cluster # 937

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Oryza sativa
cluster # 937 cluster # 937 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_937#0 length = 1580 sequences # 1

consensus_937#1 length = 754 sequences # 1

consensusID : consensus_937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1580
fasta sequence

                              [CTGATGTATCTTGTACACGGTACACCCAAAGTTGCATTTCTTTGCTTTCTCCGTAGCCGGTGCACGTAGGTACGTATGCAAAGAAATTAGCAAGGTATAGAACGGTTCAACTTCTAATCCATTTGCTGGGCCGCTCTCGCTCTCAGTCTCACTCCAAGCTCCGATGCTCTCCCTCTCCACTCCGTCGTCGCCTCCGCCTCCTCTTCCTCCTCGCCGCGCCACCACCGCTCCCACCCCCGTCAGCCTCCTCCGCGGGGCAGCTGACCGGCGGGATGCGCCGCTCACCTCCGCGCTCCACGCTGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCTCTCCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTTCGTGGAACACCATGATCTCATGCCTGGTAAAGAGTGATCATGTGGATGAAGCCTTGGAGCTTTTTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCGTAGTGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGATGCTCCATGGATACATTATAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTATGCTAAGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGACATCGTTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCTCTAAGGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTTGTGAGTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTTCAAAGCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTTGATCTACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCTGTTCATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAACATTGATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATATGGAGAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAGATTAGGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGATGTAGGAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAGCAAATATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTACATCAATCGAGTCTAGTGAGTGTAATTAGTTGATGTCTCAATATACTCATATACACTGATTCTCTCTTTTAATTTAGTAATTTA]

[+] EMBL AK106401             [CTGATGTATCTTGTACACGGTACACCCAAAGTTGCATTTCTTTGCTTTCTCCGTAGCCGGTGCACGTAGGTACGTATGCAAAGAAATTAGCAAGGTATAGAACGGTTCAACTTCTAATCCATTTGCTGGGCCGCTCTCGCTCTCAGTCTCACTCCAAGCTCCGATGCTCTCCCTCTCCACTCCGTCGTCGCCTCCGCCTCCTCTTCCTCCTCGCCGCGCCACCACCGCTCCCACCCCCGTCAGCCTCCTCCGCGGGGCAGCTGACCGGCGGGATGCGCCGCTCACCTCCGCGCTCCACGCTGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCTCTCCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTTCGTGGAACACCATGATCTCATGCCTGGTAAAGAGTGATCATGTGGATGAAGCCTTGGAGCTTTTTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCGTAGTGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGATGCTCCATGGATACATTATAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTATGCTAAGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGACATCGTTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCTCTAAGGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTTGTGAGTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTTCAAAGCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTTGATCTACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCTGTTCATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAACATTGATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATATGGAGAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAGATTAGGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGATGTAGGAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAGCAAATATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTACATCAATCGAGTCTAGTGAGTGTAATTAGTTGATGTCTCAATATACTCATATACACTGATTCTCTCTTTTAATTTAGTAATTTA]




>consensus_937#0
CTGATGTATCTTGTACACGGTACACCCAAAGTTGCATTTCTTTGCTTTCTCCGTAGCCGG
TGCACGTAGGTACGTATGCAAAGAAATTAGCAAGGTATAGAACGGTTCAACTTCTAATCC
ATTTGCTGGGCCGCTCTCGCTCTCAGTCTCACTCCAAGCTCCGATGCTCTCCCTCTCCAC
TCCGTCGTCGCCTCCGCCTCCTCTTCCTCCTCGCCGCGCCACCACCGCTCCCACCCCCGT
CAGCCTCCTCCGCGGGGCAGCTGACCGGCGGGATGCGCCGCTCACCTCCGCGCTCCACGC
TGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCTCT
CCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAA
TGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTG
AGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTTCGT
GGAACACCATGATCTCATGCCTGGTAAAGAGTGATCATGTGGATGAAGCCTTGGAGCTTT
TTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCGTAG
TGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGATGCTCCATGGATACATTA
TAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTATGCTA
AGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGACATCG
TTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCTCTAA
GGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTTGTGA
GTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTTCAAA
GCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTTGATC
TACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCTGTTC
ATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAACATTG
ATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATATGGA
GAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAGATTA
GGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGATGTAG
GAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAGCAAA
TATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTACATC
AATCGAGTCTAGTGAGTGTAATTAGTTGATGTCTCAATATACTCATATACACTGATTCTC
TCTTTTAATTTAGTAATTTA

consensusID : consensus_937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence

                              [GCCACCCCTTTAAAGATGGACATGCTGACCCAGGATGCCGACGACGAGGACGGTGGCCTCCGCCCCAACGAGTTCACGGCGGCCGCTCTCCTTCAGGCTTGTGGGCTAGCCAAGGTCGCGAGGCTAGGGAGGATGGTGCATGGCCACCTCGTGACAAGTGGGTTTTGCTGTGACCCGTTTGTTGTTGGCTCGTTGGTCAATACGTACGCCAAGGTTGGGGATGTGGTGAGCGCAGAAAAGCTGCTTCTTGGAATGGATTCCAGGGATGTGGTTTCTTGGACTGCCCTGCTTTCAGGGTGCGTGCTTAATGGGATGCTAGCAGAAGCTCTCAAAGTGTTCGTCATGATGCTGGAGGATAACGTCCTTCCCAACAACGTTACAATGTTGAGTGTTATTCAGGCGTGCTCTTTGATGGGAGAGTCAGGATTGTTCAGTTCATTGCATGCGCTTGTTGTTCGCTTGGGGCTCGAGAATGATGTTTCAGTGGTGAATTCTCTCATCATAATGTATGCTAAGAATGGATTTGTTGAGGAGGCCACAGGTCTTTTTGAGGATTTGTACCTGAGGAGAGGAGATGTATGCCCTAATTCTGATGTTCTTTCTGCGCTTCTTTTTGGCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCAT]

[+] EMBL CB646263             [GCCACCCCTTTAAAGATGGACATGCTGACCCAGGATGCCGACGACGAGGACGGTGGCCTCCGCCCCAACGAGTTCACGGCGGCCGCTCTCCTTCAGGCTTGTGGGCTAGCCAAGGTCGCGAGGCTAGGGAGGATGGTGCATGGCCACCTCGTGACAAGTGGGTTTTGCTGTGACCCGTTTGTTGTTGGCTCGTTGGTCAATACGTACGCCAAGGTTGGGGATGTGGTGAGCGCAGAAAAGCTGCTTCTTGGAATGGATTCCAGGGATGTGGTTTCTTGGACTGCCCTGCTTTCAGGGTGCGTGCTTAATGGGATGCTAGCAGAAGCTCTCAAAGTGTTCGTCATGATGCTGGAGGATAACGTCCTTCCCAACAACGTTACAATGTTGAGTGTTATTCAGGCGTGCTCTTTGATGGGAGAGTCAGGATTGTTCAGTTCATTGCATGCGCTTGTTGTTCGCTTGGGGCTCGAGAATGATGTTTCAGTGGTGAATTCTCTCATCATAATGTATGCTAAGAATGGATTTGTTGAGGAGGCCACAGGTCTTTTTGAGGATTTGTACCTGAGGAGAGGAGATGTATGCCCTAATTCTGATGTTCTTTCTGCGCTTCTTTTTGGCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGCATGTATGCTAGATTTGAGCAAGTTGATGCAGCAT]




>consensus_937#1
GCCACCCCTTTAAAGATGGACATGCTGACCCAGGATGCCGACGACGAGGACGGTGGCCTC
CGCCCCAACGAGTTCACGGCGGCCGCTCTCCTTCAGGCTTGTGGGCTAGCCAAGGTCGCG
AGGCTAGGGAGGATGGTGCATGGCCACCTCGTGACAAGTGGGTTTTGCTGTGACCCGTTT
GTTGTTGGCTCGTTGGTCAATACGTACGCCAAGGTTGGGGATGTGGTGAGCGCAGAAAAG
CTGCTTCTTGGAATGGATTCCAGGGATGTGGTTTCTTGGACTGCCCTGCTTTCAGGGTGC
GTGCTTAATGGGATGCTAGCAGAAGCTCTCAAAGTGTTCGTCATGATGCTGGAGGATAAC
GTCCTTCCCAACAACGTTACAATGTTGAGTGTTATTCAGGCGTGCTCTTTGATGGGAGAG
TCAGGATTGTTCAGTTCATTGCATGCGCTTGTTGTTCGCTTGGGGCTCGAGAATGATGTT
TCAGTGGTGAATTCTCTCATCATAATGTATGCTAAGAATGGATTTGTTGAGGAGGCCACA
GGTCTTTTTGAGGATTTGTACCTGAGGAGAGGAGATGTATGCCCTAATTCTGATGTTCTT
TCTGCGCTTCTTTTTGGCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCAT
GCGCACTTGATTAAAATGAATGATTTGCCAAGCATTAGCATCGAAAACTCCCTGATGGGC
ATGTATGCTAGATTTGAGCAAGTTGATGCAGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_937#0      CTGATGTATCTTGTACACGGTACACCCAAAGTTGCATTTCTTTGCTTTCTCCGTAGCCGG 60
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      TGCACGTAGGTACGTATGCAAAGAAATTAGCAAGGTATAGAACGGTTCAACTTCTAATCC 120
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      ATTTGCTGGGCCGCTCTCGCTCTCAGTCTCACTCCAAGCTCCGATGCTCTCCCTCTCCAC 180
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      TCCGTCGTCGCCTCCGCCTCCTCTTCCTCCTCGCCGCGCCACCACCGCTCCCACCCCCGT 240
consensus_937#1      ----------------------------------------------------------GC 2
                                                                               * 

consensus_937#0      CAGCCTCCTCCGCG-GGGCA-GCTGACCGGCGGGATGCGCCGCTCACCTCCGCGCTCCAC 298
consensus_937#1      CACCCCTTTAAAGATGGACATGCTGACC--CAGGATGC------CGACGACGAGG---AC 51
                     ** **   *      ** ** *******  * ******      *  *  ** *    **

consensus_937#0      GCTGCCCTCCTCAAGTCCGGCGCGCTCGACCGTACCCAGCCTCTCACCGCGTCGAACTCT 358
consensus_937#1      GGTGGCCTCCGC---CCCAACGAGTTC-ACGGCGGCCGCTCTCCTTCAG----------G 97
                     * ** ***** *    **  ** * ** ** *   **   ***   * *           

consensus_937#0      CTCCTGCACTGTTTCAGGATCCTTGAAGTATGGAAAGGGAATCCATGCGCACTTGATTAA 418
consensus_937#1      CTTGTGGGCTAGCCAAGG--TCGCGAGGCTAGGGAGGATGGTGCATGGCCACCTCGTGAC 155
                     **  **  **     ***   *  ** *   ** * *    * ****  *** *  * * 

consensus_937#0      AATGAATGATTTGCCAAGCATTAGC-ATCGAAAACTCCCTGATGGGCATGTATGCTAGAT 477
consensus_937#1      AA-GTGGGTTTTGCTGTGACCCGTTTGTTGTTGGCTCGTTGGTCAATACGTACGCCAAGG 214
                     ** *   * *****   *         * *    ***  ** *    * *** ** *   

consensus_937#0      TTGAGCAAGTTGATGCAGCATATGTGGTGTTCAAAGGTATGCAAATTAAGGATATTGTTT 537
consensus_937#1      TTGGGGATGTGGTGAGCGCAGAAAAGCTGCTTCTTGGAATGGATTCCAGGGATGTGGTTT 274
                     *** * * ** *     *** *   * ** *    ** *** *    * **** * ****

consensus_937#0      CGTGGAACACCATGATCTCATGCCTGGTAAAGAGTGATCATGTGGATGAAGCCTTGGAGC 597
consensus_937#1      CTTGGACTGCCCTGCTTTCAGGGTGCGTGCTTAATGGGATGCTAGCAGAAGCTCTCAAAG 334
                     * ****   ** ** * *** *    **    * **      * *  *****  *  *  

consensus_937#0      TTTTTAGTATTCTTCATGGTGGTGATGGACTTGTGCCTGACTTTGTCACTGTCTTGAGCG 657
consensus_937#1      TGTTCGTCATGATGCTGGAGGATAACGTCCTT---CCCAACAACGTTACAATGTTGAGTG 391
                     * **    **  * *  *  * * * *  ***   **  **   ** **  * ***** *

consensus_937#0      TAGTGCAGGCATGTTCTAATGCTGGATTACTGCAGCAAGGGCAGAT-GCTCCATGGATAC 716
consensus_937#1      TTATTCAGGCGTGCTCTT-TGATGGGAGAGTCAGGATTGTTCAGTTCATTGCATGCGCTT 450
                     *  * ***** ** ***  ** ***   * *   *   *  *** *   * ****     

consensus_937#0      ATTATAAAGTCTGGATCTTTGTATGATGTCTCAATCTGCAATGCCCTGATAAGTATGTAT 776
consensus_937#1      GTTGTTCGCTTGGGGCTCGAGAATGATGTTTCAGTGGTGAATTCTCTCATCATAATGTAT 510
                      ** *    *  **      * ******* *** *    *** * ** ** *  ******

consensus_937#0      GCTAAGTTGGGAAGAATTGATTTCTCTGAGCAGATATTTGAGCAGATGGATATTAAGGAC 836
consensus_937#1      GCTAAGAATGGATTTGTTGAGGAGGCC--ACAGGTCTTTTTGAGGATTTGTACCTGAGGA 568
                     ******   ***    ****     *    *** * ***  *  ***   **     *  

consensus_937#0      ATCGTTTCGTGGAACTCAATGATCAATGCTTATGGTATTCATGGAGATGGGCTATCATCT 896
consensus_937#1      GAGGAGATGTATGCCCTAATT-CTGATGTTCTTTCTGCGCTTCTTTTTGG-CTGCACTGT 626
                        *    **    *  ***     *** *  *  *   * *     *** **    * *

consensus_937#0      CTAAGGATTTTTAATGAGCTGCAGGATGATGGAACATGTTCACCCAATGCTATCACATTT 956
consensus_937#1      TTCAGGATCCTTGAAG---TATGGAAAGGGAATCCATGCGCACTTGAT----TAAAATGA 679
                      * *****  ** * *   *   * * *      ****  ***   **    * * **  

consensus_937#0      GTGAGTCTGATATCGGCTTGCAGTCATTCTGGTTTGGTTTCAGAAGGCTACAGATGCTTT 1016
consensus_937#1      ATGA-TTTGCCAAGCATTAGCA-------TCGAAAACTCCCTGATGGGCATGTATGCT-- 729
                      *** * **  *     * ***       * *     *  * ** **  *   *****  

consensus_937#0      CAAAGCATGAAAAACGACTACAGAATTGAGCCTAGCATGGATCATTATGCTTCTGTAGTT 1076
consensus_937#1      -AGATTTGAGCAAGTTGATGCAGCAT---------------------------------- 754
                      * *       **     * *** **                                  

consensus_937#0      GATCTACTTGGAAGATCTGGGAGGTTTGCTGAGGCAGAACAATTTATCAGAAACATGCCT 1136
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      GTTCATCCCAATTCATCCATTTGGGGACCTCTTCTGGCTGCTTGCTCTCTTTACGGGAAC 1196
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      ATTGATCTTGCAGAAAAAGCTGCTATAGAATTGTCAATCTTGGAACCGGAGAGTGACATA 1256
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      TGGAGAGTCTCCTTGTCAAATGTCTATGCCGTTGTTGGGAGATGGAAGGACTCTGCAAAG 1316
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      ATTAGGACTGAAATGAAGAGAGTTGGCTTGAAAAAGGAAGCGGGGTGGAGTTTTGTAGAT 1376
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      GTAGGAGGGGTCGAAGGTTTTAAGTTTGTGGCAGCAGATACAAGGCACGGCGACTCTGAG 1436
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      CAAATATATGCAGTATTGCGCAGTATGAACAAACACATGGCAGATGTAGCTGGTGATGTA 1496
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      CATCAATCGAGTCTAGTGAGTGTAATTAGTTGATGTCTCAATATACTCATATACACTGAT 1556
consensus_937#1      ------------------------------------------------------------
                                                                                 

consensus_937#0      TCTCTCTTTTAATTTAGTAATTTA 1580
consensus_937#1      ------------------------