cluster # 9346

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Oryza sativa
cluster # 9346 cluster # 9346 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9346#0 length = 842 sequences # 5

consensus_9346#1 length = 457 sequences # 1

consensusID : consensus_9346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 842
fasta sequence

                              [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA-GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCACT]

[+] EMBL AK102727             [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCACT]
[+] EMBL CF313375             [CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGAGGGGGGGAGATGGACCANGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK058872             [ TTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGTTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGAT                                                                                                                     ]
[+] EMBL AU029868             [                              ATTTCGGTTGGATTCGTGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATNCGTCTGTCCTGCGATTCTTTACCTGTGTGACTGGC NCCTGGAGAAGGG AAGCTCTCTGATA                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB097062             [                                              TGGAGGCGGATTGGGGATTTGGATTTGGATTGGAGAGA GGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGAGCTACTGGTTCAGCAAGAGGGCAAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCTCAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGATGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCCGCGGGCCTCTTCCCAAGGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGATTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTG                                                                                                                                       ]




>consensus_9346#0
CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGG
GGATTTGGATTTGGATTGGAGAGAGGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGA
GCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCT
CAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGA
TGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAA
GGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT
CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG
GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT
GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA
AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT
TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC
AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA
TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTG
TGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCA
CT

consensusID : consensus_9346#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101463             [TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9346#1
TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACA
AGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTGGCTACCTGGAGAAGGGAAAGC
TCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCATCA
AGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACG
CATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGTTCTGAGCTTGTACCTGCCATG
AAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAACAAATATCAATTGTCATATCTC
GTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAGAGT
GTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9346#0      CTTCTTCTTCCTCATTCCAATCTCCCCCCAATTTCGGTTGGATTCGTGGAGGCGGATTGG 60
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      GGATTTGGATTTGGATTGGAGAGAGGGGGGAGATGGACCAGGTGCTGAACAAGGTGGGGA 120
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      GCTACTGGTTCAGCAAGAGGGCGAGCAAGGAGATCGACTCCATCGGCGACGACATCAGCT 180
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      CAATCTCTACAAGCATTGGAACAGGAGCTAAATGGATGGTGAACAAGATCAAAGGGAAGA 240
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      TGCAGAAAGCATTGCCAGACCTTCTCAAGGAATATGACATGCCGGCGGGCCTCTTCCCAA 300
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      GGGATGCTACTAACTATGAGTTCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT 360
consensus_9346#1      ---------------------TCAATGAGGAGACAAAGAAGCTAACCGTGTACATTCCTT 39
                                           ***************************************

consensus_9346#0      CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG 420
consensus_9346#1      CAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGACTG 99
                      ************************************************************

consensus_9346#0      GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT 480
consensus_9346#1      GCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTT 159
                      ************************************************************

consensus_9346#0      GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA 540
consensus_9346#1      GGACCAAGGTGACTGCCATCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGA 219
                      ************************************************************

consensus_9346#0      AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT 600
consensus_9346#1      AGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGAGATGGTATCCCCATAGACAAGT 279
                      ************************************************************

consensus_9346#0      TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC 660
consensus_9346#1      TCTGAGCTTGTACCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACAAC 339
                      ************************************************************

consensus_9346#0      AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA 720
consensus_9346#1      AAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATA 399
                      ************************************************************

consensus_9346#0      TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCACCTTAAAAATTTGGTGCTTATTTGGTTG 780
consensus_9346#1      TTGATTGTCCGGCCCAAGAGTGTTTCTCAGCNCCTTAAAAAAAAAAAAAAAAAAAAAA-- 457
                      ******************************* *********          *        

consensus_9346#0      TGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAGTTTAAGGCCATGTTTGGCACCA 840
consensus_9346#1      ------------------------------------------------------------
                                                                                  

consensus_9346#0      CT 842
consensus_9346#1      --