These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 956 fasta sequence [CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAAAGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTCGTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCCGGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCGGGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCTAGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGATACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCCGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG-TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG] [+] EMBL AK102949 [CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAAAGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTCGTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCCGGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCGGGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCTAGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGATACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCCGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG] [+] EMBL AK101633 [CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAAAGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTCGTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCCGGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCGGGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCTAGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGATACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCCGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG TAGTACCTTCTACTACGATGG ] [+] EMBL AU091676 [ TGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTATAATGGGGAACCTGGAGGGGGTGGTGGCGGA CGGCAGAAGGTGGTGGATATGGCGGGGATTATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGC GTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTTAGTACCTTCTACTACGATGGTTCATGCCCCAAAanaa ] [+] EMBL AU069052 [ TGCAAACTGGAGCAAGCGCGGGAG TTCCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGG TAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAAa ] consensusID : consensus_9336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 367 fasta sequence [TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGGCGGCAAGACNCAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTACTACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029256 [TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGGCGGCAAGACNCAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTACTACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU062954 [ TGCAAACTGGAGCAAGCGCGGGAGCTT CCGCGGCGGCGGCGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTCCTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCCTAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTACGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTGGTAGTACCTTCTACTACGATGGNTCATGCCCCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9336#0 CACAAGTACGCAGAGCCAAGAAACAGAGCAAGAGTGAGTGAGAGAGAGCTTGCAATGGAA 60 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 AGAAGCGGTGAGCGGCGGCGAGAGAGGGTGGTGGCGGCGGCTCTTGCGGTGCTCCTCCTC 120 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 GTCTTCGCGTCCGCGTTCGTGCGGTGCAGGGGCGACGCCGACGGCGAGGGGGACGGCGCC 180 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 GGCGCGGCCGAGCCGGGAAAGACGGGGCCGCCGCTGCCGCCCGGGTGGAAGGGCGGCTCG 240 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 GGGTCCGGCCAGGGGTCCAGCCCCGACGGTGCTTGGAGGTATGGCTGGGGCTGGGCCGCT 300 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 AGCCCTGGCGGCAAGGGCTCCGGGTTCGGGTTTGGGTACGGTGGCAGCAGAGGCGAAGGT 360 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 GGCGGCGGCGGTGGCGGCGGCGGCGGAGGAAGCGGTCGAGCATATGGTTTCGGTGGAGGA 420 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 TACGGTGGCCACCCCGGAGGCTTTGGAGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGC 480 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 CGCAACTATGGTGGCGGCAGCGGCGGCATTGGAGGATATGGCAACTATGGTGGTGGCTAT 540 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 AATGGGGAACCTGGAGGGGGTGGTGGCGGAGCCGGAGAAGGTGGTGGATATGGCGGGGAT 600 consensus_9336#1 ------------------------------------------------------------ consensus_9336#0 TATGGCGGCGGCGATGTCGGTGCAAACTGGAGCAAGCGCGGGAGCTTCC-GCGGCGGCGG 659 consensus_9336#1 --------------TNTCGGTGCAAANTGGAGCAAGCNCGGGAGCTTNCCGCGGCGGCGG 46 * ********** ********** ********* * ********** consensus_9336#0 CGGCAAGACACAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCGCCCGTCCTCGTCTTC 719 consensus_9336#1 CGGCAAGACNCAGCAGAAGGACGGTGGCGGTAACAACTGAAGCCNCCCGTCCTCGTCTTC 106 ********* ********************************** *************** consensus_9336#0 CTCCTCTGGCCATGAGACGAACCATGAGCTTCATAACTAGAGCAATGTATAGGAATCTCC 779 consensus_9336#1 CTCCTCTGGCCATGAGACGAACCATGNGCTTCATAACTAGNGCAATGTATAGGAATCTCC 166 ************************** ************* ******************* consensus_9336#0 TAAGATATATATAGTGTCATGTCATCCATGCTACGTTATCAACTGGGGAACGCTGATGTA 839 consensus_9336#1 TAAGATATATATAGTGTCATGTCATCCATGCTACGTTNTCAACTGGGGAACGNTGATGTA 226 ************************************* ************** ******* consensus_9336#0 CGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTG 899 consensus_9336#1 CGAGCTTCAATTTGAGCATAGCGGTACCGTACGTGCTGTGTTCTTCAGGCTTTGTAACTG 286 ************************************************************ consensus_9336#0 GTAGTACCTTCTACTACGATGGTTCATGCCCCAAATGCCAATATAGTACTCGACTTG--- 956 consensus_9336#1 GTAGTACCTTCTACTACGATGGTTCATGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 346 *********************************** ** * * * * consensus_9336#0 --------------------- consensus_9336#1 AAAAAAAAAAAAAAAAAAAAA 367 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||