These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 897 fasta sequence [AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTCGCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATGTGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGGAGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCA-GCCCGCC-GGCCTCGGGCGGCGCCGTCAGGCTTG-GCGGCGCGAGGCGGATGGGCGGCAGCG-C-GCTG-GTGCGG-ATCGGCGCCGTG-GAG-AGCGGCCA-GTGGGCGCGGAGGGCTCTCGCCG-CCACCATCCGCCCCTCCCCCGCCGCGCA-GCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGCCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAAT-TTTTTTTTTCTGTAGTGTATAGTGATGTGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCC-ATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAG-TACGTGTCTCCGGATTACGCACAAAAAAAAAA] [+] EMBL AK065260 [AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTCGCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGCCGCTCCTGCATGTGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGGAGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCA GCCCGCC GGCCTCGGGCGGCGCCGTCAGGCTTG GCGGCGCGAGGCGGATGGGCGGCAGCG C GCTG GTGCGG ATCGGCGCCGTG GAG AGCGGCCA GTGGGCGCGGAGGGCTCTCGCCG CCACCATCCGCCCCTCCCCCGCCGCGCA GCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGCCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAAT TTTTTTTTTCTGTAGTGTATAGTGATGTGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATT CATTCTGAAATCTGCCC ATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAG TACGTGTCTCCG ] [+] EMBL AU057280 [ AGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACNGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCA CGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACNACCGCTCCGCCTCCCCGACGCGCGTCAAGCTCGCCGGCGG GGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCNCCTGCATGTGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGGANNATCCACCACAAGGNGGCGGCG ] [+] EMBL AU069609 [ AGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCCCAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCGAGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGNCTNCCCGACGCGCGTCAAGCTCGCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATGTGCTCGNCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTTCACAAGGAGCAGAAGCGGAGCGTTCAC ] [+] EMBL BQ908896 [ CGACCATGCCCGCCTGGCCTCGGTCGGCGCCGTCAGGCTTGTGCGGCGCGA GCGGAT GGCGTCAGCGTCTNCTGTGT CGGTATCGGCGCCGTGTGAGTAGCGGCCATGTGGGC CGGAGGGCTCTCGCCGTCCACCATCCGCCCCTCCCCCGCCGCGCATTCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCCCCCGCCCCAGCCGCCTNTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTGTATAGTGATGTGAGAAGTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCC ATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAG TACGTGTCTCCGGATTACGCACAAAAAAAAAA] [+] EMBL BI811228 [ GTGAGATTAAGCTGAACATGGAGTTTTGGATCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCCTTTGGTTTTGGATTAAATCC TTAATCCTTAT CCTTTCATGATAAGAAGAGAAGAAAAAATTGGAGATAGTTACCTG ] consensusID : consensus_9413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [ATCGGCCCGTGGAGAGCGCCAGTGGCCGAGGCTTTCCCGCCACCATCCGCCCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCGCGCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCCATGTGAGAAGTGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCAAAAAAAAAA] [+] EMBL BI812910 [ATCGGCCCGTGGAGAGCGCCAGTGGCCGAGGCTTTCCCGCCACCATCCGCCCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCGCGCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACCACCACCGATAAACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCATAGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCCATGTGAGAAGTGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTACATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9413#0 AAAACCACCAACCCGGAAGCACAAAAACCGCCCTCTCCTCCTCTCGTCGCCACTGCTCCC 60 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 CAATCCACCCGACTCCGGCGATCTCCCATGGCGGCAGCGGCGACGGCCACGAGGCGGCCG 120 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 AGCGGGCACGTCCTCTCCGCCGCGCACTACCGCTCCGCCTCCCCGACGCGCGTCAAGCTC 180 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 GCCGGCGGCGGAGCACGCGCGTCCGTCAGCGTCTCGTCCGTGAGCCGNCGCTCCTGCATG 240 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 TGCTCGCCGACCAACCACCCGGGGTCGTTCCGGTGCAGCCTCCACAAGGAGCAGAAGCGG 300 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 AGCGTTCACCACAAGGCGGCGGCGGCGCCATCCTCCCCGCCGTCGCCGACCAGCCCGCCG 360 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 GCCTCGGGCGGCGCCGTCAGGCTTGGCGGCGCGAGGCGGATGGGCGGCAGCGCGCTGGTG 420 consensus_9413#1 ------------------------------------------------------------ consensus_9413#0 CGGATCGGCGCCGTGGAGAGCGGCCAGTGGGCGCGGAGGGCTCTCGCCGCCACCATCCGC 480 consensus_9413#1 ---ATCGGC-CCGTGGAGAGCG-CCAGTGGCCG----AGGCTTTC-CCGCCACCATCCGC 50 ****** ************ ******* ** **** ** ************** consensus_9413#0 CCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGC-CCCCG 539 consensus_9413#1 CCCTCCCCCGCCGCGCAGCAGGCGCAGCACCGGAGACGCGTCGCCGGGCTCCGCGCCCCG 110 ****************************************************** ***** consensus_9413#0 C-CCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACC 598 consensus_9413#1 CGCCCAGCCGCCTCTCCGCCGTCTCCATGGCCGGCGACCGCGCCGGCGACAACCACCACC 170 * ********************************************************** consensus_9413#0 ACCACCGATAAACCCCAATTCGCCGACATCTCAACCAATTGAGACACATACTAGTAGCAT 658 consensus_9413#1 ACCACCGATAAACCCCCATTCGCCGACATCTCAACCCATTGAGACACATACTAGTAGCAT 230 **************** ******************* *********************** consensus_9413#0 AGTAGTAGTACATAGGAATTATTACATATAGAAAT-TTTTTTTTTCTGTAGTGTATAGTG 717 consensus_9413#1 AGTAGTAGTACATAGGAATTATTACATATAGAAATATTTTTTTTTCTGTAGTCCCCCTCC 290 *********************************** **************** consensus_9413#0 ATGTGAGAAGTGAGATTAAGCTGAACA---TGGAGTTTTGGATCC-GTGTGCTGCTTGTA 773 consensus_9413#1 ATGTGAGAAGTGAGATTAAGCTGAACACACTGGAGTTTTGGATCCCGTGTGCTGCTTGTA 350 *************************** *************** ************** consensus_9413#0 CATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTC 833 consensus_9413#1 CATTCCATTCTGAAATCTGCCCATGGTTTTGGATTAAATCCATTAATCCTTATGCCTTTC 410 ************************************************************ consensus_9413#0 ATGATAAGAAGAGAAGAAAAAATTGGAGATAGTACGTGTCTCCGGATTACGCACAAAAAA 893 consensus_9413#1 AAAAAAAAAA-------------------------------------------------- 420 * * ** ** consensus_9413#0 AAAA 897 consensus_9413#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||