These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence [AAGAAAAATCTGTCACTGAACAGAAATACGTCCGCAGTACAATCCATCCCCAGATTCTGGGTGAAGGTATTTACAGGAGGAAAATGTAAGGCACAAGAATATGAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGAT] [+] EMBL CB630801 [AAGAAAAATCTGTCACTGAACAGAAATACGTCCGCAGTACAATCCATCCCCAGATTCTGGGTGAAGGTATTTACAGGAGGAAAATGTAAGGCACAAGAATATGAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGT ] [+] EMBL CB644764 [ tctttttttTTTTTC ATCCGCCGGATTGACTCACATCTTGCACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGAT] consensusID : consensus_9356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence [TCCTTTTTTTTTTTACAATAATACAAGGGATAAAGAATGTTTCTAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCTCTGCATCGGGGTGCTTGGAAAAGAGTCAAACAAAGAGTTCTGCATAGGAGTACTTGGTACAGAATCAAATAC] [+] EMBL CB660890 [TCCTTTTTTTTTTTACAATAATACAAGGGATAAAGAATGTTTCTAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCT ] [-] EMBL AU030465 [ TGCTNCGG AAG ATC AATCTNCCAAAGGTGTCA TGCTGCCTTGATCAGCG TGCTCCGGANGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATNGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTTCCCANTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGGTGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGCAGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCTCTGCATCGGGGTGCTTGGAAAAGAGTCAAACAAAGAGTTCTGCATAGGAGTACTTGGTACAGAATCAAATAC] consensusID : consensus_9356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTTTTTTTTTTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAAAACATCAAATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGAACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCCGCTTCGCTATATCTTGGTG] [+] EMBL CA762048 [TTTTTTTTTTTTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAAAACATCAAATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGAACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAAGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCTCGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAAGGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTCACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTCGAATGAACTGTCGTCTCCCGCTTCGCTATATCTTGGTG] consensusID : consensus_9356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [TTTTTTTTTTTAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGGCCAGTACCAAAAGGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTT] [-] EMBL AU095065 [TTTTTTTTTTTAAAACGCTAAAAACATGGACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGTATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCCTAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGGCCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCACAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTGTCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGGCCAGTACCAAAAGGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATCAAATCTCGCAAAAGCATCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9356#0 AAGAAAAATCTGTCACTGAACAGAAATACGTCCGCAGTACAATCCATCCCCAGATTCTGG 60 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 ------------------------------------------------------------ consensus_9356#1 ------------------------------------------------------------ consensus_9356#0 GTGAAGGTATTTACAGGAGGAAAATGTAAGGCACAAGAATATGAAAACGCTAAAAACATG 120 consensus_9356#3 --------------------------------TTTTTTTTTTTAAAACGCTAAAAACATG 28 consensus_9356#2 ------------------------------------------------------------ consensus_9356#1 ------------------------------------------------------------ consensus_9356#0 GACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGT 180 consensus_9356#3 GACAGCTCGTAATTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGT 88 consensus_9356#2 --TTTTTTTTTTTTTTTCAATCCGCCGGATTGACTCACATCTTGTACAATAATACAAGGT 58 consensus_9356#1 -------------------------------TCCTTTTTTTTTTTACAATAATACAAGGG 29 ** * ** *************** consensus_9356#0 ATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCC 240 consensus_9356#3 ATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCC 148 consensus_9356#2 ATAAAGAATGTTTATAATCACCATCCCACCAACACATATGCGCGGTAAAACATCAAATCC 118 consensus_9356#1 ATAAAGAATGTTTCTAATCACCATCCCACCAACACATATGCGCGGTAGAACATCAGATCC 89 ************* ********************************* ******* **** consensus_9356#0 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 300 consensus_9356#3 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 208 consensus_9356#2 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 178 consensus_9356#1 TAGGTACAAAAATAAGAAACACAAAGCAAACACACAAGCAAGCCCCATTGCAAGCTGAGG 149 ************************************************************ consensus_9356#0 CCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCA 360 consensus_9356#3 CCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCA 268 consensus_9356#2 CCCAAGCAAAAACTGTCTTGCCCTTGAACGTGTATATATATTTATCTGCAGTAAGGTGCA 238 consensus_9356#1 CCCAAGCAAAAACTGTCTTGCCCTTGTACGTGTATATATATTTATCTGCAGTAAGGTGCA 209 ************************** ********************************* consensus_9356#0 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 420 consensus_9356#3 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 328 consensus_9356#2 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 298 consensus_9356#1 CAAACACATGATGATGACCTCTATAGTACAATCAATACCTGTCAAAATGCACTCCATCTG 269 ************************************************************ consensus_9356#0 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAA 480 consensus_9356#3 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGGCCAGTACCAAAA 388 consensus_9356#2 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAA 358 consensus_9356#1 TCGGTTCCATGCTTCGTCGGGCTAGAGGTGTCTGATGACTTGAACGGTCCAGTACCAAAA 329 *********************************************** ************ consensus_9356#0 GG-ATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 539 consensus_9356#3 GGGATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 448 consensus_9356#2 GG-ATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 417 consensus_9356#1 GG-ATCATCCTCATCGAACGAATAACCTCGGCTGTTGTAGTCCGTGCTCTTCATTGAATC 388 ** ********************************************************* consensus_9356#0 AAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCT 599 consensus_9356#3 AAATCTCGCAAAAGCATCTGTT-------------------------------------- 470 consensus_9356#2 AAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCT 477 consensus_9356#1 AAATCTCGCAAAAGCATCTGTTCTGTCATGGTCGCTGCTGCTATTCATGGAATCATACCT 448 ********************** consensus_9356#0 CGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAA 659 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 CGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAA 537 consensus_9356#1 CGTGAAGCTGTTGCCACCACCTTGATCAGCATTGCTGCGGAAAGAATCAAATCTACCAAA 508 consensus_9356#0 GGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTC 719 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 GGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTC 597 consensus_9356#1 GGTGTCATTGCTGCCTTGATCAGCGTTGCTCCGGAAGGAATCAAATCTTGAAAAGCTGTC 568 consensus_9356#0 ACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTC 779 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 ACGCTGCCCAAATGAATTGCTGTCATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTC 657 consensus_9356#1 ACGCTGCCCAAATGAATTGCTGTAATTCATGCCAAATGAGTCCATCTGCGAGAAGGTGTC 628 consensus_9356#0 GAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGG 839 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 GAATGAACTGTCGTCTCCCGCTTCGCTATATCTTGGTG---------------------- 695 consensus_9356#1 GAATGAACTGTCGTCTCCAGCTTCGCTATATCTTGGTGAGAAGCTAGAGTTGTACATTGG 688 consensus_9356#0 TGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGC 899 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 ------------------------------------------------------------ consensus_9356#1 TGTGCTGGGAACAGAAGAATCAAAGAAACCCCTTTGCTCTTTGCCATATATGCTGCTGGC 748 consensus_9356#0 AGTAGGAGAT-------------------------------------------------- 909 consensus_9356#3 ------------------------------------------------------------ consensus_9356#2 ------------------------------------------------------------ consensus_9356#1 AGTAGGAGATTCTGCTCTGCTTGGGCCAGAATCAAACAGTGATCTCTGCATCGGGGTGCT 808 consensus_9356#0 --------------------------------------------------------- consensus_9356#3 --------------------------------------------------------- consensus_9356#2 --------------------------------------------------------- consensus_9356#1 TGGAAAAGAGTCAAACAAAGAGTTCTGCATAGGAGTACTTGGTACAGAATCAAATAC 865 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||