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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1553 fasta sequence
[CGAGGCGACATCTCACCTCCTCGGCCGCCGGCCATGGCGACAATCTCCGCGACTCTCTCCATCTCCTTCCTCCCTTCATCAATTCGCTTCGCCGTCGCCACCACCTCCACCTCCACTACCTCCTCCTCCTCCTCCTGGCGTATCAAGCGACCCGCGCGGTTCAGATGCTGCGCGGAGCCCTCTTCACCGGAGCAGGAGAACCCCTCGACTCCGGCCCCGCCACCAGTGAAGCCTCCTGCGTCGCCGTCGTCCCTGTGGGGCATTTCCACGAGCACCTGGTCTGCGGGTGTCGCCGGGCTGGGGTTTCTGGAGACCGCCTACCTCAGTTATATCAAGCTCACGGGCTCCGAGGCGTTCTGCCCGGTTAGCGGCGGGGGCTGCGGCGACGTGCTCCAAAGCGACTACTCTGTCGTCTTCGGGATTCCTCTTCCACTACTTGGTCTGGTGGCATATGGTTTGGTTTTAACGCTCTCTCTTCAAGAAAATGGGAAGAATTTCCTCCCTGGAATTGATGATCTGGATATTCGTTTAACATTACTTCTGATCTCTACTTCAATGGCCACTGCAAGTTCTTATTTCCTATATATTCTAAACACTAGATTTATTGGGACGTCTTGTTCATACTGCTTGTTGTCTGCATTTCTCTCCTTCACTTTATTTTCCATCAGAGTTAAGGACCTCGGTTTGGAACGTGTCCAGAAGTTTGTTGGTCTTCAATTATCAGTAGCAATTATTGTTGCTCTTGCTCTGACAAATTCCTACAGTTCAGCTACAACACAGTTAAACGGCACAGATGATTTTGTTTTAGAACGATATGATACAGAGATAACAACCGAATCAACCCCATTTGCTATTGCACTTGCAAAACATTTGCACTCTGTTGGCGCTAAGATGTATGGAGCATTCTGGTGTTCTCATTGTAACGAACAAAAACAGATTTTTGGTCGAGAAGCTACAAAAATTCTGGACTATGTTGAATGTTTTCCTAATGGAGCTGGCAAGGGAAAGAAAATGGCTCCTGAATGTGCAGCTGCTGGTATAGAAGGTTTTCCGACATGGATTATCAACGGCAAGGTTTTGGGTGGCGACCAGGAACTTCCAATCCTTGCTGAAG-AATCTGGTTTCACTGTTGAGGGAA-CCGAGCAATCATAAGGTCAGACACGAGAGCAAGTTTCATTCAATTGAAGGCGAGTGTTTTATGGTTTTAGTGAAGAACTCAGGTTGTGAAGGCTGACTACAACAATTCCGCATGACATACCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCTAACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAGAAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAAATGTAAAAGGGCGCATTGCTTCTCTTCCTAGGTACATAATGTAATGTATAATACCTTGCAATGTGATATTTGTACAGAAAAGTGTATTGTTCAGGCAGTTAATGAGTAGGCAGTTG]
[+] EMBL AK109755 [CGAGGCGACATCTCACCTCCTCGGCCGCCGGCCATGGCGACAATCTCCGCGACTCTCTCCATCTCCTTCCTCCCTTCATCAATTCGCTTCGCCGTCGCCACCACCTCCACCTCCACTACCTCCTCCTCCTCCTCCTGGCGTATCAAGCGACCCGCGCGGTTCAGATGCTGCGCGGAGCCCTCTTCACCGGAGCAGGAGAACCCCTCGACTCCGGCCCCGCCACCAGTGAAGCCTCCTGCGTCGCCGTCGTCCCTGTGGGGCATTTCCACGAGCACCTGGTCTGCGGGTGTCGCCGGGCTGGGGTTTCTGGAGACCGCCTACCTCAGTTATATCAAGCTCACGGGCTCCGAGGCGTTCTGCCCGGTTAGCGGCGGGGGCTGCGGCGACGTGCTCCAAAGCGACTACTCTGTCGTCTTCGGGATTCCTCTTCCACTACTTGGTCTGGTGGCATATGGTTTGGTTTTAACGCTCTCTCTTCAAGAAAATGGGAAGAAGTTCCTCCCTGGAATTGATGATCTGGATATTCGTTTAACATTACTTCTGATCTCTACTTCAATGGCCACTGCAAGTTCTTATTTCCTATATATTCTAAACACTAGATTTATTGGGACGTCTTGTTCATACTGCTTGTTGTCTGCATTTCTCTCCTTCACTTTATTTTCCATCAGAGTTAAGGACCTCGGTTTGGAACGTGTCCAGAAGTTTGTTGGTCTTCAATTATCAGTAGCAATTATTGTTGCTCTTGCTCTGACAAATTCCTACAGTTCAGCTACAACACAGTTAAACGGCACAGATGATTTTGTTTTAGAACGATATGATACAGAGATAACAACCGAATCAACCCCATTTGCTATTGCACTTGCAAAACATTTGCACTCTGTTGGCGCTAAGATGTATGGAGCATTCTGGTGTTCTCATTGTAACGAACAAAAACAGATTTTTGGTCGAGAAGCTACAAAAATTCTGGACTATGTTGAATGTTTTCCTAATGGAGCTGGCAAGGGAAAGAAAATGGCTCCTGAATGTGCAGCTGCTGGTATAGAAGGTTTTCCGACATGGATTATCAACGGCAAGGTTTTGGGTGGCGACCAGGAACTTCCAATCCTTGCTGAAG AATCTGGTTTCACTGTTGAGGGAA CCGAGCAATCATAAGGTCAGACACGAGAGCAAGTTTCATTCAATTGAAGGCGAGTGTTTTATGGTTTTAGTGAAGAACTCAGGTTGTGAAGGCTGACTACAACAATTCCGCATGACATACCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCTAACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAGAAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAAATGTAAAAGGGCGCATTGCTTCTCTTCCTAGGTACATAATGTAATGTATAATACCTTGCAATGTGATATTTGTACAGAAAAGTGTATTGT ]
[+] EMBL CB635614 [ cacgaggCCTCCTCCTTGCGTATCAAGCGACCCGCGCGGTTCAGATGCTGCGCGGAGCCCTCTTCACCGGAGCAGGAGAACCCCTCGACTCCGGCCCCGCCACCAGTGAAGCCTCCTGCGTCGCCGTCGTCCCTGTGGGGCATTTCCACGAGCACCTGGTCTGCGGGTGTCGCCGGGCTGGGGTTTCTGGAGACCGCCTACCTCAGTTATATCAAGCTCACGGGCTCCGAGGCGTTCTGCCCGGTTAGCGGCGGGGGCTGCGGCGACGTGCTCCAAAGCGACTACTCTGTCGTCTTCGGGATTCCTCTTCCACTACTTGGTCTGGTGGCATATGGTTTGGTTTTAACGCTCTCTCTTCAAGAAAATGGGAAGAATTTCCTCCCTGGAATTGATGATCTGGATATTCGTTTAACATTACTTCTGATCTCTACTTCAATGGCCACTGCAAGTTCTTATTTCCTATATATTCTAAACACTAGATTTATTGGGACGTCTTGTTCATACTGCTTGTTGTCTGCATTTCTCTCCTTCACTTTATTTTCCATCAGAGTTAAGGACCTCGGTTTGGAACGTGTCCAGAAGTTTGTTGGTCTTCAATTATCAGTAGCAATTATTGTTGCTCTTGCTCTGACAAATTCCTACAGTTCAGCTACAACACAGTTAAACGGCACAGATGATTTTGTTTTAGAACGATATGATACAGAGATAACAACCGAATCAACCCCATTTGCTATTGCACTTGCAAAACATTTGCACTCTGTTGGCGCTAAGATGTATGGAGCATTCTGGTGTTCTCATTGTAACGAACAAAAACAGATTTTTGGTCGAGAAGC ]
[+] EMBL CA767587 [ GACGTGCTCCAAAGCGACTACTCTGTCGTCTTCGGGATTCCTCTTCCGCTACTTGGTCTGGTGGCATATGGTTTGGTTCTAACGCTCTCTCTTCAAGAAAATGGGAAGAATTTCCTCCCTGGAATTGATGATCTGGATATTCGTTTAACATTACTTCTGATCTCTACTTCAATGGCCACTGCAAGTTCTTATTTCCTATATATTCTAAACACTAGATTTATTGGGACGTCTTGTTCATACTGCTTGTTGTCTGCATTTCTCTCCTTCACTTTATTTTCCATCAGAGTTATGGACCTCGGTTTGGAACGTGTCCAGAAGTTTGTTGGTCTTCAATTATCAGTAGCAATTATTGTTGCTCTTGCTCTGACGAATTCCTACAGTTCAGCTACAACACAGTTAAACGGCACAGATGATTTTGTTTTAGAACGATATGATACAGAGATAACAACCGAATCAACCCCATTTGCTATTGCACTTGCAAAACATTTGCACTCTGTTGGCGCTAAGATGTATGGAGCATTCTGGTGTTCTCATTGTAACGAACAAAAACAGATTTTTGGTCGAGAAGCTACAAAAATTCTGGACTATGNTGAATGNTTTCCTAATGGAGCTGGCAAGGGAAAGAAAATGGCTCCTGAATGTGCAGCTGCTGGTATAGAAGGNTTTCCGACATGGATTATCAACGGCAAGGNTTTGGGTGGCGACCAGGAACTTNCAATCCTTGCTGAAGAAATCTGGNTTCACTGGTGAGGGAACCCGAGCAATCATAAGGTCAGACACGAGAGCAAGGTTCATTCAATTGAAGGCGAGNGGTTTATGGGTTTAGNGNANAACTCAGGTTGNGAAGGCTGACTACAACA ]
[+] EMBL OSS15096A [ GATATTCGTTTAACATTACTTCTGATCTCTACTTCAATGGCCACTGCAAGNTCTTATTTCCTATATATTCTAAACACTAGATTTATTGGGACGTCTTGTTCATACTGCTTGTTGTCTGCATNTCTCTCCTTCACTNTATTNTCCATCAGAGTTAAGGACCTCGGTTTGGAACGTGTCCAGAAGTTTGTTGGTCTTCAATNATCAGTAGCA ]
[-] EMBL CB635615 [ CAATTATTGTTGCTCTTGCTCTGACAAATTCNTACAGTTCAGCTACAACACAGTTAAACGGCACAGATGATTTTGTTTTAGAACGATATGATACAGAGATAACAACCGAATCAACCCCATTTGCTATTGCACTTGCAAAACATTTGCACTCTGTTGGCGCTAAGATGTATGGAGCATTCTGGTGTTCTCATTGTAACGAACAAAAACAGATTTTTGGTCGAGAAGCTACAAAAATTCTGGACTATGTTGAATGTTTTCCTAATGGAGCTGGCAAGGGAAAGAAAATGGCTCCTGAATGTGCAGCTGCTGGTATAGAAGGTTTTCCGACATGGATTATCAACGGCAAGGTTTTGGGTGGCGACCAGGAACTTCCAATCCTTGCTGAAG AATCTGGTTTCACTGTTGAGGGAA CCGAGCAATCATAAGGTCAGACACGAGAGCAAGTTTCATTCAATTGAAGGCGAGTGTTTTATGGTTTTAGTGAAGAACTCAGGTTGTGAAGGCTGACTACAACAATTCCGCATGACATACCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCTAACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAGAAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAAATGTAAAAGGGCGCATTGCTTCTCTTGAT GGTACATAATGTAATGTATAATACCTTGCAATGTGATATGTGTACAGAAAAGTGTATTGTTCAGGCAGTTAATGAGTAGGCAGTTG]
consensusID : consensus_9393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[ATTTGAAAGGCGAGTGTTTTTATGGGTTTTANTGAAGAACTCAGGGTTGTGAAGNCTGACTACAACAATTCCGCATGACATACCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCTAACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAGAAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAAATGTAAAAGGGCGCATTGCTTCTCTTCCTAGGTACATAATGTAATGTATAATACCTTGCAATGTGATATTTGTACAGAAAAGTGTATTGTTCAGTCTTTTACCCTCGGATAAAGGCAGTTAATGAGTAGCCAGTTGACGAGAATCTAAAGAAGTGTTTATTTTGAAAAAAAAA]
[+] EMBL AU032833 [ATTTGAAAGGCGAGTGTTTTTATGGGTTTTANTGAAGAACTCAGGGTTGTGAAGNCTGACTACAACAATTCCGCATGACATACCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCTAACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAGAAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAAATGTAAAAGGGCGCATTGCTTCTCTTCCTAGGTACATAATGTAATGTATAATACCTTGCAATGTGATATTTGTACAGAAAAGTGTATTGTTCAGTCTTTTACCCTCGGATAAAGGCAGTTAATGAGTAGCCAGTTGACGAGAATCTAAAGAAGTGTTTATTTTGAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9393#0 CGAGGCGACATCTCACCTCCTCGGCCGCCGGCCATGGCGACAATCTCCGCGACTCTCTCC 60
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 ATCTCCTTCCTCCCTTCATCAATTCGCTTCGCCGTCGCCACCACCTCCACCTCCACTACC 120
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TCCTCCTCCTCCTCCTGGCGTATCAAGCGACCCGCGCGGTTCAGATGCTGCGCGGAGCCC 180
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TCTTCACCGGAGCAGGAGAACCCCTCGACTCCGGCCCCGCCACCAGTGAAGCCTCCTGCG 240
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TCGCCGTCGTCCCTGTGGGGCATTTCCACGAGCACCTGGTCTGCGGGTGTCGCCGGGCTG 300
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 GGGTTTCTGGAGACCGCCTACCTCAGTTATATCAAGCTCACGGGCTCCGAGGCGTTCTGC 360
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 CCGGTTAGCGGCGGGGGCTGCGGCGACGTGCTCCAAAGCGACTACTCTGTCGTCTTCGGG 420
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 ATTCCTCTTCCACTACTTGGTCTGGTGGCATATGGTTTGGTTTTAACGCTCTCTCTTCAA 480
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 GAAAATGGGAAGAATTTCCTCCCTGGAATTGATGATCTGGATATTCGTTTAACATTACTT 540
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 CTGATCTCTACTTCAATGGCCACTGCAAGTTCTTATTTCCTATATATTCTAAACACTAGA 600
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TTTATTGGGACGTCTTGTTCATACTGCTTGTTGTCTGCATTTCTCTCCTTCACTTTATTT 660
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TCCATCAGAGTTAAGGACCTCGGTTTGGAACGTGTCCAGAAGTTTGTTGGTCTTCAATTA 720
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TCAGTAGCAATTATTGTTGCTCTTGCTCTGACAAATTCCTACAGTTCAGCTACAACACAG 780
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 TTAAACGGCACAGATGATTTTGTTTTAGAACGATATGATACAGAGATAACAACCGAATCA 840
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 ACCCCATTTGCTATTGCACTTGCAAAACATTTGCACTCTGTTGGCGCTAAGATGTATGGA 900
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 GCATTCTGGTGTTCTCATTGTAACGAACAAAAACAGATTTTTGGTCGAGAAGCTACAAAA 960
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 ATTCTGGACTATGTTGAATGTTTTCCTAATGGAGCTGGCAAGGGAAAGAAAATGGCTCCT 1020
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 GAATGTGCAGCTGCTGGTATAGAAGGTTTTCCGACATGGATTATCAACGGCAAGGTTTTG 1080
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 GGTGGCGACCAGGAACTTCCAATCCTTGCTGAAGAATCTGGTTTCACTGTTGAGGGAACC 1140
consensus_9393#1 ------------------------------------------------------------
consensus_9393#0 GAGCAATCATAAGGTCAGACACGAGAGCAAGTTTCATTCAATTGAAGGCGAGTGTTTT-A 1199
consensus_9393#1 -----------------------------------ATTTGA---AAGGCGAGTGTTTTTA 22
*** * ************** *
consensus_9393#0 TGG-TTTTAGTGAAGAACTCAGG-TTGTGAAGGCTGACTACAACAATTCCGCATGACATA 1257
consensus_9393#1 TGGGTTTTANTGAAGAACTCAGGGTTGTGAAGNCTGACTACAACAATTCCGCATGACATA 82
*** ***** ************* ******** ***************************
consensus_9393#0 CCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCT 1317
consensus_9393#1 CCGTCACACCGAGGGAAGGTTTTCGTTCCACGGTTGCATAGCCTACCTAATACAGCCCCT 142
************************************************************
consensus_9393#0 AACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAG 1377
consensus_9393#1 AACCACTGTAATAATCAGTAAAAGCTGCTCTTCTCTCATACGGAGATTGGGAGATGATAG 202
************************************************************
consensus_9393#0 AAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAA 1437
consensus_9393#1 AAGAAGCCCAAATGAGAGGTGTTGTATAATCATTTTGTAGTATGTAGATTGTGATGTAAA 262
************************************************************
consensus_9393#0 ATGTAAAAGGGCGCATTGCTTCTCTTCCTAGGTACATAATGTAATGTATAATACCTTGCA 1497
consensus_9393#1 ATGTAAAAGGGCGCATTGCTTCTCTTCCTAGGTACATAATGTAATGTATAATACCTTGCA 322
************************************************************
consensus_9393#0 ATGTGATATTTGTACAGAAAAGTGTATTGTTCAG--------------------GCAGTT 1537
consensus_9393#1 ATGTGATATTTGTACAGAAAAGTGTATTGTTCAGTCTTTTACCCTCGGATAAAGGCAGTT 382
********************************** ******
consensus_9393#0 AATGAGTAGGCAGTTG------------------------------------- 1553
consensus_9393#1 AATGAGTAGCCAGTTGACGAGAATCTAAAGAAGTGTTTATTTTGAAAAAAAAA 435
********* ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||