cluster # 9394

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9394 cluster # 9394 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9394#0 length = 697 sequences # 5

consensus_9394#1 length = 484 sequences # 1

consensusID : consensus_9394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 697
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTG-AACAAT-GCCTAAGTTTGG-AAAGTACACACAGAACAATGCCATTACTCTGGCTTG-CAAGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGCCGGTCAGGTCGGCCGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCCATGTCGCGCCGCACGATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCCGCGCCGGCGGCGCGCGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG]

[-] EMBL AU070443             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTG AACAAT GCCTAAGTTTGG AAAGTACACACAGAACAATGCCATTACTCTGGCTTG CAAGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGNATTCGGTGGAATCAATCAATCACACGGNGGTGG                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AU032876             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCANACACATGCGNCTTTCTTCCTG AACAAT GCCTAAGTTTGG AAAGTACACACAGAACAATGCCATTACNCTGGCTTG CAAGCAACACCCGCCANACGCGCGTCG GAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGANCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGNGTCGACCAGCGATGGCAGCTGT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB655399             [                         cTTTTTATTTTGGAGCAAAAGGATTTTGATCTTATTTACACCTGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTG AACAAT GCCTAAGTTTGG AAAGTACACACAGAACAATGCCATTACTCTGGCTTG CAAGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGCCGGTCAGGTCGGCCGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCCATGTCGCGCCGCACGATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCCGCGCCGGCGGCGCGCGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG]
[-] EMBL OSS15682A            [                                                                            taAGAAAAATTTAAGAAAAATCCGNCTTCCTCCTTGAAAAAATCCCCTAANTTTGGAAAATTANACACAGAACAATGCAATTANTCTGGCTTGNAAAGAAACACCCGCAAAACGCCCGTCGCGAGCCCTGTCAACTTTAAACATCCGAANACAAAGTGCACTACACATGGGAGCTCGCC GCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAANTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGC                                                                                                                                                                          ]
[-] EMBL OSS15670A            [                                                                                                                                                                                        CAAACGCGCGTCGCGACCCCTGTCAACTTTANACATCCGAGCACAAAGTGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGTTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACACGATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGC                                                                                                                                                                          ]




>consensus_9394#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATTTTGATCTTAT
TTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTGAACAATGC
CTAAGTTTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCAAGCAACACCCGC
CACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAGTGCACTACACAT
GGGAGCTCGCCGGCGCCGCCGCCGCCATGGCGACCTCGCCGGCGTCGACCAGCGATGGCA
GCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTACTAGGTATTCGGT
GGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATTCGGCCGTGTTGCC
GCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGAGGCCGTCGGACAC
GATGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTGCCGGTCAGGTCGGC
CGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCCATGTCGCGCCGCAC
GATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCCGCGCCGGCGGCGCG
CGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG

consensusID : consensus_9394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCAAGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATTCTACACATGGGAGCTCGCCGGCGCCGCCGCGCCATGGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGGTGGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCGGCGGCGGAAGGACATGAGGCCGTCGGACACGAATGCTCCCGGGGGGCAGTCCGTCGAC]

[-] EMBL BI808947             [TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATTTTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCCTGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCAAGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATTCTACACATGGGAGCTCGCCGGCGCCGCCGCGCCATGGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAATCACACGGGTGGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCGGCGGCGGAAGGACATGAGGCCGTCGGACACGAATGCTCCCGGGGGGCAGTCCGTCGAC]




>consensus_9394#1
TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATT
TTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCC
TGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCA
AGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATTCTACACATGGGAGCTCGCCG
GCGCCGCCGCGCCATGGGCGACCTCGCCGGCGTCGACCAGCGATGGCAGCTGTCGCAATC
CGCGTACCTAATTGCTCAACTGTCTAATGGTGTACTAGGTATTCGGTGGAATCAATCAAT
CACACGGGTGGGTGGTTTAGAATTCGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGC
GCTGCGGCGGCGGAAGGACATGAGGCCGTCGGACACGAATGCTCCCGGGGGGCAGTCCGT
CGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9394#0      TTTTTTTTTT----------TTTTTTTTTTTTTTTTTTTTTGGATCGGAGCAAAAGGATT 50
consensus_9394#1      TTTTTTTTTTAGAAAGGTGCTAAGCACTAGTGTAATTGGATGGATCGGAGCAAAAGGATT 60
                      **********          *      *  * *  **   ********************

consensus_9394#0      TTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCC 110
consensus_9394#1      TTGATCTTATTTACAGATGCAGAAATTCAGAAGAATTTCAGACACATGCGTCTTTCTTCC 120
                      ************************************************************

consensus_9394#0      TGAACAA-TGCCTAAGTT-TGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCA 168
consensus_9394#1      TGAACAAGTGCCTAAGTTGTGGAAAGTACACACAGAACAATGCCATTACTCTGGCTTGCA 180
                      ******* ********** *****************************************

consensus_9394#0      AGCAACACCCGCCACACGCGCGTCGCGAGCCCTGTCAACTTTACACATCCGAGCACAAAG 228
consensus_9394#1      AGCAACACCCGGCACACGCGCGTCGCGAGCCCTGTCAATT-------------------- 220
                      *********** ************************** *                    

consensus_9394#0      TGCACTACACATGGGAGCTCGCCGGCGCCGCCGCCGCCATGG-CGACCTCGCCGGCGTCG 287
consensus_9394#1      ----CTACACATGGGAGCTCGCCGGCGCCGCCGC-GCCATGGGCGACCTCGCCGGCGTCG 275
                          ****************************** ******* *****************

consensus_9394#0      ACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGCCTCAACTGTCTAATGGTGTA 347
consensus_9394#1      ACCAGCGATGGCAGCTGTCGCAATCCGCGTACCTAATTGC-TCAACTGTCTAATGGTGTA 334
                      **************************************** *******************

consensus_9394#0      CTAGGTATTCGGTGGAATCAATCAATCACACGGTGGTGGTGGTGGTGGTGGTTTAGAATT 407
consensus_9394#1      CTAGGTATTCGGTGGAATCAATCAATCACACGG--------GTG--GGTGGTTTAGAATT 384
                      *********************************        ***  **************

consensus_9394#0      CGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGCCGGCGGCGGAAGGACATGA 467
consensus_9394#1      CGGCCGTGTTGCCGCACGACGAGGACCCGAGCTCGCGCTGC-GGCGGCGGAAGGACATGA 443
                      ***************************************** ******************

consensus_9394#0      GGCCGTCGGACACGA-TGCTCCCGGCGCAGTCGTCGCCGTCGCCGCACTCGAGGCTGCTG 526
consensus_9394#1      GGCCGTCGGACACGAATGCTCCCGG-GGGGCAGT--CCGTCGAC---------------- 484
                      *************** ********* *  *  **  ****** *                

consensus_9394#0      CCGGTCAGGTCGGCCGCGTCGTCGGCCTCGTTCCGCATGGCCCGGAGCGTCTTCCTCGCC 586
consensus_9394#1      ------------------------------------------------------------
                                                                                  

consensus_9394#0      ATGTCGCGCCGCACGATGCCCGGGGCGCACTCCTCGGCGACGCGGCGGAGGGCCGCGTCC 646
consensus_9394#1      ------------------------------------------------------------
                                                                                  

consensus_9394#0      GCGCCGGCGGCGCGCGCGAGGCCGCGGAACCGGAGGCTGCCACGGCTCATG 697
consensus_9394#1      ---------------------------------------------------