTTTTCGTG------------------------------------ 134
consensus_9334#1 ATTGGTGATTCTTACGCGATAGCATTATATTTGGAGGACAAGTACCCTGAGCACCCTCTT 360
consensus_9334#2 ---------------------------TATTTGGAG-ACAAGTACCCTGAGCACCCTCTT 153
consensus_9334#0 ---------------------------TATCTTGCTTGCAAAT----TGTGT---CACTT 160
*** * * *** * ** * * ***
consensus_9334#1 TTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCT 420
consensus_9334#2 TTACCTCAAGACCTTAAAATGAAGGCCTTGAATCTCCAGATAGCAAGCATTGTATGCTCT 213
consensus_9334#0 TTTCCCTAAAAC---AGAGTGAAGTTCTCCCATGTGAAAAAAGAAAAAACTG-AAGTGAT 216
** ** ** ** * * ***** ** ** * * * ** ** * ** * * *
consensus_9334#1 GGAATTCAACCTCTTCACAATCTT-ACCGTACTGGTAAGAACTGATTTGCATTCAATTTC 479
consensus_9334#2 GGAATTCAACCTCTTCACAATCTT-ACCGTACTG-------------------------- 246
consensus_9334#0 AAAATAAAAATGCATCCTCATATTCACTGTACTC-------------------------- 250
*** ** * ** ** ** ** *****
consensus_9334#1 TTACTGCCATAGGTTCATTGAGAAGA-AGGTTGGTACAGGGGAGAGCATCCCATGGACTC 538
consensus_9334#2 ----------AGGTTCATTGAGAAGA-AGGTTGGTACAGGGGAGAGCATCCCATGGACTC 295
consensus_9334#0 -------------CTCATGAGAACCATAGATTGCCATTTACTAACTTTCCCTTTGTTTAT 297
**** * * ** *** * * ** **
consensus_9334#1 AACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGA 598
consensus_9334#2 AACAACAGATCGACAGAGGTTTCGCAGCTGCTGAGAACCTAGTAAAAGGCTGTGCTGGGA 355
consensus_9334#0 GTAATCATGTTTGTGAACACTCC--AAATATTAACAAGCACTGTTTTGGCT---TCAGTA 352
* ** * * * * * * * * ** * **** * *
consensus_9334#1 AGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATG 658
consensus_9334#2 AGTATGCAACAGGAGATGAAGTCCGATTGGCAGACGTATTCCTCGCACCTCAGATTTATG 415
consensus_9334#0 ACTGTTGCATTTCCGTTACA--CATGCAGGCAGACGTATTCCTCGCACCTCAGATTTATG 410
* * * * * * * * ********************************
consensus_9334#1 CAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATG 718
consensus_9334#2 CAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATG 475
consensus_9334#0 CAGCAGTGACTCGTTTTCAAATTAACATGTTAAATTATCCCACTCTCGCGAGGCTCCATG 470
************************************************************
consensus_9334#1 AGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCC 778
consensus_9334#2 AGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCC 535
consensus_9334#0 AGGAGTATATGAAACATCCAGCATTTCAAGCAGCACTCCCAGACAGACAACCAGATGCCC 530
************************************************************
consensus_9334#1 CTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACC 838
consensus_9334#2 CTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACC 595
consensus_9334#0 CTTCCTCTACCTAGAAAATACAGTGTATGTTCATCTGAAAAATAGATTAAAAGTTGTACC 590
************************************************************
consensus_9334#1 CAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAG 898
consensus_9334#2 CAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAG 655
consensus_9334#0 CAACTTATCATTGGAAGCTGTAACAATAAGCACAGAACTTGTTGCGAAAATTGAAAATAG 650
************************************************************
consensus_9334#1 GTGTATATGTTTTTCAAAGCTTCTGTCCAAATAAATGACCCTTAAA-------------- 944
consensus_9334#2 GTGTATATGTTTTTCAAAA-----AAAAAAAAAAA------------------------- 685
consensus_9334#0 GTGTATATGTTTTTCAAAGCTTCTGTCCNNNANAAAAAAAAAAAAAAAAAAAAAAAAANA 710
****************** **
consensus_9334#1 ------------------------------------------------------------
consensus_9334#2 ------------------------------------------------------------
consensus_9334#0 ANANAANNNANNNNNNNNNAAAANANAAAAAANAAAANNAAACCAAAAANAAAANAAAAA 770
consensus_9334#1 ------------------------------------------------------------
consensus_9334#2 ------------------------------------------------------------
consensus_9334#0 AANNNNCCNAAAANNNACANNAAAAACCGGGGGGGGGGGAAGAGAACCCCGGNNGCCCCA 830
consensus_9334#1 ------------------------------------------------------------
consensus_9334#2 ------------------------------------------------------------
consensus_9334#0 AAAGGGGGAGAGAAAACGCGCCCCCCCGCCCCGCGCNGCCCAAAGGGGGGGGGAGGAGAA 890
consensus_9334#1 ------------------------------------------------------------
consensus_9334#2 ------------------------------------------------------------
consensus_9334#0 ACCCGGGGGGCCCCCCCAACCAAAGCCCGGACAAAAAAACCCCTGTNACGGGGCGGGAAA 950
consensus_9334#1 -----------------------------------------------------
consensus_9334#2 -----------------------------------------------------
consensus_9334#0 AAAAAAAAAAGCACCGCGGGGGGGCGGTCCAAACANGGGGCGCCCAGAATGGG 1003
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||