cluster # 9336

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Oryza sativa
cluster # 9336 cluster # 9336 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9336#0 length = 956 sequences # 4

consensus_9336#1 length = 367 sequences # 2

consensusID : consensus_9336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 956
fasta sequence

                              [CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAAAGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTCGTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCCGGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCGGGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCTAGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGATACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCCGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG-TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG]

[+] EMBL AK102949             [CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAAAGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTCGTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCCGGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCGGGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCTAGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGATACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCCGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG]
[+] EMBL AK101633             [CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAAAGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTCGTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCCGGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCGGGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCTAGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGATACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCCGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG TAGTACCTTCTACTACGATGG                                   ]
[+] EMBL AU091676             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGA CGGCAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGC GTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTTAGTACCTTCTACTACGATGGTTCATGCCCCAAAanaa                  ]
[+] EMBL AU069052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCAAACTGGAGCAAGCGCGGGAG TTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAAa               ]




>consensus_9336#0
CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAA
AGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTC
GTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCC
GGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCG
GGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCT
AGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGT
GGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGA
TACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGC
CGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTAT
AATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGAT
TATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGC
GGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCC
TCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCT
AAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTAC
GAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG
TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG

consensusID : consensus_9336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 367
fasta sequence

                              [TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGGCGGCAAGACNCAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTACTACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029256             [TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGGCGGCAAGACNCAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTACTACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU062954             [      TGCAAACTGGAGCAAGCGCGGGAGCTT CCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTACTACGATGGNTCATGCCCCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAA               ]




>consensus_9336#1
TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGGCGGCAAGACNCAGC
AGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTCCTCCTCTGGCCATG
AGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCCTAAGATATATATAG
TGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTACGAGCTTCAATTTG
AGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTAC
TACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9336#0      CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAA 60
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      AGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTC 120
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      GTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCC 180
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      GGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCG 240
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      GGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCT 300
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      AGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGT 360
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      GGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGA 420
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      TACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGC 480
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      CGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTAT 540
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      AATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGAT 600
consensus_9336#1      ------------------------------------------------------------
                                                                                  

consensus_9336#0      TATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCC-GCGGCGGCGG 659
consensus_9336#1      --------------TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGG 46
                                    * ********** ********** ********* * **********

consensus_9336#0      CGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTC 719
consensus_9336#1      CGGCAAGACNCAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTC 106
                      ********* ********************************** ***************

consensus_9336#0      CTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCC 779
consensus_9336#1      CTCCTCTGGCCATGAGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCC 166
                      ************************** ************* *******************

consensus_9336#0      TAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTA 839
consensus_9336#1      TAAGATATATATAGTGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTA 226
                      ************************************* ************** *******

consensus_9336#0      CGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTG 899
consensus_9336#1      CGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTG 286
                      ************************************************************

consensus_9336#0      GTAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG--- 956
consensus_9336#1      GTAGTACCTTCTACTACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 346
                      ***********************************    ** * *  *    *       

consensus_9336#0      ---------------------
consensus_9336#1      AAAAAAAAAAAAAAAAAAAAA 367