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Oryza sativa
cluster # 9366 cluster # 9366       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9366#0 length = 733 sequences # 6  

consensusID : consensus_9366#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 733
fasta sequence
                              [AAGCTTTGATCGATCTCTCCCACACGGCTCAAACGCGCATACACGTAAACACACAAGCTTTGATCCTTCTGTTCGCCATGGACGGCGAGGCGACGAGCTTGATGATCTCGCCGGAGATCCGCGACGCGGTGACGAAGGTTGCCGTGTTCGTGCTGGTGCAGGCGCTGGTCTACCTCATCCTCCGCAGCTCGTCGAGCGTCTTCTCCAAGGACGGCAAGCTGAGGTCGTCCATGAGCTTCCGGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCGCCGC-TCTCCGACGTCCCCGTCGGCACCGACGAGCCCTGGCCGTCGCCGTC-GTCCTC-GCC-GTC-GCC-GACC-T-TGTC-GC-GCC-G-CTGGGCTAGCC-GCC-GCGAGGATTAATTGAA-GCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAGCTAGGTGCTAGTTTGGTTACTCTGAAGAAA-CCTGAATTATCA-TGGGTTGG-TTTGGT-TTGTGA-TTAATGGAAATGGAAAA-TTTGGGAACTGGGCT-CTGAAAGAGGCAGA-TTA-TTAGAGTGGATCTTGTAGATATGTGGATTGAATTAAGTTAATACTGAATGGTGGATTATTTGATT-CTTTACAATTTGTCTGCTTTCCTCAATCTGTAAATTGGAAGTATACTATTCAGATGGCGTAAATCTGAAGTTCTTATGTACATGCTAATACAGGAGTATTATACTATACAGTACGAAGTATTGGATTGAGAAAAAAA]

[+] EMBL AK066815             [AAGCTTTGATCGATCTCTCCCACACGGCTCAAACGCGCATACACGTAAACACACAAGCTTTGATCCTTCTGTTCGCCATGGACGGCGAGGCGACGAGCTTGATGATCTCGCCGGAGATCCGCGACGCGGTGACGAAGGTTGCCGTGTTCGTGCTGGTGCAGGCGCTGGTCTACCTCATCCTCCGCAGCTCGTCGAGCGTCTTCTCCAAGGACGGCAAGCTGAGGTCGTCCATGAGCTTCCGGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCGCCGC TCTCCGACGTCCCCGTCGGCACCGACGAGCCCTGGCCGTCGCCGTC GTCCTC GCC GTC GCC GACC T TGTC GC GCC G CTGGGCTAGCC GCC GCGAGGATTAATTGAA GCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAGCTAGGTGCTAGTTTGGTTACTCTGAAGAAA CCTGAATTATCA TGGGTTGG TTTGGT TTGTGA TTAATGGAAATGG                                                                                                                                                                                                                                                   ]
[+] EMBL AK064163             [   CTTTGATCGATCTCTCCCACACGGCTCAAACGCGCATACACGTAAACACACAAGCTTTGATCCTTCTGTTCGCCATGGACGGCGAGGCGACGAGCTTGATGATCTCGCCGGAGATCCGCGACGCGGTGACGAAGGTTGCCGTGTTCGTGCTGGTGCAGGCGCTGGTCTACCTCATCCTCCGCAGCTCGTCGAGCGTCTTCTCCAAGGACGGCAAGCTGAGGTCGTCCATGAGCTTCCGGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCGCCGC TCTCCGACGTCCCCGTCGGCACCGACGAGCCCTGGCCGTCGCCGTC GTCCTC GCC GTC GCC GACC T TGTC GC GCC G CTGGGCTAGCC GCC GCGAGGATTAATTGAA GCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAGCTAGGTGCTAGTTTGGTTACTCTGAAGAAA CCTGAATTATCA TGGGTTGG TTTGGT TTGTGA TTAATGGAAATGGAAAA TTTGGGAACTGGGCT CTGAAAGAGGCAGA TTA TTAGAGTGGATCTTGTAGATATGTGGATTGAATTAAGTTAATACTGAATGGTGGATTATTTGATT CTTTACAATTTGTCTGCTTTCCTCAATCTGTAAATTGGAAGTATACTATTCAGATGGCGTAAATCTGAA                                                                    ]
[+] EMBL AU173011             [           GATCTCTCCCACACGGCTCAAACGCGCATACACGTAAACACACAAGCTTTGATCCTTCTGTTCGCCATGGACGGCGAGGCGACGAGCTTGATGATCTCGCCGGAGATCCGCGACGCGGTGACGAAGGTTGCCGTGTTCGTGCTGGTGCAGGCGCTGGTCTACCTCATCCTCCGCAGCTCGTCGAGCGTCTTCTCCAAGGACGGCAAGCTGAGGTCGTCCATGAGCTTCCGGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCGCCGC TCTCCGACGTCCCCGTCGGCACCGACGAGCCCTGGCCGTCGCCGTC GTCCTC GCC GTC GCC GACC T TGTC GC GCC G CTGGGCTAGCC GCC GCGAGGATTAATTGAA GCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAGCTAGGTGCTAGTTTGGTTACTC                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI802848             [                                                                                                                                                                                    TCCGCAGCTCGTCGAGCGTCTTCTCCAAGGACGGCAAGCTGAGGTCGTCCATGAGCTTCCGGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCGCCGC TCTCCGACGTCCCCGTCGGCACCGACGAGCCCTCGCCGTCGCCGTCAGTCCTCAGCCAGTCAGCCAGACCAT TGTCAGCAGCCAG CTGGGCTAGCCAGCCAGCGAGGATTAATTGAA GCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAGCTAGGTGCTAGTTTGGTTACTCTGAAGAAACCCTGAATTATCC TGGGTTGG TTTGGT TTGTGA TTAATGGAAATGGAAAA TTTGGGAACTGGGCTCCTGAAAGAGGCAGA TTA TTAGAGTGGATCTTGTAGATATGTGGATTGAATTAAGTTAATACTGAATGGTGGATTATTTGATT CTTTAAAAaaaaaa                                                                                                                           ]
[+] EMBL BI797271             [                                                                                                                                                                                                                         tCTGAGGTCGTCCATGAGCTTCCGGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCTCCGCTTCTCCGACGTCCCCTTCGGCGCCGACGAGCCCTCGCCGTCGCCGTC GTCCTC GCC GTC GCC GACC TGTGTC GC GCC GTCTGGGCTAGCC CCC GCGAGGATTAATTGAACGCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAGCTAGGTGCTAGTTTGGGTACTCTGAAGAAA CCTGAATTATCACTGGGTTGGCTTTGGTCTTGTGAGTTAATGGAAATGGAAAACTTTGGGAACTGGGCT CTGAAAGAGCCAGA TTA TTAGAGTGGATCTTGTAGATATGTGGATTGAATTAAGTTAATACTGAATGGTGGATTATTTGATTCCTTTAAAAaaaaaa                                                                                                                           ]
[+] EMBL AU030989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tccattggGGTTTGGTTTTGGT TTGTGA TNAATGGAAATGGAAAA TTTGGGAACTGGGCT CTGAAAGAGGCAGATTTATTTAGAGTGGATCTTGTAGATATGTGGATTGAATTAAGTTAATACTGAATGGTGGATTATTTGATT CTTTACAATTTGTCTGCTTTCCTCAATCTGTAAATTGGAAGTATACTATTCAGATGGCGTAAATCTGAAGTTCTTATGTACATGCTAATACAGGAGTATTATACTATACAGTACGAAGTATTGGATTGAGAAAAAAA]


>consensus_9366#0 AAGCTTTGATCGATCTCTCCCACACGGCTCAAACGCGCATACACGTAAACACACAAGCTT TGATCCTTCTGTTCGCCATGGACGGCGAGGCGACGAGCTTGATGATCTCGCCGGAGATCC GCGACGCGGTGACGAAGGTTGCCGTGTTCGTGCTGGTGCAGGCGCTGGTCTACCTCATCC TCCGCAGCTCGTCGAGCGTCTTCTCCAAGGACGGCAAGCTGAGGTCGTCCATGAGCTTCC GGTCGATGCGGTCCATGAGCGTCAGGCGCTTCCTCGCGCCGCTCTCCGACGTCCCCGTCG GCACCGACGAGCCCTGGCCGTCGCCGTCGTCCTCGCCGTCGCCGACCTTGTCGCGCCGCT GGGCTAGCCGCCGCGAGGATTAATTGAAGCGGTTAGTGCTAGCTTCTGGGCTCTGGCCAG CTAGGTGCTAGTTTGGTTACTCTGAAGAAACCTGAATTATCATGGGTTGGTTTGGTTTGT GATTAATGGAAATGGAAAATTTGGGAACTGGGCTCTGAAAGAGGCAGATTATTAGAGTGG ATCTTGTAGATATGTGGATTGAATTAAGTTAATACTGAATGGTGGATTATTTGATTCTTT ACAATTTGTCTGCTTTCCTCAATCTGTAAATTGGAAGTATACTATTCAGATGGCGTAAAT CTGAAGTTCTTATGTACATGCTAATACAGGAGTATTATACTATACAGTACGAAGTATTGG ATTGAGAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)