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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 759 fasta sequence
[CCNGGAACACTTCGCCGGCGAC--GN-C-GG-CGGCGGCA-T-GGCCTTCTGGCA-GGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA-TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA-GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACAC-TGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC-AGTAAATAAAGAGTGTGAAAAATGCAAAAATCC-TGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTGTTTTCTA-TAA-GTGCGCAA-ACTGC-AGGCATGAGTTCAATGA-GAACCAGTAGTCACCTTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTGCATTATTAATTAAGTACTTTAACGCAAAAATTAGCAGTTTGCCAAAAACATTGTATGTGCTTGGAAAACGAGGGAGAAGAAGTTGGTAAAGTGTAGTATAGAACATACCCTAAAGAATCACATTACTTTGGGCCACAAAAAAAAAAAAAAAAAA]
[+] EMBL AU066015 [CCNGGAACACTTCGCCGGCGAC CN C GGTCGGCGTCANTNTGCCTTCTGGCANGGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACAC TGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC AGTAAATAAAGAGTGTGAAAAATGCAAAAATCC TGAACTTCAGTATTACANCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTGTTTTCTA TAAGGTGCGCAANACTGCAAGGCATGANGTCAATGAGGAACCAGTNGTCACCTTAGAATGAGCTT ]
[+] EMBL C27192 [ GAACACTTCGCCGGCGACGNGN C GG CGGCGGCA T GGCCTTCTGGCA GGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACAC TGAAGGAGGAAGNCGTAATTGTCGAAAGAGCTACAAGTAAATAAAGAGTGTGAAAAATGCAAAAATCCTTGAACTTCAGTATTACAC ]
[+] EMBL AU066018 [ GCCGGCGAC GNGCGGG CGGCGGCA T GGCCTTCTGGCA GGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACACTTGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC AGTAAATAAAGAGTGTG AAAATGCAAAAATCC TGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATNAGGGGCAAACTTTTTTCTA TAA GTNCGCAA ]
[+] EMBL AU088743 [ cAGCGCAA GCC AAGATATTCGAA GGAA GAGACGCGGTACAC GTCAC GCTGANGATATTAGAAGAGGAGCTAAAACTTGATCCATATGTGA TCTTGAAACAACAC TGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC AGTAAATAAAGAGTGTGAAAAATGCAAAAATCC TGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTGTTTTCTA TAA GTGCGCAA ACTGC AGGCATGAGTTCAATGA GAACCAGTAGTCACCTTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTGCATTATTAATTAAGTACTTTAACGCAAAAA ]
[+] EMBL AU032939 [ TACGGTCAGCAGATGAGGGGCAAACTGTTTTCTATTAA GTGCGCAA ACTGC AGGCATGAGTTCAATGA GAACCAGTAGTCNCCTTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTGCATTATTAATTAAGTACTTTAACGCATGGTTTAGCAGTTTGCCAAAAACATTGTATGTGCTTGGAAAACGAGGGAGAAGAAGTTGGTAAAGTGTAGTATAGAACATACCCTAAAGAATCACATTACTTTGGGCCACAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[GCCGGCGACGGCGGCGGCGGCATGGCTTCTGGCAGGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGCTCCGTCCGCTCCGCTCCTGCCCCTCTGCGCTTCAAGCGAAGGCAAGATATCGAGGGAAGAGCGCGTACACGTCACGCTGAGNTATTAGAGAGACTAAACTTATCCATATGTGATTCTTAAACAACACTGAAGGAGGAGCGAATTGTCGAAGGCTACAGTAAATAAAGAGTGTAAAATGCAAAATCTGACTNAGTATTCACAAGAGTTACGTCAGCAGTGAGGGCAACTGTTTCTATAAGNCGAACTCAGGATGAGTCAATGGACCAGTAGNACTAGATGANTTTTTATCATCTCGTTTGGCTAAAATGCATCTTGCATGCAAGTGTTTGAATATTTTTATGCTTCTGATATGCAGATGGGTTCGG]
[+] EMBL AU088742 [GCCGGCGACGGCGGCGGCGGCATGGCTTCTGGCAGGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGCTCCGTCCGCTCCGCTCCTGCCCCTCTGCGCTTCAAGCGAAGGCAAGATATCGAGGGAAGAGCGCGTACACGTCACGCTGAGNTATTAGAGAGACTAAACTTATCCATATGTGATTCTTAAACAACACTGAAGGAGGAGCGAATTGTCGAAGGCTACAGTAAATAAAGAGTGTAAAATGCAAAATCTGACTNAGTATTCACAAGAGTTACGTCAGCAGTGAGGGCAACTGTTTCTATAAGNCGAACTCAGGATGAGTCAATGGACCAGTAGNACTAGATGANTTTTTATCATCTCGTTTGGCTAAAATGCATCTTGCATGCAAGTGTTTGAATATTTTTATGCTTCTGATATGCAGATGGGTTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9395#0 CCNGGAACACTTCGCCGGCGACGNCGGCGGCGGCATGGCCTTCTGGCAGGCGCGGGACTT 60
consensus_9395#1 -------------GCCGGCGACGGCGGCGGCGGCATGGC-TTCTGGCAGGCGCGGGACTT 46
********** *************** ********************
consensus_9395#0 CCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTG 120
consensus_9395#1 CCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCG-CTCCGTCCGCTCCGC-TCCTG 104
************************************** *************** *****
consensus_9395#0 CCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATATCGAAGGGAAGGAGACGCGGTACAC 180
consensus_9395#1 CCCC-TCTGCG-CTTCAAGCG-AAGGC--AAGATATCGAGGGAAGAG---CGCG-TACAC 155
**** ****** ********* ***** ********** ** * * **** *****
consensus_9395#0 GGTCACGGCTGAGGATATTAGAAGAGAGCTAAAACTTGATCCATATGTGATTCTTGAAAC 240
consensus_9395#1 G-TCACG-CTGAGN-TATTA---GAGAGACTAAACTT-ATCCATATGTGATTCTT-AAAC 207
* ***** ***** ***** ***** ****** ***************** ****
consensus_9395#0 AACACTGAAGGAGGAAGACGTAATTGTCGAAAGAGCTACAGTAAATAAAGAGTGTGAAAA 300
consensus_9395#1 AACACTGAAGGAGGAGCG---AATTGTCGAAGG--CTACAGTAAATAAAGAGTGT--AAA 260
*************** ********** * ******************** ***
consensus_9395#0 ATGCAAAAATCCTGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCA 360
consensus_9395#1 ATGCAAAA--TCTGA--CTNAGTATT-CACAAG--AGTTACG-TCAGCAG-TGAGGGC-- 309
******** **** * ****** *** * ******* ******* ******
consensus_9395#0 AACTGTTTTCTATAAGTGCGCAAACTGCAGGCATGAGTTCAATGAGAACCAGTAGTCACC 420
consensus_9395#1 AACTGTTT-CTATAAG---NCGAACT-CAGG-ATGAGT-CAATGG--ACCAGTAGN-ACT 359
******** ******* * **** **** ****** ***** ******** **
consensus_9395#0 TTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGAC 480
consensus_9395#1 ---AGATGANTTTTT--ATCATCTC-----GTTTGG-CTAAAATGCA-------TCTTGC 401
**** **** **** ** * *** ****** * * *
consensus_9395#0 ATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGG 540
consensus_9395#1 ATG-CAAGTG--TTTGAA----TATTTTTATGCTTCTGAT---ATGCAGATGGGTTCGG- 450
*** ****** ****** * ********* * ** * ** ** ** *
consensus_9395#0 TGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTAT 600
consensus_9395#1 ------------------------------------------------------------
consensus_9395#0 TAGTGCATTATTAATTAAGTACTTTAACGCAAAAATTAGCAGTTTGCCAAAAACATTGTA 660
consensus_9395#1 ------------------------------------------------------------
consensus_9395#0 TGTGCTTGGAAAACGAGGGAGAAGAAGTTGGTAAAGTGTAGTATAGAACATACCCTAAAG 720
consensus_9395#1 ------------------------------------------------------------
consensus_9395#0 AATCACATTACTTTGGGCCACAAAAAAAAAAAAAAAAAA 759
consensus_9395#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||