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Oryza sativa
cluster # 9372 cluster # 9372       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9372#0 length = 785 sequences # 5  
consensus_9372#1 length = 564 sequences # 1  

consensusID : consensus_9372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 785
fasta sequence
                              [AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT-CCATGCCAATGCCAAGAGTCAGTG-TTTCATCGGTAGAGCTAGAG-AAGAAGATAGGTTTT-CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAAGAAACTAAAAAA]

[+] EMBL CA764215             [AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTT GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGNGATGATACTAAATATATCTATATTTTCAGGTAATTTTGGTGTAAAAANTAGCTATCTTTTGGTGCTGAATGAACAAGGCCGGCGNTTAATTT                                  ]
[+] EMBL AU031230             [                           CCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTGTTTTCATCGGTAGAGCTAGAGNAGGAAGATAGGTTTTCCGAATCAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU095353             [                                   AAATAGCTAGCAGCTGGTCTCTCTCTTGATTTGTGTTT CGGAG AAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAGGGAAGGATNAGAAGAAAGCAACNACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATGTTACAAAGTCAA TGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGG GTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCT ACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCT                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU031231             [                                                                                                                                                                                                                                                            cCAAGGTATCTCAGGANCCTGAACAGCTGGGCNGCACTAGCAGTTCCCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAA                    ]
[+] EMBL AU031410             [                                                                                                                                                                                                                                                                      TCAGGAGCNTGAACAGCTGGGCAGCACTAGCAGTT CCATGCCAATGCCAAGAGTCAGTG TTTCATCGGTAGAGCTAGAG AAGAAGATAGGTTTT CGAATCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCGAGGAGCTTGGCCNCGACGTCCTTGATGCT ACGTGTCGTGCGCAGACGACACCGCTTTTCGTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAATGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGATCCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTGATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAATATTCGTGCAAAGAAACTAAAAAA]


>consensus_9372#0 AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTC TTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAG GGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATG TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCA AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA TGCCAATGCCAAGAGTCAGTGTTTCATCGGTAGAGCTAGAGAAGAAGATAGGTTTTCGAA TCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCG AGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTC GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAA TGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGAT CCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTG ATGATACTAAATATATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCTATCTTTTG GTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAAGAAACTA AAAAA



consensusID : consensus_9372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence
                              [AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCAGGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCAGTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTACTTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGCGCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATATTCGTGCAAAGAATCTAAATTGTA]

[+] EMBL AK062951             [AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCAGGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATGCCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCAGTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTACTTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGCGCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATATTCGTGCAAAGAATCTAAATTGTA]


>consensus_9372#1 AGCAGCTGGTCTCTCTCTTGATTTGTGTTTCCCCAGAGAGAGATCTAGGGAGAGATGTCA GGGAAAGATCAAAAGAAAGCAGCAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTGTT ACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCAAA GAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCATG CCAATGCCAAGAAGTGAAGCTGCAGAGAGAAGCGTGGATGAGCAAATGGTTCGGCATGCA GTGCTGCAAGCCATCAAGAAATGCATGGACGGATCATCAATTTGATCCAGAATGAACTAC TTTATGTTTAGTTCTAAAAAAAGTACTTTATGTTTCGACTTAATACTCATCTGCCGTAGC GCAAGCTTATTGTGAGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTG TAAAAATTTGCTCATCTCTTGGTGCTGAATGAACAAGAACGGCGTTTTGTCGTTTAAATA TTCGTGCAAAGAATCTAAATTGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9372#0      AGGGGGATCTATATATGATCGAGATGCCCCTTACAAAGTAGCTAGCAGCTGGTCTCTCTC 60
consensus_9372#1      -------------------------------------------AGCAGCTGGTCTCTCTC 17
                                                                 *****************

consensus_9372#0      TTGATTTGTGTTTCCGGAGAAAGAGAGAGATCGGGGTCGAGATCGAGGGAGAGATGTCAG 120
consensus_9372#1      TTGATTTGTGTTTCCCCAGAGAGAGA----------------TCTAGGGAGAGATGTCAG 61
                      ***************  *** *****                ** ***************

consensus_9372#0      GGAAGGATCAGAAGAAAGCAACAACAGCTTTAGAAGAGAAGCTCGAGCTCCTACGTGATG 180
consensus_9372#1      GGAAAGATCAAAAGAAAGCAGCA---GCTTTAGAAGAGAAGCTCGAGCTCCTACGTTCTG 118
                      **** ***** ********* **   ******************************  **

consensus_9372#0      TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTTGTAGATGCGTCCAAGTACATCA 240
consensus_9372#1      TTACAAAGTCAAGTGCGGCAAACGAGACATCAATCCTCGTAGATGCGTCCAAGTACATCA 178
                      ************************************* **********************

consensus_9372#0      AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA 300
consensus_9372#1      AAGAGCTCAAGGACAAGGTATCTCAGGAGCCTGAACAGCTGGGCAGCACTAGCAGTTCCA 238
                      ************************************************************

consensus_9372#0      TGCCAATGCCAAGAGTCAGTGTTTCATCGGTAGAGCTAGAGAAGAAGATAGGTTTTCGAA 360
consensus_9372#1      TGCCAATGCCAAGAA--------------GTGAAGCTGCAGA------------------ 266
                      **************               **  ****  ***                  

consensus_9372#0      TCAATGTGTCAATGGAGAAGAGTCAGCCTGAGTTGCTGACGTCGGTGTTAGAAGCATTCG 420
consensus_9372#1      -----------------------------------------------------------G 267
                                                                                 *

consensus_9372#0      AGGAGCTTGGCCTCGACGTCCTTGATGCTGACGTGTCGTGCGCAGACGACACCGCTTTTC 480
consensus_9372#1      AGAAGCGTGG---------------------------ATGAGCAAATGG--------TTC 292
                      ** *** ***                            ** *** * *         ***

consensus_9372#0      GTCTTGAAGCGCTTGGATCCAGCCAAAGTGAAGCTGCAGAGACAAGCGTGGATGAGCAAA 540
consensus_9372#1      GGCATGCAGTGCT--------GC-------AAGCCATCAAGAAATGCATGGACGGATCAT 337
                      * * ** ** ***        **       ****     *** * ** **** *    * 

consensus_9372#0      TGGTTCGTCATGCAGTGCTGCAAGCCATCAAGAAATGCATTGACGGATCATCAATTTGAT 600
consensus_9372#1      CAATTTG---------------ATCCAGAATGAACTACTTT-----ATGTTTAGTTCTA- 376
                         ** *               * ***  * *** * * **     **  * * **  * 

consensus_9372#0      CCAGAATGAATTTTATGTTTCGACTTAAATTCTCATCTGCCGTAGCGCAAACTTATTGTG 660
consensus_9372#1      -AAAAAAGTACTTTATGTTTCGACTTAA-TACTCATCTGCCGTAGCGCAAGCTTATTGTG 434
                        * ** * * ***************** * ******************* *********

consensus_9372#0      ATGATACTAAATA------TATCTATATTTTCAGTTAATTTTGTTGTAAAAATTAGCT-A 713
consensus_9372#1      AGGATACTAAATAGTATACTATCTATATTTTCAGTTAATTTTGTTGTAAAAATTTGCTCA 494
                      * ***********      *********************************** *** *

consensus_9372#0      TCTTTTGGTGCTGAATGAACAAGGGCGGCGTTTAATTTGTCGTTTAAAAAAACGTGCAAA 773
consensus_9372#1      TCTCTTGGTGCTGAATGAACAAGAACGGCGT----TTTGTCGTTTAAATATTCGTGCAAA 550
                      *** *******************  ******    ************* *  ********

consensus_9372#0      GAAACTAAAAAA-- 785
consensus_9372#1      GAATCTAAATTGTA 564
                      *** *****     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)