These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTTNTGTGTGCTAATGGNGGAATTTCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATTTGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTGGTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATATTGTTGATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATATTNTATGTTCAACTTGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096337 [GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTTNTGTGTGCTAATGGNGGAATTTCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATTTGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTGGTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATATTGTTGATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATATTNTATGTTCAACTTGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGAGAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATCAAAAGGTGGGGTTTGTGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATTTGGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTGGTTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172760 [GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGAGAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATCAAAAGGTGGGGTTTGTGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATTTGGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTGGTTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_942#0 ------------------------------------------------------------ consensus_942#1 GCTTAGAACAAAGCGGGGTAGTGGGCGAGCCCCTCAAAAAAAAAAGAATCAAAAAAAGGA 60 consensus_942#0 ---------------------GATTTGGAAAAGATTTGGNGCATCCAAAAGGTGGGGTTT 39 consensus_942#1 GAAAAAAAGTAGTAGTGGTATGNTTTGGAAAANATTTGGAGCATC-AAAAGGTGGGGTTT 119 * ********* ****** ***** ************** consensus_942#0 NTGTGTGCTAATGGNGGAATTTCGATCACNTTGTGGTGCNAAAAAAAAATGGCAGCGATT 99 consensus_942#1 GTGTGTGNTAATGGAGGAATTTCGATCNCATTGTGGTGCAAAAAAAAAATGGCANCGATT 179 ****** ****** ************ * ********* ************** ***** consensus_942#0 TGGGAGGGTGAGGTGATTATGAAAATGGATCGTCCATTTTACGATTCCAAAGAGATTTTG 159 consensus_942#1 TGGGAGGGTNAGGTGATTATGAAAATGGATCGTCCNTTTTCCGATTCCNAAGGGTTTTTG 239 ********* ************************* **** ******* *** * ***** consensus_942#0 GTTTTTATTCTTTCGTTTGTTCGTGTAAAGTTCACCGAGTGCCTCCTGTTTCTGTTNATA 219 consensus_942#1 GTTTTTNTTAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA 299 ****** ** *** * * * * consensus_942#0 TTGTTGATGATTGATTTAGATTTCGACCAGAGTTTGAATTCCAAGAGACTATGTATATAT 279 consensus_942#1 ------------------------------------------------------------ consensus_942#0 TNTATGTTCAACTTGAAAAAAAAAAAAAAAAAAAA 314 consensus_942#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||