These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAAACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCCCGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTTTNNCGGNGCNN] [+] EMBL BE229290 [CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCCTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGAAACGCATCCCAAATCCCTTTCTGCCCCCATAATGTGGAACATGTCCCAAATTCCCCCCCCCCGTTTGAATTGTTTGTTGTAATGCTGAAAGTGCCCCCANGGCTGGGCTTTCCCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCTAATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCCAATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTTNCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAACGAACAANTTTNNCGGNGCNN] consensusID : consensus_9373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 702 fasta sequence [GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC-TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG-TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAAAAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA] [-] EMBL CF196045 [GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGTCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATANCNTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCT ] [-] EMBL CF299011 [ TCAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCTGGCGTGTGGATTGGCGGCTGCGGGTTCGGGGGAGAGGACGATGCGAGAGAAAAAGCGGTGGATTAAAAGGGGGGATTTCTACTCCTTCAGTCCA] [-] EMBL BI795175 [ tttttTTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAA TTG TGGCTCACTCAGAACATAC TTGGTAATTCATATTTGGCACCTCGTTTCATCGTAGCAAA TGTCATGTCAGAATTTGATACAATGATTCCGGCACTG TCCACTATCG TTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTAGTTA TGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGG CGGTCAGACGCTCATGAGTGAGAGCGA CTTCCCCCTGGGGAAGCTTCTGGAAGCTGGCG ] [-] EMBL AU031685 [ tttttttTTAAAGTGCGAACAATATCTTCATTCAAATTTCGAGCAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCAAATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGTAATTCATATTTGGCACCTC TTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATGATTCCGGNACTG TCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCATCCCAAATCTCTTTCTGNCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCACGCATCTGNTTGAGTT ] [-] EMBL OSR05301A [ AATTGNCATGTCAGAATTTGATACAATGATTCCGGCACTGNGCTACTAGCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGAAGCGCANCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGNCCCAGAATTCATCACGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTTTTCAGCTTCTTGCTGTTATCATCGGTTTTAGGTGTGGATCCGGCGCAACCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCCCCTGGGGAAGCTTCTGGAA NTGGCGCGGCTTCTGGCGTGTGGATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9373#0 CGGGGCTCACTGTTATTGATGTAGTCTTACAGCCCAATAAAGTGTATACAGGAGTCAGGT 60 consensus_9373#1 --GNNNNNACTGTTATTGATGTAGTATTACAGCCCAATANAGTGTATACAGGAGTCAGGT 58 * ***************** ************* ******************** consensus_9373#0 CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG 120 consensus_9373#1 CAAGATGATATAGGAGTACCAGAATTAAAGTGCGAACAATATCTTCATTCAAATTTCGAG 118 ************************************************************ consensus_9373#0 CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA 180 consensus_9373#1 CAAGTCAAAGACTGATGTCAGTGAACAAATGAGATTTACATAATTTACATGGGCCCTTCA 178 ************************************************************ consensus_9373#0 AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT 240 consensus_9373#1 AATTATATTACTTAGCCTTCCCTGATCAAATTTGTTGGCTCACTCAGAACATACTTTGGT 238 ************************************************************ consensus_9373#0 AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG 300 consensus_9373#1 AATTCATATTTGGCACCTCTTTCATCGTAGCAAATTGTCATGTCAGAATTTGATACAATG 298 ************************************************************ consensus_9373#0 ATTCCGGC-CTGTCCACTATCGTTTGTGCAAGAAATAACTCAGCTTCTGCAGCAGCTCGA 359 consensus_9373#1 ATTCCGGCACTGTCCACTATCGTTTGTGCAAGAGATAACTCAGCTTCTGCAGCAGCTCGA 358 ******** ************************ ************************** consensus_9373#0 AACGCATCCCAAATCCCTTTCTGCCC-CCATAATGTGGAACA-TGTCCCAAATTCCCCCC 417 consensus_9373#1 AGCGCATCCCAAATCTCTTTCTGCCCACCATAATGTGGAGCAGTGTCCCAGAATTCATCA 418 * ************* ********** ************ ** ******* * * * * consensus_9373#0 C---CCCGTTTGAATTGT-TTGTTGTAATG--CTGAAAGTGCCCCCANGGCTGGGCTTTC 471 consensus_9373#1 CGCATCTGTTTGAGTTGTGTTGTTGTTATTGCTTGATTGTGCTTCCAAGGCTTGGGCTTT 478 * * ****** **** ******* ** *** **** *** **** ** ** consensus_9373#0 CCCCCCTGCGTNCNCCGTTTANGTTGGATCCGGCCACCCNTGGAANGNNGGCAAACCCCT 531 consensus_9373#1 TTCAGCTTC--TTGCTGTTATCATCGGTTTTAGGT----GTGGATCCGGCGCAA------ 526 * ** * * *** * ** * * **** **** consensus_9373#0 AATTAAACACCTCCCCCGGGAACCCCCGAACGGCCGGTCCGGNTTGAATGGGGCCCTNCC 591 consensus_9373#1 ------------CCCATGGCGACGGCCGGTCAGACGCTCATGAGTGAGAGCGACCTTCCC 574 *** ** ** *** * * ** ** * *** * * ** * ** consensus_9373#0 AATTNGCAAANCTNGCAATCCNCNCCNGGGATCTTTTCAAANGCCCCCGGGAACCCCTTT 651 consensus_9373#1 CCTGGGGAAGCTTCTGGAAGCTGGCGCGGCTTCT-------GGCGTGTGGA------TTG 621 * * ** * * * * ** *** ** ** ** consensus_9373#0 NCCTATAGGTATTCACNGGTACNGCCACGTTCCCNTTAATTTCCCCCNTCCCANNAAAAC 711 consensus_9373#1 GCGGCTGCGGGTTCGGGGGAGAGGACG-ATGCGAGAGAAAAAGCGGTGGATTAAAAGGGG 680 * * * *** ** * * * * ** * * * consensus_9373#0 GAA---CAANTTTNNCGGNGCNN 731 consensus_9373#1 GGATTTCTACTCCTTCAGTCCA- 702 * * * * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||