|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1015 fasta sequence
[GGGCTCCCGGAGCTCCACTTGTAGCTGCACCTCCTGTTCCNTCTCCTCCTCTCTCTCTCTCTCTCTCCTCCCCCGCTTCCATGGCGAGGTGGCNGGATATTGGCGACCACGAAGCCGAGCCGNCCCCTTCCTCTCGCTGCTCCTCCTCGCGCCGCTCGTCTTCACAGTCTCCAGGCTGCAGCTGAGCTGGTCGCCGGAGAAGGGCCTGTGCCTTCCGCCGCCCGCCGCGCCGGAGGGGCGGCGCCAATGCCTGCCT-CCGCCCACCGCGCCGAGGCTG-CCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGGACTAAAAGCTGTTAATAAGATTGGATTATCAAGTGAAAGAAATTATTCCAGGGGGCATGTTACTTTTGTTACAGTATTCACGACATACAACTCTGATCCAGCTGAAGCAAGCAAACTCCCATCTAATGTTGTCACAGTTGGAAAGCATTCTTATAGCAAGGTGGGAAGGTCCATGGCTATCCTCAACACTTTCATTGGTTTCATACAGGTGTCAATGCCAAGAAGCAACGTGATCATATTGACCGATCCTAATTCAAAGTTAACTCATGGGAGTGCTGTGATATTGCCTATTGAAGGAAATTATTCTCGAGGAAACTTGATGTTTCAGAGGATCAGGTCCTACATAGCCTTTCTGGAGCAAAGACTTGAGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAGTGGTTACTGATCTTGGACATATATTCGAGATGTATCCTCATTGTCACCTTGCTCTTACTTTTCGAAATAACAAAGGCCAGCCTTTGAATTCTGGATTTGTAGCAGTAAGAGGAACCAGGGATGGCATTTTTAAGGCTATTGAATTCTTCANAGAAGTCCTTGAGGCATACTACTTGAAGTATATGGAGGCTTCCCGCATGCTTGGTGATCAATTAGCACTGGCATGGGTTGTGAAGTCC]
[+] EMBL AU222839 [GGGCTCCCGGAGCTCCACTTGTAGCTGCACCTCCTGTTCCNTCTCCTCCTCTCTCTCTCTCTCTCTCCTCCCCCGCTTCCATGGCGAGGTGGCNGGATATTGGCGACCACGAAGCCGAGCCGNCCCCTTCCTCTCGCTGCTCCTCCTCGCGCCGCTCGTCTTCACAGTCTCCAGGCTGCAGCTGAGCTGGTCGCCGGAGAAGGGCCTGTGCCTTCCGCCGNCCGCCGNGCCGGAGGGGCGGNGCCAATGCCTGCCTCCCGCCCACCGCGCCGAGGCTGNACGCGGCCGGATCGC ]
[+] EMBL CB655472 [ CTCTCGCTGCTCCTCCTCGCGCCGCTCGTCTTCACAGTCTCCAGGCTGCAGCTGAGCTGGTCGCCGGAGAAGGGCCTGTGCCTTCCGCCGCCCGCCGCGCCGGAGGGGCGGCGCCAATGCCTGCCT CCGCCCACCGCGCCGAGGCTG CCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGGACTAAAAGCTGTTAATAAGATTGGATTATCAAGTGAAAGAAATTATTCCAGGGGGCATGTTACTTTTGTTACAGTATTCACGACATACAACTCTGATCCAGCTGAAGCAAGCAAACTCCCATCTAATGTTGTCACAGTTGGAAAGCATTCTTATAGCAAGGTGGGAAGGTCCATGGCTATCCTCAACACTTTCATTGGTTTCATACAGGTGTCAATGCCAAGAAGCAACGTGATCATATTGACCGATCCTAATTCAAAGTTAACTCATGGGAGTGCTGTGATATTGCCTATTGAAGGAAATTATTCTCGAGGAAACTTGATGTTTCAGAGGATCAGGTCCTACATAGCCTTTCTGGAGCAAAGACTTGAGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAGTGGTTACTGATCTTGGACATATATTCGAGATGTATCCTCATTGTCACC ]
[+] EMBL CB667875 [ GCCTGTGCCTTCCGCCGCCCGCCGCGCCGGAGGGGCGGCGCCAATGCCTGCCT CCGCCCACCGCGCCGAGGCTG CCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGGACTAAAAGCTGTTAATAAGATTGGATTATCAAGTGAAAGAAATTATTCCAGGGGGCATGTTACTTTTGTTACAGTATTCACGACATACAACTCTGATCCAGCTGAAGCAAGCAAACTCCCATCTAATGTTGTCACAGTTGGAAAGCATTCTTATAGCAAGGTGGGAAGGTCCATGGCTATCCTCAACACTTTCATTGGTTTCATACAGGTGTCAATGCCAAGAAGCAACGTGATCATATTGACCGATCCTAATTCAAAGTTAACTCATGGGAGTGCTGTGATATTGCCTATTGAAGGAAATTATTCTCGAGGAAACTTGATGTTTCAGAGGATCAGGTCCTACATAGCCTTTCTGGAGCAAAGACTTGAGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAGTGGTTACTGATCTTGGACATATATTCGAGATGTATCCTCATTGTCACCTTGCTCTTACTTTTCGAAATAACAAAGGCCAGCCTTTGAATTCTGGATTTGTAGCAGTAAGAGGAACCAGGGATGGCATTTTTAAGGCTATTGAATTCTTCANAGAAGTCCTTGAGGCATACTACTTGAAGTATATGGAGGCTTCCCGCATGCTTGGTGATCAATTAGCACTGGCATGGGTTGTGAAGTCC]
consensusID : consensus_9392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence
[TTTTTTTTTTTGGCAAAAGTCTCCAATTTTGTGTGTATTTTCTGAATATACGTCAGCACCGCCACGTACGGTCTACACAAGTACACATCAGCGCGCGCGAAGGTAAAATTTCTAGCCCCCCTCTCAATCATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAAGAAACACCAAAGCAATTGTTGGTGGATTTCCAACACAACCATGAATGCACAGTGTATGATGTTGTTGCTTGTAAGGGAGCTATCCAGACCAATTTCGATCACATCTACTGCTTTTTTGTTTTGCATCATACTCTATTTTGTACANCGNCTGAATTCTTGTACCGGCTCAGGAATGCAGGATTGAAGGCCTCACATCAAAATTGATTTGGCGTCATGCTCAGCACTAGAACCCCCTAGAGTTCTTGAAAAGAGTCCCCAGTCCTTTTGGCCAAACTCAACTGTTGCAATAACACAAACGTAAAATTCACTAGTGTAGCTTCACTTGAACTCTAGGTTCAGAAGTCGTATTTTGTTCTACCACTTCTTAAAATTAGGCACAACATATCAGATAATTCAGAGGTTGAGTTGTAGAAATTCCATGCTTCAAGCATCAAACGCTTCCTTGAACCCTTGAAATGGACAACCTTTACATCCAATGGCATACCATGGAACTGTCCAGCACCTTCAGGTGGTGTCCAATTATAAACTGCACAAGGCAAAAAGAGAATAGATGTTCCATTCACTTCACCTGTAAATGCCTCATGCTTAGAAAATTTTGAAAAAGCAGATGGTAGATAGGACTTCACAACCCATGCCAGTGCTAATTG]
[-] EMBL AU032820 [TTTTTTTTTTTGGCAAAAGTCTCCAATTTTGTGTGTATTTTCTGAATATACGTCAGCACCGCCACGTACGGTCTACACAAGTACACATCAGCGCGCGCGAAGGTAAAATTTCTAGCCCCCCTCTCAATCATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAAGAAACACCAAAGCAATTGTTGGTGGATTTCCAACACAACCATGAATGCACAGTGTATGATGTTGTTGCTTGTAAGGGAGCTATCCAGACCAATTTCGATCACATCTACTGCTTTTTTGTTTTGCATCATACTCTATTTTGTACANCGNCTGAATTCTTGTACCGGCTCAGGAATGCAGGATTGAAGGCCTCACATCAAAATTG ]
[+] EMBL CB667876 [ AGTCTCCAATTTTGTGTGTATTTTCTGAATATACGTCAGCACCGCCACGTACGGTCTACACAAGTACACATCAGCGCGCGCGAAGGTAAAATTTCTAGCCCCCCTCTCAATCATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAAGAAACACCAAAGCAATTGTTGGTGGATTTCCAACACAACCATGAATGCACAGTGTATGATGTTGTTGCTTGTAAGGGAGCTATCCAGACCAATTTCGATCACATCTACTGCTTTTTTGTTTTGCATCATACTCTATTTTGTACACCGCCTGAATTCTTGTACCGACTCAGAAATGCAGAGTTGAA GCCTCACATC AAATTGATTTGGCGTCATGCTCAGCACTAGAACCCCCTAGAGTTCTTGAAAAGAGTCCCCAGTCCTTTTGGCCAAACTCAACTGTTGCAATAACACAAACGTAAAATTCACTAGTGTAGCTTCACTTGAACTCTAGGTTCAGAAGTCGTATTTTGTTCTACCACTTCTTAAAATTAGGCACAACATATCAGATAATTCAGAGGTTGAGTTGTAGAAATTCCATGCTTCAAGCATCAAACGCTTCCTTGAACCCTTGAAATGGACAACCTTTACATCCAATGGCATACCATGGAACTGTCCAGCACCTTCAGGTGGTGTCCAATTATAAACTGCACAAGGCAAAAAGAGAATAGATGTTCCATTCACTTCACCTGTAAATGCCTCATGCTTAGAAAATTTTGAAAAAGCAGATGGTAGATAGGACTTCACAACCCATGCCAGTGCTAATTG]
consensusID : consensus_9392#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[TTTTTTTTTTTTTTTAGTCTCCAATTTTGTGTGTATTTTCTGAATATACGTCAGCACCGCCACGTACGGTCTACACAAGTACACATCAGCGCGCGCGAAGGTAAAATTTCTAGCCCCCCTCTCAATCATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAAGAAACACCAAAGCAATTGTTGGTGGATTTCCAACACAACCATGAATGCACAGTGTATGATGTTGTTGCTTGTAATTGGGCTTTTTTGTTTTGCATCATACTCTATTTTGTACACCGCCTGAATTCTTGTACCGACTCAAAAATGCAGAGTTGAAGCCTCACATCAAATTGATTTGGCGTCATGCTCAGCACTAGAACCCCCTAGAGTTCTTGAAAAGAGTCCCCAGTCCTTTTGGGCAAACTCAACTGTTGCAATAACACAAACGTAAAATTCACTAGTGTAGCTTCACTTGAACTCTAGGTTCAGAAGTCGTATTTTGTTCTACCACTTCTTANAATTAGGCACAACATATCAAATAATTCAGAGGTTGAGTTGTAGAAATTCCATGCTTCAAGCATCANACGCTTCCTTGAACCCTTGAAATGGACAACCTTTACATCCAATGGCATACCATGGAACTGTCCAGCACCTTCAGGTGGTGTCCAATTA]
[+] EMBL CA762193 [TTTTTTTTTTTTTTTAGTCTCCAATTTTGTGTGTATTTTCTGAATATACGTCAGCACCGCCACGTACGGTCTACACAAGTACACATCAGCGCGCGCGAAGGTAAAATTTCTAGCCCCCCTCTCAATCATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAAGAAACACCAAAGCAATTGTTGGTGGATTTCCAACACAACCATGAATGCACAGTGTATGATGTTGTTGCTTGTAATTGGGCTTTTTTGTTTTGCATCATACTCTATTTTGTACACCGCCTGAATTCTTGTACCGACTCAAAAATGCAGAGTTGAAGCCTCACATCAAATTGATTTGGCGTCATGCTCAGCACTAGAACCCCCTAGAGTTCTTGAAAAGAGTCCCCAGTCCTTTTGGGCAAACTCAACTGTTGCAATAACACAAACGTAAAATTCACTAGTGTAGCTTCACTTGAACTCTAGGTTCAGAAGTCGTATTTTGTTCTACCACTTCTTANAATTAGGCACAACATATCAAATAATTCAGAGGTTGAGTTGTAGAAATTCCATGCTTCAAGCATCANACGCTTCCTTGAACCCTTGAAATGGACAACCTTTACATCCAATGGCATACCATGGAACTGTCCAGCACCTTCAGGTGGTGTCCAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9392#1 --------------------------------------------------TTTTTTTTTT 10
consensus_9392#2 ----------------------------------------------------TTTTTTTT 8
consensus_9392#0 GGGCTCCCGGAGCTCCACTTGTAGCTGCACCTCCTGTTCCNTCTCCTCCTCTCTCTCTCT 60
* * * *
consensus_9392#1 TGGCAAAAGTCTCCAATTTTGTG-TGTATTTTCTGAATATACGTCAGCACCGCCACGTAC 69
consensus_9392#2 TTTTTTTAGTCTCCAATTTTGTG-TGTATTTTCTGAATATACGTCAGCACCGCCACGTAC 67
consensus_9392#0 CTCTCTCCTCCCCCGCTTCCATGGCGAGGTGGCNGGATATTGGCGACCACGAAGCCGAGC 120
* ** ** ** * * * * **** * * *** ** *
consensus_9392#1 GGTCTACACAAGTACACATCAGCGCG-CGCGAAGGTAAAATTTCTAGCCCCCCTCTCAAT 128
consensus_9392#2 GGTCTACACAAGTACACATCAGCGCG-CGCGAAGGTAAAATTTCTAGCCCCCCTCTCAAT 126
consensus_9392#0 CGNCCCCTTCCTCTCGCTGCTCCTCCTCGCGCCGCTCGTCTTCACAGTCTCCAGGCTG-- 178
* * * * * * * * **** * * ** ** * **
consensus_9392#1 CATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAA 188
consensus_9392#2 CATTTTAATCCTTTACCAAGACATTGGCACAAGGGGGTGACCAAACTAATCCTCTCAAAA 186
consensus_9392#0 CAGCTGAGCTGGTCGCCG-GAGAAGGGCCTGTGCCTTCCGCCGCCCGCCGCGCCGGAGGG 237
** * * * ** ** * *** * ** * * * *
consensus_9392#1 GAAACACCAAAGCAATTGTTGGTGGATTTC--CAACACAACCATG-----AATGCACAGT 241
consensus_9392#2 GAAACACCAAAGCAATTGTTGGTGGATTTC--CAACACAACCATG-----AATGCACAGT 239
consensus_9392#0 GCGGCGCCAATGCCTGCCTCCGCCCACCGCGCCGAGGCTGCCGCGGCCGGATCGCCTCGT 297
* * **** ** * * * * * * * ** * * ** **
consensus_9392#1 GTATGATGTTGTTGCTTGTAAGGGA-GCTATCCAGACCAATTTCGATCACATCTACTGCT 300
consensus_9392#2 GTATGATGTTGTTGCTTGTAATTGG-GCT------------------------------- 267
consensus_9392#0 GCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGGACTAAAAGC 357
* ** * ** * * * **
consensus_9392#1 TTTTTGTT---TTGCATCAT----------ACTCTATTTTGTACANCGNCTGAATTCTTG 347
consensus_9392#2 TTTTTGTT---TTGCATCAT----------ACTCTATTTTGTACACCGCCTGAATTCTTG 314
consensus_9392#0 TGTTAATAAGATTGGATTATCAAGTGAAAGAAATTATTCCAGGGGGCATGTTACTTTTGT 417
* ** * *** ** ** * **** * * * ** *
consensus_9392#1 TACCG-GCTCAGGA-ATGCAGGATTGAAGGCCTCACATCAAAA-----TTGATTTGGCGT 400
consensus_9392#2 TACCG-ACTCAAAA-ATGCAGAGTTGAAG-CCTCACATCAAA------TTGATTTGGCGT 365
consensus_9392#0 TACAGTATTCACGACATACAACTCTGATCCAGCTGAAGCAAGCAAACTCCCATCTAATGT 477
*** * *** * ** ** *** * *** ** * **
consensus_9392#1 CATGCTCAGCACTAGAAC-CCCCTAGAGTTCTTGAAAAGAGTCCCCAGTCCTTTTGGCCA 459
consensus_9392#2 CATGCTCAGCACTAGAAC-CCCCTAGAGTTCTTGAAAAGAGTCCCCAGTCCTTTTGGGCA 424
consensus_9392#0 TGT-CACAGTTGGAAAGCATTCTTATAGCAAGGTGGGAAGGTCCATGGCTATCCTCAACA 536
* * *** * * * * ** ** * **** * * * **
consensus_9392#1 AACTCAACTGTTGCAA--------TAACACAAACGTAAAATTCACTAGTGTAGCTTCACT 511
consensus_9392#2 AACTCAACTGTTGCAA--------TAACACAAACGTAAAATTCACTAGTGTAGCTTCACT 476
consensus_9392#0 CTTTCATTGGTTTCATACAGGTGTCAATGCCAAGAAGCAACGTGATCATATTGACCGATC 596
*** *** ** ** * ** ** * * * * *
consensus_9392#1 TGAACTCTAGGTTCAGAAGTCGTATT-TTGTTCTACCACTTCTTAAA----ATTAGGCAC 566
consensus_9392#2 TGAACTCTAGGTTCAGAAGTCGTATT-TTGTTCTACCACTTCTTANA----ATTAGGCAC 531
consensus_9392#0 CTAATTCAAAGTTAACTCATGGGAGTGCTGTGATATTGCCTATTGAAGGAAATTATTCTC 656
** ** * *** * * * * * *** ** * * ** * **** * *
consensus_9392#1 AAC-ATATCAGATAATTCAGAGGTTGAGTT-----GTAGAAATTCCATGCTTCAAGCATC 620
consensus_9392#2 AAC-ATATCAAATAATTCAGAGGTTGAGTT-----GTAGAAATTCCATGCTTCAAGCATC 585
consensus_9392#0 GAGGAAACTTGATGTTTCAGAGGATCAGGTCCTACATAGCCTTTCTGGAGCAAAGACTTG 716
* * * ** ******** * ** * *** *** * * *
consensus_9392#1 AAACGCTTCC-----TTGAACCCTTGAAATGGACAACCTTTACATCCAATGGCATACCAT 675
consensus_9392#2 ANACGCTTCC-----TTGAACCCTTGAAATGGACAACCTTTACATCCAATGGCATACCAT 640
consensus_9392#0 AGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAG 776
* **** * *** * ** ** ** ** ** *** **
consensus_9392#1 GGA--ACTGTCCA-----GCACCTTCAGGTGGTGTCCA-ATTATAAACTGCACAAGGCAA 727
consensus_9392#2 GGA--ACTGTCCA-----GCACCTTCAGGTGGTGTCCA-ATTA----------------- 675
consensus_9392#0 TGGTTACTGATCTTGGACATATATTCGAGATGTATCCTCATTGTCACCTTGCTCTTACTT 836
* **** * * *** * ** *** ***
consensus_9392#1 AAAGAGAATAGATGTTCCATTCACTTCACCTGTAAATGCCTCATGCTTAGAAAATTTTGA 787
consensus_9392#2 ------------------------------------------------------------
consensus_9392#0 TTCGAAATAACAAAGGCCAGCC-TTTGAATTCTGGATTTGTAGCAGTAAGAGGAACCAGG 895
consensus_9392#1 AAAAGCAGATGGTAGATAG--GACTTCACAACCCATGCCAGTGCTAATTG---------- 835
consensus_9392#2 ------------------------------------------------------------
consensus_9392#0 GATGGCATTTTTAAGGCTATTGAATTCTTCANAGAAGTCCTTGAGGCATACTACTTGAAG 955
consensus_9392#1 ------------------------------------------------------------
consensus_9392#2 ------------------------------------------------------------
consensus_9392#0 TATATGGAGGCTTCCCGCATGCTTGGTGATCAATTAGCACTGGCATGGGTTGTGAAGTCC 1015
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||