These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 664 fasta sequence [TTCACTATTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCTGTCGGCGAAGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAAGACCTTCTTCAT] [-] EMBL AK060541 [ CACTATCCCTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGC ] [-] EMBL C98199 [tttttttTTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTACTGCAGANATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGNACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGNAACGCCGAATCGAATATTACCTCTGn ] [-] EMBL AU108624 [ TTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGANGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCTGTCGGCGAAGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAAGACCTTCTTCAT] [-] EMBL AU032959 [ TTTTT TTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGATATGTACAGGGCAATGGGCTTTTTCAGTAGTTCAGTTGCGACACTGATAAGTTAATACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTACAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCTGCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCCATGAGTTTAAGTTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAAT ] consensusID : consensus_9398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [AAAGCGTTTCCCCCCCTCCCCGCCGGCGGCGCCGCTTGCCGCGGGGGACGATGTACAAGCTCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGGGGCGGAGCCGCGAAGCGCCCGCCAGCCCCCCACGGCCGCGGCCGTGGGGCTGGCCCCTCTATCGGCGGCATGCCCGCGCCCCCCCGCGGTCGCGGCGCCGCTGCCGCCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGTCCGTGAGGTTAAGGTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTTACTCATTTGAATAGCTGTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGTGAAGCACTGAAAAGACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT] [+] EMBL CB679227 [AAAGCGTTTCCCCCCCTCCCCGCCGGCGGCGCCGCTTGCCGCGGGGGACGATGTACAAGCTCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGGGGCGGAGCCGCGAAGCGCCCGCCAGCCCCCCACGGCCGCGGCCGTGGGGCTGGCCCCTCTATCGGCGGCATGCCCGCGCCCCCCCGCGGTCGCGGCGCCGCTGCCGCCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGTCCGTGAGGTTAAGGTTTCGCCAGCTCAGGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGATCGTGTTCCACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGCAAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAAGCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTTACTCATTTGAATAGCTGTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGTGAAGCACTGAAAAGACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT] consensusID : consensus_9398#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTTTCGCNAGCTCAAGGCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCCACCATCATGATTGNAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGCAAGCTTAATGCAAAGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAANCAGTT] [-] EMBL OS1051A [ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTTTCGCNAGCTCAAGGCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCCACCATCATGATTGNAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCTTTCCACTAGTAAATGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGCAAGCTTAATGCAAAGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAANCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9398#0 TTCACTATTTTTTGATTTATCTCACTTCAAAACTTCTCTATTTGATTCTGGTTCTGCAGA 60 consensus_9398#2 ------------------------------------------------------------ consensus_9398#1 ------------------AAAGCGTTTC----CCCCCCTCCCCGCCGGCGGCGCCGCTTG 38 consensus_9398#0 TATGTACAGGGCAATGGGCTTTTTCAGTAGTT----CAGTTGCGACACTGATAAGTTAAT 116 consensus_9398#2 ------------------------------------------------------------ consensus_9398#1 C-CGCGGGGGACGATGTACAAGCTCGGCGGCCGTGGCGGCTGCCGCGGCGGCGGG--GGC 95 consensus_9398#0 ACAAAGGTAATGTACACAACGAAACATCGAGATGAGGGGAGAGACACCTCGCCCTTTTTA 176 consensus_9398#2 ------------------------------------------------------------ consensus_9398#1 GGAGCCGCGAAGCGCCCGCCAGCCCCCCACGGCCGCGGCCGTGG-GGCTGGCCCCTCTAT 154 consensus_9398#0 CAACGGGAGAAGCAAAAGCATCTACAAAGGGAACCACCTGGTCACATTGCCAATCTACCT 236 consensus_9398#2 ------------------------------------------------------------ consensus_9398#1 CGGCGGCATGCCC----GCGCCC----------CCCCGCGGTCGCGGCGCCG--CTGCCG 198 consensus_9398#0 GCAAAATTGTGTTGTAACGCCGAATCGAATATTACCTCTGTTCC-ATGAGTTTAA-GTTT 294 consensus_9398#2 -------------ACCCGCCCGAATCGAATATTACCTCTGTTCCCATGAGTTCAAAGTTT 47 consensus_9398#1 CCGCCGCGGCGGTGGAAGGGCCAGTCCAATGTTACCTGTGGTCC-GTGAGGTTAA-GGTT 256 * * ** *** ****** ** *** **** * ** * ** consensus_9398#0 TCGCCAGCTCA-GGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGA-TCGTGTTCC 352 consensus_9398#2 TCGCNAGCTCAAGGCTGTCAGGTGGTNAGGGTATGTTCNTAATANCTTGAGCCGTGTNCC 107 consensus_9398#1 TCGCCAGCTCA-GGCTGTCAGGTGGTGAGGGTATGTTCTTAATATCTTGA-TCGTGTTCC 314 **** ****** ************** *********** ***** ***** ***** ** consensus_9398#0 ACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCT 412 consensus_9398#2 ACCATCATGATTGNAACTCAGCANAGGGGTCTACCGAACTAGCAATTNCCTNAGCTTTCT 167 consensus_9398#1 ACCATCATGATTGAAATTCAGCACAGGGGTCTACCGAACTATCAATTTCCTCAGCTTTCT 374 ************* ** ****** ***************** ***** *** ******** consensus_9398#0 TTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGC 472 consensus_9398#2 TTCCACTAGTAAATGCCTTTGAATGAATATCCCAAGCTATGNACGTGCTTCTANAAAGGC 227 consensus_9398#1 TTCCACTAGTAAATGCCTTTGAATGAATATCTCAAGCTATGCACGTGCTTCTACAAAGGC 434 ******************************* ********* *********** ****** consensus_9398#0 AAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAA 532 consensus_9398#2 AAGCTTAATGCAAAGGTCTCAGTTTCTTCAGAGNCGATGCTGTATGACAGCCTCTGGAAA 287 consensus_9398#1 AAGCTTAATGCCAAGGTCTCAGTTTCTTCAGAGTCGATGCTGTATGACAGCCTCTGGAAA 494 *********** ********************* ************************** consensus_9398#0 GCAGTTGCAAATGCCATGTNATGACGGTATAAGTACAACAGTTTACTCATTTGAATAGCT 592 consensus_9398#2 NCAGTT------------------------------------------------------ 293 consensus_9398#1 GCAGTTGCAAATGCCATGTTATGACGGGATAAGTACAACAGTT-ACTCATTTGAATAGCT 553 ***** consensus_9398#0 GTCGGCGAAGTCTTTAATNCTTCTCTTGATAGTCTGCAACTCTTCGNGAAGCAGTGAAAA 652 consensus_9398#2 ------------------------------------------------------------ consensus_9398#1 GTCCGCGAAGACTTTAATTCTTCTCTTGATAGGCTGCAACTCTTCGTGAAGCACTGAAAA 613 consensus_9398#0 GACCTTCTTCAT--------------------------------- 664 consensus_9398#2 --------------------------------------------- consensus_9398#1 GACCTTCTTCATCAATTTATGCCTTGTGCCCGATTCCTGAAACAT 658 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||