cluster # 9371

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Oryza sativa
cluster # 9371 cluster # 9371 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9371#0 length = 871 sequences # 5

consensus_9371#1 length = 371 sequences # 1

consensusID : consensus_9371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 871
fasta sequence

                              [GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA-CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTA-CAGC-TTTGGAGCT-CTCTACTTTGT-CGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTGGATTTTGAGAGCACTCATAAGCCGGAGCA-CAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAG-GCAGCAGAAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCTGCCNTCTTGCTTCGTAACTTGACCAAAAAAA]

[+] EMBL AK110750             [GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTA CAGC TTTGGAGCT CTCTACTTTGT CGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTGGATTTTGAGAGCACTCATAAGCCGGAGCA CAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAG GCAGCAGAAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTT                                                     ]
[+] EMBL AU031216             [                                                          TGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTACCAGCTTTTGGAGCTCCTCTANTTTGTCCGAGGTTGANATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI118802             [                                                          TGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTAGTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACCGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAna                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI118775             [                                                          TGCTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGCATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTANTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTACTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATA CGAAAATGCAGTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM419342             [                                                                                                                                                                                                                                                                                                                                         tcCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTA CAGC TTTGGAGCT CTCTACTTTGT CGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTGGATTTTGAGAGCACTCATAAGCCGGAGCACCAGGGTTCGGAGCAGATTGCCCTCTACTGAGCCTTGAGCCCTTGACAGCTCCAGTTTTACCCTTGTGCAGTGTACTGAAATTCTGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGNGCAGCAGAAGGCTTATGGTTACACGTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCTGCCNTCTTGCTTCGTAACTTGACCAAAAAAA]




>consensus_9371#0
GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATG
CTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGC
ATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTA
GTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTA
CTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGTTACACTG
GTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCAC
GATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTT
GTCGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGT
GAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTG
GATTTTGAGAGCACTCATAAGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTACTGAG
CCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTG
TAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACAC
GTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGT
GAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCT
GCCNTCTTGCTTCGTAACTTGACCAAAAAAA

consensusID : consensus_9371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTGGATTTTGAGNGCACTCATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAGCCTTGAGCCCTTGACAGCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACACGTACACGGTNACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031217             [AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTGGATTTTGAGNGCACTCATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAGCCTTGAGCCCTTGACAGCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTGTAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACACGTACACGGTNACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9371#1
AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTGGATTTTGAGNGCACTC
ATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAGCCTTGAGCCCTTGACA
GCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTGTAGTACAGTCTTCCAC
TGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACACGTACACGGTNACGGTA
GGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGTGAAATAATACTGGATT
CGCCATTTGGTGCGTTTCCTTTTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9371#0      GAGAACAAGGCGGGAGAGAAGATGACACCGGAGCAGTTGATATGGTTGTACTCGATCATG 60
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      CTTTCAGCAACTGTGGTGAAACTTGCCCTCTACATATACTGCAGAAGCTCAGGGAATAGC 120
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      ATTGTCCAGGCATATGCAAAGGACCATTACTTCGATGTCGTAACCAATGTTGTTGGTTTA 180
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GTGGCTGCTGTGCTTGGAGATAAGTTCTTCTGGTGGATTGACCCAGTAGGGGCTGTGCTA 240
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      CTTGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGTTACACTG 300
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCAC 360
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GATCCACGTGTGAGGCGGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTT 420
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GTCGAGGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGT 480
consensus_9371#1      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTGCTTTTGTTCATGTG 540
consensus_9371#1      ----------------AGATCGNGAAGCTTCCNGAAGTTGAGCTTGCTTTTGTTCATGTG 44
                                      ****** ********* ********** ****************

consensus_9371#0      GATTTTGAGAGCACTCATAAGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTACTGAG 600
consensus_9371#1      GATTTTGAGNGCACTCATANGCCGGAGCACAGGGTTCGGAGCAGATTGCCCTCTANTGAG 104
                      ********* ********* *********************************** ****

consensus_9371#0      CCTTGAGCCCTTGACAGCTCCAGTTTTACTCTTGTGCAGTGTACTGAAATTCCGGTACTG 660
consensus_9371#1      CCTTGAGCCCTTGACAGCNCCAGTTTTACTCTTGTGCAGTNTACTGAAATTCTGGTACTG 164
                      ****************** ********************* *********** *******

consensus_9371#0      TAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACAC 720
consensus_9371#1      TAGTACAGTCTTCCACTGGTTTGGTTTGTCGCTGAGGCAGCAGAAGGCTTATGGTTACAC 224
                      ************************************************************

consensus_9371#0      GTACACGGTGACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGT 780
consensus_9371#1      GTACACGGTNACGGTAGGTCGGTAGCTGGCTTTTGGGTAGAGGAATCTGTATGTCTGAGT 284
                      ********* **************************************************

consensus_9371#0      GAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCCTTTTGGCTGGCCT 840
consensus_9371#1      GAAATAATACTGGATTCGCCATTTGGTGCGTTTCCTTTTTTGTTTCA----AAAAAAAAA 340
                      **********************************************              

consensus_9371#0      GCCNTCTTGCTTCGTAACTTGACCAAAAAAA 871
consensus_9371#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 371
                                     **    *  *******