These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 702 fasta sequence [GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCTGCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTGGAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGAGGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA] [+] EMBL AU068826 [GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCTGCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTGGAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCT ] [+] EMBL AU082308 [ GAACGCGTGGNTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGAGGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA] consensusID : consensus_9370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 436 fasta sequence [ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANT-CGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGC-TGCCTCCAGA-TGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAGGCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAACGATTCTCTTTCAATT] [+] EMBL AU095288 [ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANT CGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGC TGCCTCCAGA TGNCCGCCGTCTC ] [+] EMBL C72106 [ CGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANTCCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTTGCCTCCAGATTGCCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAGGCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAACGATTCTCTTTCAATT] consensusID : consensus_9370#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCGCACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU070978 [ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCGCACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9370#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCCGCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU031192 [GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCCGCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9370#2 ------------------------------------------------------------ consensus_9370#3 ------------------------------------------------------------ consensus_9370#0 GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCT 60 consensus_9370#1 ------------------------------------------------------------ consensus_9370#2 ------------------------------------------------------------ consensus_9370#3 ------------------------------------------------------------ consensus_9370#0 GCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTG 120 consensus_9370#1 ------------------------------------------------------------ consensus_9370#2 ------------------------------------------------------------ consensus_9370#3 ------------------------------------------------------------ consensus_9370#0 GAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACA 180 consensus_9370#1 ------------------------------------------------------------ consensus_9370#2 ------------------------------------------------------------ consensus_9370#3 ------------------------------------------------------------ consensus_9370#0 TCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGG 240 consensus_9370#1 -ACAAGGGAAACCCTCGCCGACGG-ACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGG 58 consensus_9370#2 ----------------ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACC 44 consensus_9370#3 ----------------------------------------------------GTCCTACC 8 consensus_9370#0 CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT 300 consensus_9370#1 CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT 118 * * consensus_9370#2 AGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNT--CCTCGCCGCGCNCCGC-C 101 consensus_9370#3 NGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGT--CCTC--TGCCNTCCGCGT 64 consensus_9370#0 GGCTGTTCGTCCGCTCCGACGAGAT-CCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAG 359 consensus_9370#1 GGCTGTTCGTCCGCTCCGACGAGAT-CCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAG 177 * **** *** * * **** ******* * ** ** * consensus_9370#2 TCGCCA-GGNGGCCATNGCGCA----------CGCCGCCCNCCGACNAGCCGGCTCCAAC 150 consensus_9370#3 TCGCCA-GGAGGCCATGGCGCAGC--------CGCCGCCCGCCNACGAGCCGGNTCCAAC 115 consensus_9370#0 AAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTAC 419 consensus_9370#1 AAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTAC 237 * ** ** ** ** * **** * * * * ** consensus_9370#2 NCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTC--ATTTTTTTTTCTCCTGCAAA 208 consensus_9370#3 GCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNC--ATTTTTTTTTCTCCTGCAAA 173 consensus_9370#0 AGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTAC 479 consensus_9370#1 AGCCCCGACGACTTCGCGCAN-TCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTAC 296 * *** * * * ** ** * * * * * ** * * consensus_9370#2 TTTGT--GTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTT---GCTTGAATA- 262 consensus_9370#3 TTTGT--GTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTT---GCTTGAATA- 227 consensus_9370#0 CTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCG-TCCGCGCTCGCCA- 537 consensus_9370#1 CTCGTCGGCTGCCTCCAGATGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAA 356 * ** * *** * ** * * * * ** * * * consensus_9370#2 TGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAA 322 consensus_9370#3 TGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAA 287 consensus_9370#0 GGAGGCNATGGCG-CAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACA 596 consensus_9370#1 GGAGGCATTGGCGACGGCCG--GCCCGCCGACGAGCCGGTTCAAAGGCAAC-GGGGGANA 413 ** * * * * * ** * * ** * * * consensus_9370#2 AAAAAAAAAAAAAAAA-------------------------------------------- 338 consensus_9370#3 AAAAAAAAAAAAA----------------------------------------------- 300 consensus_9370#0 AGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAAC 656 consensus_9370#1 AT--NTTAACGA--TTCTCTTTCAATT--------------------------------- 436 * * consensus_9370#2 ---------------------------------------------- consensus_9370#3 ---------------------------------------------- consensus_9370#0 ATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA 702 consensus_9370#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||