cluster # 9380

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Oryza sativa
cluster # 9380 cluster # 9380 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9380#0 length = 923 sequences # 3

consensus_9380#1 length = 430 sequences # 2
consensus_9380#2 length = 175 sequences # 1

consensusID : consensus_9380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 923
fasta sequence

                              [CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATTGTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAACAAGTCCTTCCGCTACGTTGATT]

[+] EMBL AK069388             [CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATTGTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAACAAGTCCTTCCGCTACGTTGATT]
[+] EMBL AU183693             [    CCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BP184807             [       ACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAGGGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGGCATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACCCTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGGTGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAACTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAACGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGATCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCC                                                                                                                                                                                                                                                                                                                         ]




>consensus_9380#0
CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAG
GGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGG
CATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACC
CTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGG
TGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAA
CTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAA
CGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGA
TCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAG
CCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGG
GGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCAC
GGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTA
CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC
AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT
AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATT
GTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAA
CAAGTCCTTCCGCTACGTTGATT

consensusID : consensus_9380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence

                              [CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU173265             [CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAGCCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACGGAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031885             [                                                                                                    CGTGCTNTGGGGTGGGTGGGGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCNACGACGTCGNACCTGTGCACGGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAAAAAAAAAAAA]




>consensus_9380#1
CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAGC
CCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGGG
GCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCACG
GAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTAC
ATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACA
GCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTA
AATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAAA
AAAAAAAAAA

consensusID : consensus_9380#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [CACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTAAAAAAAAAAAAA]

[+] EMBL CA756263             [CACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTAAAAAAAAAAAAA]




>consensus_9380#2
CACTACATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGA
TGCACAGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAA
TACTTAAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      CTCGCCGACGCCATTGATGCTTTACAAGCGTTGGTGAGAGGCCAGGAGAGGCGTGGAGAG 60
                                                                                  

consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      GGAGAGTTATGAGCGCAAGGACATTACGACAAGATCGTTATTCCTAATGGGTGAGATAGG 120
                                                                                  

consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      CATAAACGATTACAACCACCACTTCTTCCAGAACAGATCCTTCACAGCTGAGATCAAACC 180
                                                                                  

consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      CTTAGTGCCACTAGTGATTTTAAAGATTGAAAATGCCACCAAGGTTTTGATCGACCTTGG 240
                                                                                  

consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      TGCCAAGACCATACTGGTTCCAGGGATCCCGCCAATGGGCTGCATTCCGAGGTTTCTCAA 300
                                                                                  

consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      CTTGCTCCCTAGCAAGAACCACAATGACTATGACAAGCTTGGATGTCTGAAGTGGCTGAA 360
                                                                                  

consensus_9380#1      ------------------------------------------------------------
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      CGACTTCTCTCAGTACCACAATCGTGCTCTCAAACAAATGTTACAGAGGATTCATCATGA 420
                                                                                  

consensus_9380#1      -CCTACCGTCACCCTAATNTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTNGAAG 59
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      TCCTACCGTCACCCTAATCTATGCCGACTACTATGGAGCAATGTTGAAGATAGTTCGAAG 480
                                                                                  

consensus_9380#1      CCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTNTGAGGGCGTGCTGTGGGGTGGGTGG 119
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      CCCTCAGAACAATGGGTTCACGAAGGAGAGCGTTCTGAGGGCGTGCTGTGGGGTGGGTGG 540
                                                                                  

consensus_9380#1      GGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCAC 179
consensus_9380#2      ------------------------------------------------------------
consensus_9380#0      GGCCTACAACGCCGACTCGCTGGTGTGCAACGGCAACGCCACGACGTCGAACCTGTGCAC 600
                                                                                  

consensus_9380#1      GGAGCCGTCCAGGTACATNTCCTGGGACGGCCTGCATNTCACCGAGGCCGCCTACCACTA 239
consensus_9380#2      -------------------------------------------------------CACTA 5
consensus_9380#0      GGAGCCGTCCAGGTACATCTCCTGGGACGGCCTGCATCTCACCGAGGCCGCCTACCACTA 660
                                                                             *****

consensus_9380#1      CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC 299
consensus_9380#2      CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC 65
consensus_9380#0      CATCGCCCGCGGCGTGCTGCATGGGCCGTACACCGAGCCTGCCATACCCACCAGATGCAC 720
                      ************************************************************

consensus_9380#1      AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT 359
consensus_9380#2      AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT 125
consensus_9380#0      AGCCTGATCATACCCACACATTACACCTTGTTTATCCCAGATGTATAACCAGAAATACTT 780
                      ************************************************************

consensus_9380#1      AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAAAAAAAA 419
consensus_9380#2      AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTA-------------AAAAAAAAA 172
consensus_9380#0      AAATTTAAAACGGATGCAAAATTAGTAAATTACCTTTATACTCCCTTTGCTAAGTTGATT 840
                      **************************************             **    *  

consensus_9380#1      AAAAAAAAAAA------------------------------------------------- 430
consensus_9380#2      AAA--------------------------------------------------------- 175
consensus_9380#0      GTTTGAATTTTCACTTTGATTTGTACATTTTTTTAAACTACTAGACGATGTTTTATAAAA 900
                                                                                  

consensus_9380#1      -----------------------
consensus_9380#2      -----------------------
consensus_9380#0      CAAGTCCTTCCGCTACGTTGATT 923