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Oryza sativa
cluster # 9373 cluster # 9373       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9373#0 length = 731 sequences # 1  
consensus_9373#1 length = 702 sequences # 5  

consensusID : consensus_9373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence
                              [CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAAACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCCCGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTTTNNCGGNGCNN]

[+] EMBL BE229290             [CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAAACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCCCGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTTTNNCGGNGCNN]


>consensus_9373#0 CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGT CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG ATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAA ACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCC CGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGC GTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACA CCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAA ANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGG TATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTT TNNCGGNGCNN



consensusID : consensus_9373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 702
fasta sequence
                              [GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC-TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG-TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAAAAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA]

[-] EMBL CF196045             [GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATANCNTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCT                                                                                                                 ]
[-] EMBL CF299011             [                                                         TCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAAAAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA]
[-] EMBL BI795175             [                                                                             tttttTTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAA TTG TGGCTCACTCAGAACATAC TTGGTAATTCATATTTGGCACCTCGTTTCATCGTAGCAAA TGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCG TTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTAGTTA TGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGG CGGTCAGACGCTCATGAGTGAGAGCGA CTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCG                                                                                                      ]
[-] EMBL AU031685             [                                                                           tttttttTTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGNACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGNCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGNTTGAGTT                                                                                                                                                                                                                                                                            ]
[-] EMBL OSR05301A            [                                                                                                                                                                                                                                                                               AATTGNCATGTCAGAATTTGATACAATGATTCCGGCACTGNGCTACTAGCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCANCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGNCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAA NTGGCGCGGCTTCTGGCGTGTGGATT                                                                                  ]


>consensus_9373#1 GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCA AGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCA AGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAA TTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAA TTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGAT TCCGGCACTGTCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAG CGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACG CATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTT CAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGC CGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCG CGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAA AAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9373#0      CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGT 60
consensus_9373#1      --GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGT 58
                        *     ***************** ************* ********************

consensus_9373#0      CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG 120
consensus_9373#1      CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG 118
                      ************************************************************

consensus_9373#0      CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA 180
consensus_9373#1      CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA 178
                      ************************************************************

consensus_9373#0      AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT 240
consensus_9373#1      AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT 238
                      ************************************************************

consensus_9373#0      AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG 300
consensus_9373#1      AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG 298
                      ************************************************************

consensus_9373#0      ATTCCGGC-CTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGA 359
consensus_9373#1      ATTCCGGCACTGTCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGA 358
                      ******** ************************ **************************

consensus_9373#0      AACGCATCCCAAATCCCTTTCTGCCC-CCATAATGTGGAACA-TGTCCCAAATTCCCCCC 417
consensus_9373#1      AGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCA 418
                      * ************* ********** ************ ** ******* * * *  * 

consensus_9373#0      C---CCCGTTTGAATTGT-TTGTTGTAATG--CTGAAAGTGCCCCCANGGCTGGGCTTTC 471
consensus_9373#1      CGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTT 478
                      *    * ****** **** ******* **    ***  ****  *** **** **  ** 

consensus_9373#0      CCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCT 531
consensus_9373#1      TTCAGCTTC--TTGCTGTTATCATCGGTTTTAGGT----GTGGATCCGGCGCAA------ 526
                        *  ** *     * ***    * ** *   *       ****      ****      

consensus_9373#0      AATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCC 591
consensus_9373#1      ------------CCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCC 574
                                  ***  **  **  ***  * * ** **  *  ***  * * ** * **

consensus_9373#0      AATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTT 651
consensus_9373#1      CCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCT-------GGCGTGTGGA------TTG 621
                        *  * **   *    *  *   *  **  ***        **    **       ** 

consensus_9373#0      NCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAAC 711
consensus_9373#1      GCGGCTGCGGGTTCGGGGGAGAGGACG-ATGCGAGAGAAAAAGCGGTGGATTAAAAGGGG 680
                       *   *  *  ***   **    * *   * *     **    *        *  *    

consensus_9373#0      GAA---CAANTTTNNCGGNGCNN 731
consensus_9373#1      GGATTTCTACTCCTTCAGTCCA- 702
                      * *   * * *    * *  *  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)