cluster # 9370

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Oryza sativa
cluster # 9370 cluster # 9370 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9370#0 length = 702 sequences # 2
consensus_9370#1 length = 436 sequences # 2

consensus_9370#2 length = 338 sequences # 1
consensus_9370#3 length = 300 sequences # 1

consensusID : consensus_9370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 702
fasta sequence

                              [GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCTGCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTGGAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGAGGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA]

[+] EMBL AU068826             [GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCTGCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTGGAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCT                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU082308             [                                                                                                                                                                                                                                                                                                    GAACGCGTGGNTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGAGGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA]




>consensus_9370#0
GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCT
GCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTG
GAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACA
TCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGG
CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT
GGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGA
AGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACA
GCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACC
TCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGA
GGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTG
ATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTG
GTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA

consensusID : consensus_9370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence

                              [ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANT-CGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGC-TGCCTCCAGA-TGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAGGCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAACGATTCTCTTTCAATT]

[+] EMBL AU095288             [ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANT CGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGC TGCCTCCAGA TGNCCGCCGTCTC                                                                                                            ]
[+] EMBL C72106               [                                              CGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANTCCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTTGCCTCCAGATTGCCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAGGCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAACGATTCTCTTTCAATT]




>consensus_9370#1
ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCG
GCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGG
CTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAG
GAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGC
CCCGACGACTTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCG
TCGGCTGCCTCCAGATGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAG
GCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAA
CGATTCTCTTTCAATT

consensusID : consensus_9370#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCGCACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU070978             [ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCGCACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9370#2
ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTG
CCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCG
CACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCT
CTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAA
AACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTG
CAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9370#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCCGCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031192             [GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCCGCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9370#3
GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCC
GCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNC
CGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGT
TGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCT
TCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCT 60
consensus_9370#1      ------------------------------------------------------------
                                                                                  

consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      GCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTG 120
consensus_9370#1      ------------------------------------------------------------
                                                                                  

consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      GAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACA 180
consensus_9370#1      ------------------------------------------------------------
                                                                                  

consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      TCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGG 240
consensus_9370#1      -ACAAGGGAAACCCTCGCCGACGG-ACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGG 58
                                                                                  

consensus_9370#2      ----------------ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACC 44
consensus_9370#3      ----------------------------------------------------GTCCTACC 8
consensus_9370#0      CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT 300
consensus_9370#1      CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT 118
                                                                          *  *    

consensus_9370#2      AGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNT--CCTCGCCGCGCNCCGC-C 101
consensus_9370#3      NGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGT--CCTC--TGCCNTCCGCGT 64
consensus_9370#0      GGCTGTTCGTCCGCTCCGACGAGAT-CCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAG 359
consensus_9370#1      GGCTGTTCGTCCGCTCCGACGAGAT-CCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAG 177
                       *    ****  *** *  * **** *******   *     **     **      *  

consensus_9370#2      TCGCCA-GGNGGCCATNGCGCA----------CGCCGCCCNCCGACNAGCCGGCTCCAAC 150
consensus_9370#3      TCGCCA-GGAGGCCATGGCGCAGC--------CGCCGCCCGCCNACGAGCCGGNTCCAAC 115
consensus_9370#0      AAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTAC 419
consensus_9370#1      AAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTAC 237
                        *    **  **    ** **           * ****  *      * * *     **

consensus_9370#2      NCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTC--ATTTTTTTTTCTCCTGCAAA 208
consensus_9370#3      GCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNC--ATTTTTTTTTCTCCTGCAAA 173
consensus_9370#0      AGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTAC 479
consensus_9370#1      AGCCCCGACGACTTCGCGCAN-TCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTAC 296
                        * ***  *     * *     **  **  *   * *     *    * ** *    * 

consensus_9370#2      TTTGT--GTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTT---GCTTGAATA- 262
consensus_9370#3      TTTGT--GTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTT---GCTTGAATA- 227
consensus_9370#0      CTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCG-TCCGCGCTCGCCA- 537
consensus_9370#1      CTCGTCGGCTGCCTCCAGATGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAA 356
                       * **  * ***    * **      *   *     * *    ** *      *    * 

consensus_9370#2      TGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAA 322
consensus_9370#3      TGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAA 287
consensus_9370#0      GGAGGCNATGGCG-CAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACA 596
consensus_9370#1      GGAGGCATTGGCGACGGCCG--GCCCGCCGACGAGCCGGTTCAAAGGCAAC-GGGGGANA 413
                       ** *      *  *        *  *  ** *    *     **    *       * *

consensus_9370#2      AAAAAAAAAAAAAAAA-------------------------------------------- 338
consensus_9370#3      AAAAAAAAAAAAA----------------------------------------------- 300
consensus_9370#0      AGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAAC 656
consensus_9370#1      AT--NTTAACGA--TTCTCTTTCAATT--------------------------------- 436
                      *      *                                                    

consensus_9370#2      ----------------------------------------------
consensus_9370#3      ----------------------------------------------
consensus_9370#0      ATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA 702
consensus_9370#1      ----------------------------------------------