Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9361 cluster # 9361       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9361#0 length = 2269 sequences # 5  
consensus_9361#1 length = 453 sequences # 1  

consensusID : consensus_9361#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2269
fasta sequence
                              [CCCATCTCACACTCCACCCCCCCTCTCTCTCGTTTCCTCCTCTCCACCCAACCCAACCCAACTCGGTCGTCGTCGTCGTCTTCCTCTCGAATCCACGGTTCAAAAATTCCCTCCACTCGCGCCCATTTCCCCAAACCCTAGCCGGCCCCGGCTCGCCGCCGCCCGCCGCCCGCCGGCTGCCTACCTCGGCCTGCCGGGATCCGTGCGCGGAACATGCGGGATCCCGGACCATGGCGACCGGACCCGATCTGACCCCACCCGCCGCCGCCGCCTCCGCCGAAGCGCCGTCGGCGTCGGCGGCCAAGAAGGACCGCCACATCGTGAGTTGGAGCACCGAGGAGGATGATGTGCTTCGTACTCAAATTGCGCTTCATGGAACTGATAACTGGACAATTATAGCGGCACAATTCAAGGACAAGACGGCCAGACAGTGCAGGAGAAGATGGTACAATTATTTGAACTCGGAGTGCAAGAAAGGAGGGTGGTCCAGAGAAGAGGACTTGCTATTGTGTGAGGCTCAAAAAGTTCTTGGGAACAAATGGACTGAAATAGCAAAGGTTGTCTCAGGCAGAACTGATAATGCAGTGAAGAATCGGTTTTCTACTCTATGCAAAAGGCGGGCCAAGGATGACGAGCTATTCAAGGAAAATGGATCATTATGTTCCAGTACAAGTTCAAAGAGGGCATTGGTACAAACTGGGTGTCTCACATCTGGTGCAAGTGGCTCTGCACCACCTATTAAGCAGATGAGGCCATGTAATTCTGATTTCAAAGAGAATATGACACCAAATATGAGATTAGTTGGACAAGACAAGAGCACACAAGATTCTCGACAGCCTCTTGCAATTGTTTATCAAAACAATCAAGATAATATGAATACAATGGATACCCAAAATCTTGTTGCTAAAACTGCAGCAAAACAATTATTTGCGGGGGAACAGAATTGCGTTAAGCATGAGGGTAATTTTTTGAACAAGGATGATCCAAAAATTGCTACTTTATTGCAGCGAGCCGACTTGCTTTGCTCCCTAGCAACGAAAATAAATACTGAAAATACAAGCCAAAGCATGGACGAAGCCTGGCAGCAACTACAGCATCATTTGGATAAGAAAGATGATAATGACATGTCAGAGAGCAGTATGTCGGGAATGGCTTCACTCCTAGAGGATCTTGACGATTTAATTGTAGACCCCTATGAGAATGAAGAGGAAGAAGACCAGGATTTAAGGGAGCAGACCGAACAGATTGATGTGGAGAACAAGCAAAATTCTTCACAAACTAGCATGGAAGTTACATCACAAATGGTTCCTGACAATAAAATGGAGGACTGCCCAAATGATAAGAGCACAGAAGACAATAATATGGAACCGTGCCCTGGTGAAGACATACCAACATCTGAAAACTTGACTGAGGCTGCTATCGAAGATAGCTTGCTTCAATGTGTGGAATACAGCTCTCCTGTACACACAGTTATTCAAGCTAAAACAGATGCAGAAATAGCAGCATCGGAGAATCTTAGCGAGGTTCTCGAACATAACAGGCTTCAGTGTATTCAATTAGCCTCCCCTGCTCAGACAACTACCCCAGTTGAAGCAAATGCAGAAA-CACCAGC-TTCTGAGAAGTTA-CGCGAGGTTGTCAAATGTAACAATCCTTCATGTATCGAATTCACTTCGCCTGCTCATACAGTCCCAACATTCCTGCCGTACGCAGATGACATGCCGACTCCAAAATTTACTGCTAGTGAGAGGAATTTTTTGCTGTCTGTGCTTGAGTTGACCTCGCCAGGGTCGAGGCCAGACACTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAACTGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCATGCATGCCCCCTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTCCTATTTGCATCAAGTTTGGATATCTCATATCCAAGTTTAGCTGTTTGTATATGAGATCTCAATTGTTTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATTGGCGGTGTTGTAGTATCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCCAAAATATAGAATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCCTTCTATGTTGTACGGAATATATTGGTTTGGTGTGTAGTGTGATTTAACAAAAAAAAAAAAA]

[+] EMBL AK063426             [CCCATCTCACACTCCACCCCCCCTCTCTCTCGTTTCCTCCTCTCCACCCAACCCAACCCAACTCGGTCGTCGTCGTCGTCTTCCTCTCGAATCCACGGTTCAAAAATTCCCTCCACTCGCGCCCATTTCCCCAAACCCTAGCCGGCCCCGGCTCGCCGCCGCCCGCCGCCCGCCGGCTGCCTACCTCGGCCTGCCGGGATCCGTGCGCGGAACATGCGGGATCCCGGACCATGGCGACCGGACCCGATCTGACCCCACCCGCCGCCGCCGCCTCCGCCGAAGCGCCGTCGGCGTCGGCGGCCAAGAAGGACCGCCACATCGTGAGTTGGAGCACCGAGGAGGATGATGTGCTTCGTACTCAAATTGCGCTTCATGGAACTGATAACTGGACAATTATAGCGGCACAATTCAAGGACAAGACGGCCAGACAGTGCAGGAGAAGATGGTACAATTATTTGAACTCGGAGTGCAAGAAAGGAGGGTGGTCCAGAGAAGAGGACTTGCTATTGTGTGAGGCTCAAAAAGTTCTTGGGAACAAATGGACTGAAATAGCAAAGGTTGTCTCAGGCAGAACTGATAATGCAGTGAAGAATCGGTTTTCTACTCTATGCAAAAGGCGGGCCAAGGATGACGAGCTATTCAAGGAAAATGGATCATTATGTTCCAGTACAAGTTCAAAGAGGGCATTGGTACAAACTGGGTGTCTCACATCTGGTGCAAGTGGCTCTGCACCACCTATTAAGCAGATGAGGCCATGTAATTCTGATTTCAAAGAGAATATGACACCAAATATGAGATTAGTTGGACAAGACAAGAGCACACAAGATTCTCGACAGCCTCTTGCAATTGTTTATCAAAACAATCAAGATAATATGAATACAATGGATACCCAAAATCTTGTTGCTAAAACTGCAGCAAAACAATTATTTGCGGGGGAACAGAATTGCGTTAAGCATGAGGGTAATTTTTTGAACAAGGATGATCCAAAAATTGCTACTTTATTGCAGCGAGCCGACTTGCTTTGCTCCCTAGCAACGAAAATAAATACTGAAAATACAAGCCAAAGCATGGACGAAGCCTGGCAGCAACTACAGCATCATTTGGATAAGAAAGATGATAATGACATGTCAGAGAGCAGTATGTCGGGAATGGCTTCACTCCTAGAGGATCTTGACGATTTAATTGTAGACCCCTATGAGAATGAAGAGGAAGAAGACCAGGATTTAAGGGAGCAGACCGAACAGATTGATGTGGAGAACAAGCAAAATTCTTCACAAACTAGCATGGAAGTTACATCACAAATGGTTCCTGACAATAAAATGGAGGACTGCCCAAATGATAAGAGCACAGAAGACAATAATATGGAACCGTGCCCTGGTGAAGACATACCAACATCTGAAAACTTGACTGAGGCTGCTATCGAAGATAGCTTGCTTCAATGTGTGGAATACAGCTCTCCTGTACACACAGTTATTCAAGCTAAAACAGATGCAGAAATAGCAGCATCGGAGAATCTTAGCGAGGTTCTCGAACATAACAGGCTTCAGTGTATTCAATTAGCCTCCCCTGCTCAGACAACTACCCCAGTTGAAGCAAATGCAGAAA CACCAGC TTCTGAGAAGTTA CGCGAGGTTGTCAAATGTAACAATCCTTCATGTATCGAATTCACTTCGCCTGCTCATACAGTCCCAACATTCCTGCCGTACGCAGATGACATGCCGACTCCAAAATTTACTGCTAGTGAGAGGAATTTTTTGCTGTCTGTGCTTGAGTTGACCTCGCCAGGGTCGAGGCCAGACACTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAACTGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCATGCATGCCCCCTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTCCTATTTGCATCAAGTTTGGATATCTCATATCCAAGTTTAGCTGTTTGTATATGAGATCTCAATTGTTTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATTGGCGGTGTTGTAGTAGCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCCAAAATATAGAATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCTTTCTATGTTGTACGGAATATATTGGTTTGGTGTGTAGTGTGATTTAACAgtttc       ]
[+] EMBL CB631003             [                              CGTTTCCTCCTCTCCACCCAACCCAACCCAACTCGGTCGTCGTCGTCGTCTTCCTCTCGAATCCACGGTTCAAAAATTCCCTCCACTCGCGCCCATTTCCCCAAACCCTAGCCGGCCCCGGCTCGCCGCCGCCCGCCGCCCGCCGGCTGCCTACCTCGGCCTGCCGGGATCCGTGCGCGGAACATGCGGGATCCCGGACCATGGCGACCGGACCCGATCTGACCCCACCCGCCGCCGCCGCCTCCGCCGAAGCGCCGTCGGCGTCGGCGGCCAAGAAGGACCGCCACATCGTGAGTTGGAGCACCGAGGAGGATGATGTGCTTCGTACTCAAATTGCGCTTCATGGAACTGATAACTGGACAATTATAGCGGCACAATTCAAGGACAAGACGGCCAGACAGTGCAGGAGAAGATGGTACAATTATTTGAACTCGGAGTGCAAGAAAGGAGGGTGGTCCAGAGAAGAGGACTTGCTATTGTGTGAGGCTCAAAAAGTTCTTGGGAACAAATGGACTGAAATAGCAAAGGTTGTCTCAGGCAGAACTGATAATGCAGTGAAGAATCGGTTTTCTACTCTATGCAAAAGGCGGGCCAAGGATGACGAGCTATTCAAGGAAAATGGATCATTATGTTCCAGTACAAGTGCAAAGAGGGCATTGGTACAAACTGGGTGTCTCACATCTGGTGCAAGTGGCTCTGCACCACCTATTAAGCAGATGAAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF304895             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGTTCCTGACAATAAAATGGAGGACTGCCCAAATGATAAGAGCACAGAAGACAATAATATGGAACCGTGCCCTGGTGAAGACATACCAACATCTGAAAACTTGACTGAGGCTGCTATCGAAGATAGCTTGCTTCAATGTGTGGAATACAGCTCTCCTGTACACACAGTTATTCAAGCTAAAACAGATGCAGAAATAGCAGCATCGGAGAATCTTAGCGAGGTTCTCGAACATAACAGGCTTCAGTGTATTCAATTAGCCTCCCCTGCTCAGACAACTACCCCAGTTGAAGCAAATGCAACAA CACCAGC TTCTGAGAAGTTA CGCGAGGTTGTCAAATGTAACAATCCTTCATGTATCGAATTCACTTCGCCTGCTCATACAGTCCCAACATTCCTGCCGTACGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CA763233             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCAGACTCC  CCCCAG TGAAGCAAATGCAGAAA CACCAGCTTTCTGAGAAGTTA AGCGAGGTTGTCAAATGTAACAATCCTTCATGAATCGAATTCACTTTGCCTGCTCATACAGTCCCAACATTCCTGCCGTACGCAGATGACATGCCGACTCCAAAATTTACTGCTAGTGAGAGGAATTTTNTGCTGTCTGTGCTTGAGTTGACCCCGCCAGGGTCGAGGCCAGACACTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAACTGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCATGCATGCCCCCTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTCCTATTTGCATCAAGTTTGGATATCTCATATCCAAGTTTAGCTGTTTGTATATGAGATCTCAATTGTTTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATNGGCGGTGTTGTAGTATCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCCAAAATATAGAATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCCTTCTATGTTGTACGGAATATATTGGTTTGGTGTGTAGTGTGATTTACCAAAAAAAAAAAAA]
[-] EMBL CA763232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cagACTGCCCCAGGTAAAGCCAATGC GAAACCCCCAGC TTTTGAGAAATTAGCG GAGGTCGTCAAATGTAACAGTCCCCCATGTATGGAATCCACTTCCCCTGCTCATACAGTCCCAACATTCTTGCCGTACGCAGATGACATCGCGACTCCAAAATTTACTGCTAGTGAGAGGAATTTTTTGCTGTCTGTGCTTGAGTTGACCTCGCCAGGGTCGAGGCCAGACACTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAACTGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCATGCATGCCCCCTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTCCTATTTGCATCAAGTTTGGATATCTCATATCCAAGTTTAGCTGTTTGTATATGAGATCTCAATTGTCTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATTGGCGGTGTTGTAGTATCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCCAAAATATAGAATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCCTTCTATGTTGTACGGAATATATTGGTTTGGTGTGTAGTGTGATTTAAAAAAAAAAAA    ]


>consensus_9361#0 CCCATCTCACACTCCACCCCCCCTCTCTCTCGTTTCCTCCTCTCCACCCAACCCAACCCA ACTCGGTCGTCGTCGTCGTCTTCCTCTCGAATCCACGGTTCAAAAATTCCCTCCACTCGC GCCCATTTCCCCAAACCCTAGCCGGCCCCGGCTCGCCGCCGCCCGCCGCCCGCCGGCTGC CTACCTCGGCCTGCCGGGATCCGTGCGCGGAACATGCGGGATCCCGGACCATGGCGACCG GACCCGATCTGACCCCACCCGCCGCCGCCGCCTCCGCCGAAGCGCCGTCGGCGTCGGCGG CCAAGAAGGACCGCCACATCGTGAGTTGGAGCACCGAGGAGGATGATGTGCTTCGTACTC AAATTGCGCTTCATGGAACTGATAACTGGACAATTATAGCGGCACAATTCAAGGACAAGA CGGCCAGACAGTGCAGGAGAAGATGGTACAATTATTTGAACTCGGAGTGCAAGAAAGGAG GGTGGTCCAGAGAAGAGGACTTGCTATTGTGTGAGGCTCAAAAAGTTCTTGGGAACAAAT GGACTGAAATAGCAAAGGTTGTCTCAGGCAGAACTGATAATGCAGTGAAGAATCGGTTTT CTACTCTATGCAAAAGGCGGGCCAAGGATGACGAGCTATTCAAGGAAAATGGATCATTAT GTTCCAGTACAAGTTCAAAGAGGGCATTGGTACAAACTGGGTGTCTCACATCTGGTGCAA GTGGCTCTGCACCACCTATTAAGCAGATGAGGCCATGTAATTCTGATTTCAAAGAGAATA TGACACCAAATATGAGATTAGTTGGACAAGACAAGAGCACACAAGATTCTCGACAGCCTC TTGCAATTGTTTATCAAAACAATCAAGATAATATGAATACAATGGATACCCAAAATCTTG TTGCTAAAACTGCAGCAAAACAATTATTTGCGGGGGAACAGAATTGCGTTAAGCATGAGG GTAATTTTTTGAACAAGGATGATCCAAAAATTGCTACTTTATTGCAGCGAGCCGACTTGC TTTGCTCCCTAGCAACGAAAATAAATACTGAAAATACAAGCCAAAGCATGGACGAAGCCT GGCAGCAACTACAGCATCATTTGGATAAGAAAGATGATAATGACATGTCAGAGAGCAGTA TGTCGGGAATGGCTTCACTCCTAGAGGATCTTGACGATTTAATTGTAGACCCCTATGAGA ATGAAGAGGAAGAAGACCAGGATTTAAGGGAGCAGACCGAACAGATTGATGTGGAGAACA AGCAAAATTCTTCACAAACTAGCATGGAAGTTACATCACAAATGGTTCCTGACAATAAAA TGGAGGACTGCCCAAATGATAAGAGCACAGAAGACAATAATATGGAACCGTGCCCTGGTG AAGACATACCAACATCTGAAAACTTGACTGAGGCTGCTATCGAAGATAGCTTGCTTCAAT GTGTGGAATACAGCTCTCCTGTACACACAGTTATTCAAGCTAAAACAGATGCAGAAATAG CAGCATCGGAGAATCTTAGCGAGGTTCTCGAACATAACAGGCTTCAGTGTATTCAATTAG CCTCCCCTGCTCAGACAACTACCCCAGTTGAAGCAAATGCAGAAACACCAGCTTCTGAGA AGTTACGCGAGGTTGTCAAATGTAACAATCCTTCATGTATCGAATTCACTTCGCCTGCTC ATACAGTCCCAACATTCCTGCCGTACGCAGATGACATGCCGACTCCAAAATTTACTGCTA GTGAGAGGAATTTTTTGCTGTCTGTGCTTGAGTTGACCTCGCCAGGGTCGAGGCCAGACA CTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAACTGTTATAAGT ATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCA TGCATGCCCCCTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTC CTATTTGCATCAAGTTTGGATATCTCATATCCAAGTTTAGCTGTTTGTATATGAGATCTC AATTGTTTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATTGGCGGTGTTGTAG TATCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCC AAAATATAGAATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCCTTCTATGTTGTA CGGAATATATTGGTTTGGTGTGTAGTGTGATTTAACAAAAAAAAAAAAA



consensusID : consensus_9361#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence
                              [CTTTTTGCAAAAGGGGTTTCCTTAATAGCCTATGAAAATGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGGGGGCCTGGGATTTAAACCCAAGCCTGCCAAGCATGCCCCCTCAGCATGCCTTTTATTTAGGGGGGGTTAGGAGGTTTTTTGACATACTCCTATTTGCATCAAGTTTGGATATTTCATATCCAAGTTTAGCTGTTTGTATATGAGATTTCAATTGTTTTAAGAGTTTCATAGTTTGTTTGGTTGTACATATTGCATTGGGGGGGTTGTAGTATCATCATTCAGGAATTAAAAGGGGGGATGGGGTTCCAAAGAGTTTTCAGCTTGTATCCAAAATATAGAATAAGTTCTTTTTTTTGGGTAATTAACTTTTGTAACCTTTTTATGTTGTACGGAAAATATTGGTTTGGGGGGTAGGGGGATTTTAAAGGGGTCCT]

[-] EMBL CB631004             [CTTTTTGCAAAAGGGGTTTCCTTAATAGCCTATGAAAATGTTATAAGTATATTTCAGTTTTTTTTCCTGCATTATTGGGGGGCCTGGGATTTAAACCCAAGCCTGCCAAGCATGCCCCCTCAGCATGCCTTTTATTTAGGGGGGGTTAGGAGGTTTTTTGACATACTCCTATTTGCATCAAGTTTGGATATTTCATATCCAAGTTTAGCTGTTTGTATATGAGATTTCAATTGTTTTAAGAGTTTCATAGTTTGTTTGGTTGTACATATTGCATTGGGGGGGTTGTAGTATCATCATTCAGGAATTAAAAGGGGGGATGGGGTTCCAAAGAGTTTTCAGCTTGTATCCAAAATATAGAATAAGTTCTTTTTTTTGGGTAATTAACTTTTGTAACCTTTTTATGTTGTACGGAAAATATTGGTTTGGGGGGTAGGGGGATTTTAAAGGGGTCCT]


>consensus_9361#1 CTTTTTGCAAAAGGGGTTTCCTTAATAGCCTATGAAAATGTTATAAGTATATTTCAGTTT TTTTTCCTGCATTATTGGGGGGCCTGGGATTTAAACCCAAGCCTGCCAAGCATGCCCCCT CAGCATGCCTTTTATTTAGGGGGGGTTAGGAGGTTTTTTGACATACTCCTATTTGCATCA AGTTTGGATATTTCATATCCAAGTTTAGCTGTTTGTATATGAGATTTCAATTGTTTTAAG AGTTTCATAGTTTGTTTGGTTGTACATATTGCATTGGGGGGGTTGTAGTATCATCATTCA GGAATTAAAAGGGGGGATGGGGTTCCAAAGAGTTTTCAGCTTGTATCCAAAATATAGAAT AAGTTCTTTTTTTTGGGTAATTAACTTTTGTAACCTTTTTATGTTGTACGGAAAATATTG GTTTGGGGGGTAGGGGGATTTTAAAGGGGTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9361#0      CCCATCTCACACTCCACCCCCCCTCTCTCTCGTTTCCTCCTCTCCACCCAACCCAACCCA 60
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      ACTCGGTCGTCGTCGTCGTCTTCCTCTCGAATCCACGGTTCAAAAATTCCCTCCACTCGC 120
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GCCCATTTCCCCAAACCCTAGCCGGCCCCGGCTCGCCGCCGCCCGCCGCCCGCCGGCTGC 180
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CTACCTCGGCCTGCCGGGATCCGTGCGCGGAACATGCGGGATCCCGGACCATGGCGACCG 240
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GACCCGATCTGACCCCACCCGCCGCCGCCGCCTCCGCCGAAGCGCCGTCGGCGTCGGCGG 300
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CCAAGAAGGACCGCCACATCGTGAGTTGGAGCACCGAGGAGGATGATGTGCTTCGTACTC 360
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      AAATTGCGCTTCATGGAACTGATAACTGGACAATTATAGCGGCACAATTCAAGGACAAGA 420
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CGGCCAGACAGTGCAGGAGAAGATGGTACAATTATTTGAACTCGGAGTGCAAGAAAGGAG 480
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GGTGGTCCAGAGAAGAGGACTTGCTATTGTGTGAGGCTCAAAAAGTTCTTGGGAACAAAT 540
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GGACTGAAATAGCAAAGGTTGTCTCAGGCAGAACTGATAATGCAGTGAAGAATCGGTTTT 600
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CTACTCTATGCAAAAGGCGGGCCAAGGATGACGAGCTATTCAAGGAAAATGGATCATTAT 660
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GTTCCAGTACAAGTTCAAAGAGGGCATTGGTACAAACTGGGTGTCTCACATCTGGTGCAA 720
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GTGGCTCTGCACCACCTATTAAGCAGATGAGGCCATGTAATTCTGATTTCAAAGAGAATA 780
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      TGACACCAAATATGAGATTAGTTGGACAAGACAAGAGCACACAAGATTCTCGACAGCCTC 840
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      TTGCAATTGTTTATCAAAACAATCAAGATAATATGAATACAATGGATACCCAAAATCTTG 900
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      TTGCTAAAACTGCAGCAAAACAATTATTTGCGGGGGAACAGAATTGCGTTAAGCATGAGG 960
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GTAATTTTTTGAACAAGGATGATCCAAAAATTGCTACTTTATTGCAGCGAGCCGACTTGC 1020
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      TTTGCTCCCTAGCAACGAAAATAAATACTGAAAATACAAGCCAAAGCATGGACGAAGCCT 1080
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GGCAGCAACTACAGCATCATTTGGATAAGAAAGATGATAATGACATGTCAGAGAGCAGTA 1140
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      TGTCGGGAATGGCTTCACTCCTAGAGGATCTTGACGATTTAATTGTAGACCCCTATGAGA 1200
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      ATGAAGAGGAAGAAGACCAGGATTTAAGGGAGCAGACCGAACAGATTGATGTGGAGAACA 1260
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      AGCAAAATTCTTCACAAACTAGCATGGAAGTTACATCACAAATGGTTCCTGACAATAAAA 1320
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      TGGAGGACTGCCCAAATGATAAGAGCACAGAAGACAATAATATGGAACCGTGCCCTGGTG 1380
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      AAGACATACCAACATCTGAAAACTTGACTGAGGCTGCTATCGAAGATAGCTTGCTTCAAT 1440
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GTGTGGAATACAGCTCTCCTGTACACACAGTTATTCAAGCTAAAACAGATGCAGAAATAG 1500
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CAGCATCGGAGAATCTTAGCGAGGTTCTCGAACATAACAGGCTTCAGTGTATTCAATTAG 1560
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CCTCCCCTGCTCAGACAACTACCCCAGTTGAAGCAAATGCAGAAACACCAGCTTCTGAGA 1620
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      AGTTACGCGAGGTTGTCAAATGTAACAATCCTTCATGTATCGAATTCACTTCGCCTGCTC 1680
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      ATACAGTCCCAACATTCCTGCCGTACGCAGATGACATGCCGACTCCAAAATTTACTGCTA 1740
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      GTGAGAGGAATTTTTTGCTGTCTGTGCTTGAGTTGACCTCGCCAGGGTCGAGGCCAGACA 1800
consensus_9361#1      ------------------------------------------------------------
                                                                                  

consensus_9361#0      CTTCTCAGCAGCCTTCTTGCAAAAGGGCTCTCCTTAATAGCCTATGAAACTGTTATAAGT 1860
consensus_9361#1      ------------CTTTTTGCAAAAGGGGTTTCCTTAATAGCCTATGAAAATGTTATAAGT 48
                                  *** *********** * ******************* **********

consensus_9361#0      ATATTTCAGTTTTTTTTCCTGCATTATTGGTGTGCCTGGGATCTAAACCCAAGCCTGCCA 1920
consensus_9361#1      ATATTTCAGTTTTTTTTCCTGCATTATTGGGGGGCCTGGGATTTAAACCCAAGCCTGCCA 108
                      ****************************** * ********* *****************

consensus_9361#0      TGCATGCCCCCTCAGCATGCCTACTATTCAGCGTGTGTTAGGAGGTTCTTTGACATACTC 1980
consensus_9361#1      AGCATGCCCCCTCAGCATGCCTTTTATTTAGGGGGGGTTAGGAGGTTTTTTGACATACTC 168
                       *********************  **** ** * * *********** ************

consensus_9361#0      CTATTTGCATCAAGTTTGGATATCTCATATCCAAGTTTAGCTGTTTGTATATGAGATCTC 2040
consensus_9361#1      CTATTTGCATCAAGTTTGGATATTTCATATCCAAGTTTAGCTGTTTGTATATGAGATTTC 228
                      *********************** ********************************* **

consensus_9361#0      AATTGTTTTAAGAGTCTCATAGTTTGTTTGGTTGTACATATTGCATTGGCGGTGTTGTAG 2100
consensus_9361#1      AATTGTTTTAAGAGTTTCATAGTTTGTTTGGTTGTACATATTGCATTGGGGGGGTTGTAG 288
                      *************** ********************************* ** *******

consensus_9361#0      TATCATCATACAGGAATTAAAAGGGGCGATGGTGTACCAAAGAGTTTACAGCTTGTATCC 2160
consensus_9361#1      TATCATCATTCAGGAATTAAAAGGGGGGATGGGGTTCCAAAGAGTTTTCAGCTTGTATCC 348
                      ********* **************** ***** ** *********** ************

consensus_9361#0      AAAATATAGAATAAGTACTATTCTTTGTGTAATTAACTCTTGTAACCCTTCTATGTTGTA 2220
consensus_9361#1      AAAATATAGAATAAGTTCTTTTTTTTGGGTAATTAACTTTTGTAACCTTTTTATGTTGTA 408
                      **************** ** ** **** ********** ******** ** *********

consensus_9361#0      CGGAATATATTGGTTTGGTGTGTAGTGTGATTTAACAAAAAAAAAAAAA 2269
consensus_9361#1      CGGAAAATATTGGTTTGGGGGGTAGGGGGATTTTAAAGGGGTCCT---- 453
                      ***** ************ * **** * ***** * *            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)