Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9397 cluster # 9397       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9397#0 length = 1869 sequences # 4  
consensus_9397#1 length = 1379 sequences # 2  

consensusID : consensus_9397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1869
fasta sequence
                              [TTTTTCCGGCGACTCGCGAATTGCGGGTGGATTTGCTGCTTCCCTCGCTGTCGACTCGGCTCGGGCCGGTGCTTTTTTAAGTGACGTGAGAAGAAAGCGAGGCATCGAATCCAATCCAATCCAATCCAATCCAGAGTGGGGGTAAAACCAGCGATCTTTGAGGGGGCATTTTCTTTCATTTTTTTACTTTTTGGTTGGCTTGGGATTCGCCGCCGGTGTCCGATGGAGCGGTTCGTGCAGTTCTTGAGGCGGGGCAATGGGTTGATGGCGGCGTCGCTGGCGGCGGGGAGCTGCGCGGAGGAGGTGGCGAAGGCGGAGGGGGCCGGGTGCAGGGACGACGCGGCGGCGCTGAGGCTCAAGGGGGTGGCCATGGCGACGATACTGGTGGCCGGGGTGGTCGGGGTGGGTTTGCCGCTGGCGGGGCGGAAGCGGCGCGCGCTGCGCACGGACAGCGCCGCGTTCGTGGCGGCGAAGGCGTTCGCCGCGGGCGTCATCCTCGCCACGGGGTTCGTCCACATGCTGCACGACGCCGAGCACGCGCTGTCCAGCCCCTGCCTCCCCGCGCACCCGTGGCGGAGCTTCCCTTTCCCGGGGTTCGTCGCCATGTCCGCCGCGCTCGCCACGCTCGTGCTCGACTTCCTCGCCACCAGGTTCTACGAGGGCAAGCACAGGGCCGAGACGGAACGCGTCAAGGCCGCCGCCGCCGCCGCGCTCGCCGCCTCCTCGGCTAGCGACGATGACATCACCGTGGTCACCGTCACCGAGGACGACAACGACAACAAGGCGCCGCTGCTGCAACCTCACTCGCACTCACACAGCCACCCCCATGGGCATGGGCATGGCCACGAGTTGGCGCAACCGGAGGGCAGTGGCGGTGAGGGGGAGGTGCCGGCGCAAGTGCGGTCCGTCGTGGTGTCGCAGATACTTGAGATGGGGATCGTGTCGCACTCGGTGATCATCGGATTGTCGCTCGGGGTGTCACGGAGCCCCTGCACGATCAGGCCGTTGGTGGCGGCGCTCTCGTTCCACCAGTTCTTTGAGGGGTTCGCGCTTGGCGGATGCATTGCTCAGGCACAATTCAAGACACTATCAGCAGCTATAATGGCATGTTTCTTCGCCATCACAACACCAGCTGGGATCGCAGCTGGTGCCGGTGTGGCGTCATTCTACAACGCCAATAGCCCACGGGCTCTAGTGGTGGAGGGCATCCTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCTGGTTGATCTCATCGCCGCGGACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCATACA-TTGCACTGTTCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAACCAGAGGCCATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGCTTTTGGCTCATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAATCTGGCGCTGATAGAAAACCGGGGCATTGTAATGTACACATATGTATAGCTTTTGCTTGTAGCTCCTACTACTG-CCCCCAAGCTCCCAACCATATGATCACCACAGCAAGTGTTGCTAATGTGACTTATGTGAGGTGGTGATGGCTGGAGAGTGTTGTTGGCTGAGTATATATATTTTTTTGTTCTTTCCTTTTTCTAATGAAAGGTGTTTATCTTTTTTAAATGAATTGGCACCAGCAGCATCTCTGCATCTGCTGCTATTGTCCATAACAACAGTTCGATTGGTGTGATCATGTGATGTATACTCCCTCTGTTAACATAAGGGTTTAAA-TTTGTACGTAATATAGAGATTCCTATGNGATGNATATTTCCCTCTG]

[+] EMBL AK071272             [TTTTTCCGGCGACTCGCGAATTGCGGGTGGATTTGCTGCTTCCCTCGCTGTCGACTCGGCTCGGGCCGGTGCTTTTTTAAGTGACGTGAGAAGAAAGCGAGGCATCGAATCCAATCCAATCCAATCCAATCCAGAGTGGGGGTAAAACCAGCGATCTTTGAGGGGGCATTTTCTTTCATTTTTTTACTTTTTGGTTGGCTTGGGATTCGCCGCCGGTGTCCGATGGAGCGGTTCGTGCAGTTCTTGAGGCGGGGCAATGGGTTGATGGCGGCGTCGCTGGCGGCGGGGAGCTGCGCGGAGGAGGTGGCGAAGGCGGAGGGGGCCGGGTGCAGGGACGACGCGGCGGCGCTGAGGCTCAAGGGGGTGGCCATGGCGACGATACTGGTGGCCGGGGTGGTCGGGGTGGGTTTGCCGCTGGCGGGGCGGAAGCGGCGCGCGCTGCGCACGGACAGCGCCGCGTTCGTGGCGGCGAAGGCGTTCGCCGCGGGCGTCATCCTCGCCACGGGGTTCGTCCACATGCTGCACGACGCCGAGCACGCGCTGTCCAGCCCCTGCCTCCCCGCGCACCCGTGGCGGAGCTTCCCTTTCCCGGGGTTCGTCGCCATGTCCGCCGCGCTCGCCACGCTCGTGCTCGACTTCCTCGCCACCAGGTTCTACGAGGGCAAGCACAGGGCCGAGACGGAACGCGTCAAGGCCGCCGCCGCCGCCGCGCTCGCCGCCTCCTCGGCTAGCGACGATGACATCACCGTGGTCACCGTCACCGAGGACGACAACGACAACAAGGCGCCGCTGCTGCAACCTCACTCGCACTCACACAGCCACCCCCATGGGCATGGGCATGGCCACGAGTTGGCGCAACCGGAGGGCAGTGGCGGTGAGGGGGAGGTGCCGGCGCAAGTGCGGTCCGTCGTGGTGTCGCAGATACTTGAGATGGGGATCGTGTCGCACTCGGTGATCATCGGATTGTCGCTCGGGGTGTCACGGAGCCCCTGCACGATCAGGCCGTTGGTGGCGGCGCTCTCGTTCCACCAGTTCTTTGAGGGGTTCGCGCTTGGCGGATGCATTGCTCAGGCACAATTCAAGACACTATCAGCAGCTATAATGGCATGTTTCTTCGCCATCACAACACCAGCTGGGATCGCAGCTGGTGCCGGTGTGGCGTCATTCTACAACGCCAATAGCCCACGGGCTCTAGTGGTGGAGGGCATCCTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCTGGTTGATCTCATCGCCGCGGACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCATACA TTGCACTGTTCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAACCAGAGGCCATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGCTTTTGGCTCATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAATCTGGCGCTGATAGAAAACCGGGGCATTGTAATGTACACATATGTATAGCTTTTGCTTGTAGCTCCTACTACTG CCCCCAAGCTCCCAACCATATGATCACCACAGCAAGTGTTGCTAATGTGACTTATGTGAGGTGGTGATGGCTGGAGAGTGTTGTTGGCTGAGTATATATATTTTTTTGTTCTTTCCTTTTTCTAATGAAAGGTGTTTATCTTTTTTAAATGAATTGGCACCAGCAGCATCTCTGCATCTGCTGCTATTGTCCATAACAACAGTTCGATTGGTGTGATCATGTGATGTATACTCCCTCTGTTAACATAAGGGTTTAAA TTTGTACGTAATATAGAGATT                         ]
[+] EMBL AY275180             [                                                                                                                                                                                                                                 GAGCGGTTCGTGCAGTTCTTGAGGCGGGGCAATGGGTTGATGGCGGCGTCGCTGGCGGCGGGGAGCTGCGCGGAGGAGGCGGCGAAGGCGGAGGGGGCCGGGTGCAGGGACGACGCGGCGGCGCTGAGGCTCAAGGGGGTGGCCATGGCGACAATACTGGTGGCCGGGGTGGTCGGGGTGGGTTTGCCGCTGGCGGGGCGGAAGCGGCGCGCGCTGCGCACGGACAGCGCCGCGTTCGTGGCGGCGAAGGCGTTCGCCGCGGGCGTCATCCTCGCCACGGGGTTCGTCCACATGCTGCACGACGCCGAGCACGCGCTGTCCAGCCCCTGCCTCCCCGCGCACCCGTGGCGGAGCTTCCCTTTCCCGGGGTTCGTCGCCATGTCCGCCGCGCTCGCCACGCTCGTGCTCGACTTCCTCGCCACCAGGTTCTACGAGGGCAATCACAGGGCCGAGACGGAACGCGTCAAGGCCGCCGCCGCCGCCGCGCTCGCCGCCTCCTCGGCTAGCGACGATGACATCACCGTGGTCACCGTCACCGAGGACGACAACGACAACAAGGCGCCGCTGCTGCAACCTCACTCGCACTCACACAGCCACCCCCATGGGCATGGGCATGGCCACGAGTTGGCGCAACCGGAGGGCAGTGGCGGTGAGGGGGAGGTGCCGGCGCAAGTGCGGTCCGTCGTGGTGTCGCAGATACTTGAGATGGGGATCGTGTCGCACTCGGTGATCATCGGATTGTCGCTCGGGGTGTCACGGAGCCCCTGCACGATCAGGCCGTTGGTGGCGGCGCTCTCGTTCCACCAGTTCTTTGAGGGGTTCGCGCTTGGCGGATGCATTGCTCAGGCACAATTCAAGACACTATCAGCAGCTATAATGGCATGTTTCTTCGCCATCACAACACCAGCTGGGATCGCAGCTGGTGCCGGTGTGGCGTCATTCTACAACCCCAATAGCCCACGGGCTCTAGTGGTGGAGGGTATCCTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCAGGTTGATCTCATCGCCGCGGACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCATACA TTGCACTGTTCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAACCAGAGGCCATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGCTTTTGGCTCATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAAT                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA766541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCACTCGGTGATC TCGGATTGTCGCTCGGGGTGTCACGGAGCCCCTGCACGATCAGGCCGTTGGTGGCGGCGCTCTCGTTCCACCAGTTCTTTGAGGGGTTCGCGCTTGGCGGATGCATTGCTCAGGCACAATTCAAGACACTATCAGCAGCTATAATGGCATGTTTCTTCGCCATCACAACACCAGCTGGGATCGCAGCTGGTGCCGGTGTGGCGTCATTCTACAACGCCAATAGCCCACGGGCTCTAGTGGTGGAGGGCATCCTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCTGGTTGATCTCATCGCCGCGGACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCATACA TTGCACTGTTCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAACCAGAGGCCATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGCTTTTGGCTCATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAATCTGGCGCTGATAGAAAACCGGGGCATTGTAATGTACACATATGTATAGCTTTTGCTTGTAGCTCCTACTACTGCCCCCCAAGCTNCCAACCATATGATCACCACAGCAAGTGTTGCTAATGTGACTTATGTGA                                                                                                                                                                                                                                                     ]
[+] EMBL CB096609             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGTGGGCATCCTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCTGGTTGATCTCATCGCCGCGGACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCATACACTTGCACTGATCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAACCAGAGGCCATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGCTTTTGGCTCATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAATCTGGCGCTGATAGAAAACCGGGGCATTGTAATGTACACATATGTATAGCTTTTGCTTGTAGCTCCTACTACTG CCCCCAAGCTCCCAACCATATGTTCACCACAGCAAGTGTTGCTAATGTGACTTATGTGAGGTGGTGATGGCTGGAGAGTGTTGTTGGCTGAGTATATATATTTTTTTGNTCTTTCCTTTTTCTAATGAAAGGTGTTTATCTTTTTTAAATGAATTGGCACCAGCAGCATCTCTGCATCTGCTGCTATTGTCCATAACAACAGTTCGATTGGTGTGATCATGTGATGTATACTCCCTCTGGTAACATAANGGNTTAAATTTTGTACGTAATATAGAGATTCCTATGNGATGNATATTTCCCTCTG]


>consensus_9397#0 TTTTTCCGGCGACTCGCGAATTGCGGGTGGATTTGCTGCTTCCCTCGCTGTCGACTCGGC TCGGGCCGGTGCTTTTTTAAGTGACGTGAGAAGAAAGCGAGGCATCGAATCCAATCCAAT CCAATCCAATCCAGAGTGGGGGTAAAACCAGCGATCTTTGAGGGGGCATTTTCTTTCATT TTTTTACTTTTTGGTTGGCTTGGGATTCGCCGCCGGTGTCCGATGGAGCGGTTCGTGCAG TTCTTGAGGCGGGGCAATGGGTTGATGGCGGCGTCGCTGGCGGCGGGGAGCTGCGCGGAG GAGGTGGCGAAGGCGGAGGGGGCCGGGTGCAGGGACGACGCGGCGGCGCTGAGGCTCAAG GGGGTGGCCATGGCGACGATACTGGTGGCCGGGGTGGTCGGGGTGGGTTTGCCGCTGGCG GGGCGGAAGCGGCGCGCGCTGCGCACGGACAGCGCCGCGTTCGTGGCGGCGAAGGCGTTC GCCGCGGGCGTCATCCTCGCCACGGGGTTCGTCCACATGCTGCACGACGCCGAGCACGCG CTGTCCAGCCCCTGCCTCCCCGCGCACCCGTGGCGGAGCTTCCCTTTCCCGGGGTTCGTC GCCATGTCCGCCGCGCTCGCCACGCTCGTGCTCGACTTCCTCGCCACCAGGTTCTACGAG GGCAAGCACAGGGCCGAGACGGAACGCGTCAAGGCCGCCGCCGCCGCCGCGCTCGCCGCC TCCTCGGCTAGCGACGATGACATCACCGTGGTCACCGTCACCGAGGACGACAACGACAAC AAGGCGCCGCTGCTGCAACCTCACTCGCACTCACACAGCCACCCCCATGGGCATGGGCAT GGCCACGAGTTGGCGCAACCGGAGGGCAGTGGCGGTGAGGGGGAGGTGCCGGCGCAAGTG CGGTCCGTCGTGGTGTCGCAGATACTTGAGATGGGGATCGTGTCGCACTCGGTGATCATC GGATTGTCGCTCGGGGTGTCACGGAGCCCCTGCACGATCAGGCCGTTGGTGGCGGCGCTC TCGTTCCACCAGTTCTTTGAGGGGTTCGCGCTTGGCGGATGCATTGCTCAGGCACAATTC AAGACACTATCAGCAGCTATAATGGCATGTTTCTTCGCCATCACAACACCAGCTGGGATC GCAGCTGGTGCCGGTGTGGCGTCATTCTACAACGCCAATAGCCCACGGGCTCTAGTGGTG GAGGGCATCCTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCTGGTTGATCTC ATCGCCGCGGACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCA TACATTGCACTGTTCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAA CCAGAGGCCATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGC TTTTGGCTCATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAATCTGGCGC TGATAGAAAACCGGGGCATTGTAATGTACACATATGTATAGCTTTTGCTTGTAGCTCCTA CTACTGCCCCCAAGCTCCCAACCATATGATCACCACAGCAAGTGTTGCTAATGTGACTTA TGTGAGGTGGTGATGGCTGGAGAGTGTTGTTGGCTGAGTATATATATTTTTTTGTTCTTT CCTTTTTCTAATGAAAGGTGTTTATCTTTTTTAAATGAATTGGCACCAGCAGCATCTCTG CATCTGCTGCTATTGTCCATAACAACAGTTCGATTGGTGTGATCATGTGATGTATACTCC CTCTGTTAACATAAGGGTTTAAATTTGTACGTAATATAGAGATTCCTATGNGATGNATAT TTCCCTCTG



consensusID : consensus_9397#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1379
fasta sequence
                              [GGCGGCGGCGGTGACAAGGACGAGGAGTGCCGCGACGAGGCGGCGGCTCTGCGGCTCAAGATGGTGGCCGTCGCGGCCATCCTCATCGCCGGCGCGGCCGGGGTCGCCATCCCGCTCGTCGGCCGGAGGCGGCGTGGCGGTGGCGGTGGCGGTGGCGGGGGCGCGTCCTCCGGCGGGCTCTTCGTGCTCGCCAAGGCGTTCGCGGCGGGGGTGATCCTGGCCACGGGGTTCGTCCACATGCTGCACGACGCGGAGCACGCGCTCTCCAACCCCTGCCTCCCGCACTCCCCCTGGCGGCGCTTCCCCTTCCCGGGGTTCGTCGCCATGCTCGCCGCGCTCGCCACCCTCGTCGTCGACTTCGTCGGCACCCACTTCTACGAGCGGAAGCACCGCCAGGAGGAGGCCGCCGCGGCCGCCGAAGAGGCGGCCGCCGCGCTGCTCGAGGACGGCGGCGCGCTGCCGGTCGGGGACGGCGAAGGACGGGATGGACGAGGCGGGAAGCGGGACGCCATGCACATCGTCGGGATACACGCCCACGCGGCCGCTCACCGGCACAGCCATGCGCACGTCCACGGCGCGTGCCATGGGGGAGCTGTGAATGACGCCCACGCGCACGGCCATGGCCACGGGCACGAGGAGGGCCCCTCCGCTCGCCATGTGGTTGTCTCGCAGATTCTGGAGCTGGGAATTGTATCTCACTCGGTCATCATTGGCCTATCGTTGGGCGTCTCTCAGAGCCCGTGTACAATCAAACCTCTGGTTGCTGCCCTCTCATTCCACCAGTTCTTCGAGGGTTTTGCGGTGGGCGGCTGCATTTCTGAGGCTCAGTTAAAGAACTTCTCTGCTTTCCTGATGGCTTTCTTCTTTGCTATCACAACACCTGCTGGGATCACTGTGGGGGCGGCGGTTGCATCATTTTACAACCCCAACAGCCCCAGAGCGTTGGTGGTGGAGGGAATTCTGGACTCGATGTCGGCTGGTATACTGATCTATATGGCATTAGTGGATCTTATTGCTGCTGATTTTCTTAGCCGGAAGATGAGCTGCAACCCAAGGCTTCAAGTGGGCTCGTATATAGCTCTGTTTCTTGGGGCCATGGCCATGGCAGCCCTGGCATTATGGGCTTAGTCTGTAGACTTTAAGTAAGACGAAGCTTGGGAGAAACTGCTTGGTGTTCAATGTGCTAGGAGTTACTCCCTAGCTTCTTATGATTCTGTAGGAAGATGGGCTCTTCTTTTTCTTTTCGGTCATTGTTCTGTTTGTTTGTTCTTTCTATGGCAATGGGTTATACAAGTCCCTCCTTTTGTTCGTACAAAACAAAGTCCCTCATCGGGATTTTTCAGACGGATATATACTGCAAGGAATAAAGAGTTCTTGAG]

[+] EMBL CB644313             [GGCGGCGGCGGTGACAAGGACGAGGAGTGCCGCGACGAGGCGGCGGCTCTGCGGCTCAAGATGGTGGCCGTCGCGGCCATCCTCATCGCCGGCGCGGCCGGGGTCGCCATCCCGCTCGTCGGCCGGAGGCGGCGTGGCGGTGGCGGTGGCGGTGGCGGGGGCGCGTCCTCCGGCGGGCTCTTCGTGCTCGCCAAGGCGTTCGCGGCGGGGGTGATCCTGGCCACGGGGTTCGTCCACATGCTGCACGACGCGGAGCACGCGCTCTCCAACCCCTGCCTCCCGCACTCCCCCTGGCGGCGCTTCCCCTTCCCGGGGTTCGTCGCCATGCTCGCCGCGCTCGCCACCCTCGTCGTCGACTTCGTCGGCACCCACTTCTACGAGCGGAAGCACCGCCAGGAGGAGGCCGCCGCGGCCGCCGAAGAGGCGGCCGCCGCGCTGCTCGAGGACGGCGGCGCGCTGCCGGTCGGGGACGGCGAAGGACGGGATGGACGAGGCGGGAAGCGGGACGCCATGCACATCGTCGGGATACACGCCCACGCGGCCGCTCACCGGCACAGCCATGCGCACGTCCACGGCGCGTGCCATGGGGGAGCTGTGAATGACGCCCACGCGCACGGCCATGGCCACGGGCACGAGGAGGGCCCCTCCGCTCGCCATGTGGTTGTCTCGCAGATTCTGGAGCTGGGAATTGTATCTCACTCGGTCATCATTGGCCTATCGTTGGGCGTCTCTCAGAGCCCGTGTACAATCAAACCTCTGGTTGCTGCCCTCTCATTCCACCAGTTCTTCGAGGGTTTTGCGGTGGGCGGCTGCATTTCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB644314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTGTGAATGACGCCCACGCGCACGGCCATGGCCACGGGCACGAGGAGGGCCCCTCCGCTCGCCATGTGGTTGTCTCGCAGATTCTGGAGCTGGGAATTGTATCTCACTCGGTCATCATTGGCCTATCGTTGGGCGTCTCTCAGAGCCCGTGTACAATCAAACCTCTGGTTGCTGCCCTCTCATTCCACCAGTTCTTCGAGGGTTTTGCGTTGGGCGGCTGCATTTCTGAGGCTCAGTTAAAGAACTTCTCTGCTTTCCTGATGGCTTTCTTCTTTGCTATCACAACACCTGCTGGGATCACTGTGGGGGCGGCGGTTGCATCATTTTACAACCCCAACAGCCCCAGAGCGTTGGTGGTGGAGGGAATTCTGGACTCGATGTCGGCTGGTATACTGATCTATATGGCATTAGTGGATCTTATTGCTGCTGATTTTCTTAGCCGGAAGATGAGCTGCAACCCAAGGCTTCAAGTGGGCTCGTATATAGCTCTGTTTCTTGGGGCCATGGCCATGGCAGCCCTGGCATTATGGGCTTAGTCTGTAGACTTTAAGTAAGACGAAGCTTGGGAGAAACTGCTTGGTGTTCAATGTGCTAGGAGTTACTCCCTAGCTTCTTATGATTCTGTAGGAAGATGGGCTCTTCTTTTTCTTTTCGGTCATTGTTCTGTTTGTTTGTTCTTTCTATGGCAATGGGTTATACAAGTCCCTCCTTTTGTTCGTACAAAACAAAGTCCCTCATCGGGATTTTTCAGACGGATATATACTGCAAGGAATAAAGAGTTCTTGAG]


>consensus_9397#1 GGCGGCGGCGGTGACAAGGACGAGGAGTGCCGCGACGAGGCGGCGGCTCTGCGGCTCAAG ATGGTGGCCGTCGCGGCCATCCTCATCGCCGGCGCGGCCGGGGTCGCCATCCCGCTCGTC GGCCGGAGGCGGCGTGGCGGTGGCGGTGGCGGTGGCGGGGGCGCGTCCTCCGGCGGGCTC TTCGTGCTCGCCAAGGCGTTCGCGGCGGGGGTGATCCTGGCCACGGGGTTCGTCCACATG CTGCACGACGCGGAGCACGCGCTCTCCAACCCCTGCCTCCCGCACTCCCCCTGGCGGCGC TTCCCCTTCCCGGGGTTCGTCGCCATGCTCGCCGCGCTCGCCACCCTCGTCGTCGACTTC GTCGGCACCCACTTCTACGAGCGGAAGCACCGCCAGGAGGAGGCCGCCGCGGCCGCCGAA GAGGCGGCCGCCGCGCTGCTCGAGGACGGCGGCGCGCTGCCGGTCGGGGACGGCGAAGGA CGGGATGGACGAGGCGGGAAGCGGGACGCCATGCACATCGTCGGGATACACGCCCACGCG GCCGCTCACCGGCACAGCCATGCGCACGTCCACGGCGCGTGCCATGGGGGAGCTGTGAAT GACGCCCACGCGCACGGCCATGGCCACGGGCACGAGGAGGGCCCCTCCGCTCGCCATGTG GTTGTCTCGCAGATTCTGGAGCTGGGAATTGTATCTCACTCGGTCATCATTGGCCTATCG TTGGGCGTCTCTCAGAGCCCGTGTACAATCAAACCTCTGGTTGCTGCCCTCTCATTCCAC CAGTTCTTCGAGGGTTTTGCGGTGGGCGGCTGCATTTCTGAGGCTCAGTTAAAGAACTTC TCTGCTTTCCTGATGGCTTTCTTCTTTGCTATCACAACACCTGCTGGGATCACTGTGGGG GCGGCGGTTGCATCATTTTACAACCCCAACAGCCCCAGAGCGTTGGTGGTGGAGGGAATT CTGGACTCGATGTCGGCTGGTATACTGATCTATATGGCATTAGTGGATCTTATTGCTGCT GATTTTCTTAGCCGGAAGATGAGCTGCAACCCAAGGCTTCAAGTGGGCTCGTATATAGCT CTGTTTCTTGGGGCCATGGCCATGGCAGCCCTGGCATTATGGGCTTAGTCTGTAGACTTT AAGTAAGACGAAGCTTGGGAGAAACTGCTTGGTGTTCAATGTGCTAGGAGTTACTCCCTA GCTTCTTATGATTCTGTAGGAAGATGGGCTCTTCTTTTTCTTTTCGGTCATTGTTCTGTT TGTTTGTTCTTTCTATGGCAATGGGTTATACAAGTCCCTCCTTTTGTTCGTACAAAACAA AGTCCCTCATCGGGATTTTTCAGACGGATATATACTGCAAGGAATAAAGAGTTCTTGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9397#0      TTTTTCCGGCGACTCGCGAATTGCGGGTGGATTTGCTGCTTCCCTCGCTGTCGACTCGGC 60
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      TCGGGCCGGTGCTTTTTTAAGTGACGTGAGAAGAAAGCGAGGCATCGAATCCAATCCAAT 120
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      CCAATCCAATCCAGAGTGGGGGTAAAACCAGCGATCTTTGAGGGGGCATTTTCTTTCATT 180
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      TTTTTACTTTTTGGTTGGCTTGGGATTCGCCGCCGGTGTCCGATGGAGCGGTTCGTGCAG 240
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      TTCTTGAGGCGGGGCAATGGGTTGATGGCGGCGTCGCTGGCGGCGGGGAGCTGCGCGGAG 300
consensus_9397#1      -----------------------------------------------------------G 1
                                                                                 *

consensus_9397#0      GAGGTGGCGAAGGCGGAGGGGGCCGGGTGCAGGGACGACGCGGCGGCGCTGAGGCTCAAG 360
consensus_9397#1      GCGGCGGCGGTGACA-AGGACGAGGAGTGCCGCGACGAGGCGGCGGCTCTGCGGCTCAAG 60
                      * ** ****  * *  ***  *  * **** * ***** ******** *** ********

consensus_9397#0      GGGGTGGCCATGGCGACGATACTGGTGGCCGGGGTGGTCGGGGTGGGTTTGCCGCTGGCG 420
consensus_9397#1      ATGGTGGCCGTCGCGGCCATCCTCATCGCCGGCGCGGCCGGGGTCGCCATCCCGCTCGTC 120
                        ******* * *** * ** **  * ***** * ** ****** *   * ***** *  

consensus_9397#0      GGGCGGAAGCGGCGCG-CGCTGC-----GCACGGACAGCGCCGCGT-------------- 460
consensus_9397#1      GGCCGGAGGCGGCGTGGCGGTGGCGGTGGCGGTGGCGGGGGCGCGTCCTCCGGCGGGCTC 180
                      ** **** ****** * ** **      **   * * * * *****              

consensus_9397#0      -TCGTGGCGGCGAAGGCGTTCGCCGCGGGCGTCATCCTCGCCACGGGGTTCGTCCACATG 519
consensus_9397#1      TTCGTGCTCGCCAAGGCGTTCGCGGCGGGGGTGATCCTGGCCACGGGGTTCGTCCACATG 240
                       *****   ** *********** ***** ** ***** *********************

consensus_9397#0      CTGCACGACGCCGAGCACGCGCTGTCCAGCCCCTGCCTCCCCGCGCACCCGTGGCGGAGC 579
consensus_9397#1      CTGCACGACGCGGAGCACGCGCTCTCCAACCCCTGCCTCCCGCACTCCCCCTGGCGGCGC 300
                      *********** *********** **** ************      *** ****** **

consensus_9397#0      TTCCCTTTCCCGGGGTTCGTCGCCATGTCCGCCGCGCTCGCCACGCTCGTGCTCGACTTC 639
consensus_9397#1      TTCCCCTTCCCGGGGTTCGTCGCCATGCTCGCCGCGCTCGCCACCCTCGTCGTCGACTTC 360
                      ***** *********************  *************** *****  ********

consensus_9397#0      CTCGCCACCAGGTTCTACGAGGGCAAGCAC----AGGGCCGAGACGGAACG--CGTCAAG 693
consensus_9397#1      GTCGGCACCCACTTCTACGAGCGGAAGCACCGCCAGGAGGAGGCCGCCGCGGCCGCCGAA 420
                       *** ****   ********* * ******    ***     * **   **  ** * * 

consensus_9397#0      GCCGCCGCCGCCGCCGCGCTCGC---------CGCCTCCTCGGCTAGCGACGATGACAT- 743
consensus_9397#1      GAGGCGGCCGCCGCGCTGCTCGAGGACGGCGGCGCGCTGCCGGTCGGGGACGGCGAAGGA 480
                      *  ** ********   *****          ***     ***   * ****  **    

consensus_9397#0      CACCGTGGTCAC--CGTCACCGAGGACGACA---ACGACAACAAGGCGC-CGCTGCTGCA 797
consensus_9397#1      CGGGATGGACGAGGCGGGAAGCGGGACGCCATGCACATCGTCGGGATACACGCCCACGCG 540
                      *    *** *    **  *    ***** **   **  *  *  *   * ***    ** 

consensus_9397#0      ACC--TCACTCGCACTCACACAGCCACCCCCATGG-GCATG----GGCATGGCCACGAGT 850
consensus_9397#1      GCCGCTCACCGGCACAGCCATGCGCACGTCCACGGCGCGTGCCATGGGGGAGCTGTGAAT 600
                       **  ****  ****   **    ***  *** ** ** **    **    **   ** *

consensus_9397#0      TG-GCGCAACCGGAGGGCAGTGGCGGTGAGGGGGAGGTGCCGGCGCAAGTGCGGTCCGTC 909
consensus_9397#1      GACGCCCACGCGCACGGCCATGGCCACGGGCACGAGGAGGGCCCCTCCGCTCGCCATGTG 660
                         ** **  ** * ***  ****   * *   **** *    *    *  **    ** 

consensus_9397#0      GTGGTGTCGCAGATACTTGAGATGGGGATCGTGTCGCACTCGGTGATCATCGGATTGTCG 969
consensus_9397#1      GTTGTCTCGCAGATTCTGGAGCTGGGAATTGTATCTCACTCGGTCATCATTGGCCTATCG 720
                      ** ** ******** ** *** **** ** ** ** ******** ***** **  * ***

consensus_9397#0      CTCGGGGTGTCACGGAGCCCCTGCACGATCAGGCCGTTGGTGGCGGCGCTCTCGTTCCAC 1029
consensus_9397#1      TTGGGCGTCTCTCAGAGCCCGTGTACAATCAAACCTCTGGTTGCTGCCCTCTCATTCCAC 780
                       * ** ** ** * ****** ** ** ****  **  **** ** ** ***** ******

consensus_9397#0      CAGTTCTTTGAGGGGTTCGCGCTTGGCGGATGCATTGCTCAGGCACAATTCAAGACACTA 1089
consensus_9397#1      CAGTTCTTCGAGGGTTTTGCGGTGGGCGGCTGCATTTCTGAGGCTCAGTTAAAGAACTTC 840
                      ******** ***** ** *** * ***** ****** ** **** ** ** ****   * 

consensus_9397#0      TCAGCAGCTATAATGGCATGTTTCTTCGCCATCACAACACCAGCTGGGATCGCAGCTGGT 1149
consensus_9397#1      TCTGCTTTCCTGATGGCTTTCTTCTTTGCTATCACAACACCTGCTGGGATCACTGTGGGG 900
                      ** **     * ***** *  ***** ** *********** ********* * *  ** 

consensus_9397#0      GCCGGTGTGGCGTCATTCTACAACGCCAATAGCCCACGGGCTCTAGTGGTGGAGGGCATC 1209
consensus_9397#1      GCGGCGGTTGCATCATTTTACAACCCCAACAGCCCCAGAGCGTTGGTGGTGGAGGGAATT 960
                      ** *  ** ** ***** ****** **** *****  * **  * *********** ** 

consensus_9397#0      CTCGACTCCGTGTCGGCCGGCATCCTAATATACATGTCGCTGGTTGATCTCATCGCCGCG 1269
consensus_9397#1      CTGGACTCGATGTCGGCTGGTATACTGATCTATATGGCATTAGTGGATCTTATTGCTGCT 1020
                      ** *****  ******* ** ** ** ** ** *** *  * ** ***** ** ** ** 

consensus_9397#0      GACTTCCTTGGCGGGAAAATGACAGGATCGACACGGCAGCAGGTGATGGCATACATTGCA 1329
consensus_9397#1      GATTTTCTTAGCCGGAAGATGAGCTGCAACCCAAGGCTTCAAGTGGGCTCGTATATAGCT 1080
                      ** ** *** ** **** ****   *     ** ***  ** ***    * ** ** ** 

consensus_9397#0      CTGTTCCTCGGCGCTCTCTCCATGTCATCCCTTGCAATCTGGGCCTGAAAACCAGAGGCC 1389
consensus_9397#1      CTGTTTCTTGGGGCCATGGCCATGGCAGCCCTGGCATTATGGGCTT--AGTCTGTAGACT 1138
                      ***** ** ** **  *  ***** ** **** *** * ***** *  *  *   ** * 

consensus_9397#0      ATGGGTTTGAAGATAGTTGCACAACAACGCATACAGAGTAGTAGTAGCAGCTTTTGGCTC 1449
consensus_9397#1      TTAAGTAAGACGAAGCTTGGGAGAAACTGCTTGGTGTTCAAT-GTGCTAGGAGTTACTCC 1197
                       *  **  ** **   ***    * *  ** *   *   * * **   **   **    *

consensus_9397#0      ATATCACAACAACATGCCCTGTTTTTCATGGGCGTGAGACTAATCTGGCGCTGATAGAAA 1509
consensus_9397#1      CT--------AGCTTCTTATGATTCTGTAGGAAGATGGGCTCTTCTTTTTCTTTTCG--- 1246
                       *        * * *    ** ** *   **  *   * **  ***    **  * *   

consensus_9397#0      ACCGGGGCATTGTAATGTACACATATGTATAGCTTTTGCTTGTAGCTCCTACTACTGCCC 1569
consensus_9397#1      -----GTCATTGT--TCTGTTTGTTTGTTCTTTCTATGGCAATGGGTTATACAAGTCCCT 1299
                           * ******  * *     * ***      * **    * * *  *** * * ** 

consensus_9397#0      CCAAGCTCCCA-ACCATATGATCACCACAGCAAGTGTTGCTAATGTGACTTATGTGAGGT 1628
consensus_9397#1      CCTTTTGTTCGTACAAAACAAAGTCCCTCATCGGGATTTTTCA---GACGGATAT-ATAC 1355
                      **       *  ** * *  *   **       *  **  * *   ***  ** * *   

consensus_9397#0      GGTGATGGCTGGAGAGTGTTGTTGGCTGAGTATATATATTTTTTTGTTCTTTCCTTTTTC 1688
consensus_9397#1      TGCAAGGAATAAAGAGTTCTTGAG------------------------------------ 1379
                       *  * *  *  *****  *   *                                    

consensus_9397#0      TAATGAAAGGTGTTTATCTTTTTTAAATGAATTGGCACCAGCAGCATCTCTGCATCTGCT 1748
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      GCTATTGTCCATAACAACAGTTCGATTGGTGTGATCATGTGATGTATACTCCCTCTGTTA 1808
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      ACATAAGGGTTTAAATTTGTACGTAATATAGAGATTCCTATGNGATGNATATTTCCCTCT 1868
consensus_9397#1      ------------------------------------------------------------
                                                                                  

consensus_9397#0      G 1869
consensus_9397#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)