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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 834 fasta sequence
[TGGCGCAGCTGGTCGGGGCGGACCTCGGGGGGCTCATCTCCAAGATCATCCAGGCGGCCGCGACGGCTCGCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCTACGACCTGCTGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGCCGCTGGCCTTGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGCACAAGGGCCCAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCGTGCAGGCTAGGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCATCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAGGACCATGGCATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTACTCCATGGGGACGGCGAATGCGAGAAATTCACCATGCCACAGCTCGCGATGGCGACCAACAACTTCGCCGTGGACAGGCAGATCGGTGAAGGCCGCAGCTTTGGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGCATCTCCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCCGCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTT---GCGGCGGCGACGACGACGTCGTCGGCTGAGGACGAGGACTGCCTCCTTGTCTACGAGTACATCGACAACGGCACGCTCTACGATCACCTCCACGGATCAGATGGAG]
[+] EMBL CB668017 [TGGCGCAGCTGGTCGGGGCGGACCTCGGGGGGCTCATCTCCAAGATCATCCAGGCGGCCGCGACGGCTCGCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCTACGACCTGCTGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGCCGCTGGCCTTGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGCACAAGGGCCCAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCGTGCAGGCTAGGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCATCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAGGACCATGGCATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTACTCCATGGGGACGGCGAATGCGAGAAATTCACCATGCCACAGCTCGCGATGGCGACCAACAACTTCGCCGTGGACAGGCAGATCGGTGAAGGCCGCAGCTTTGGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGCATCTCCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCCGCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTT GCGGCGGCGACGACGACGTCGTCGGCTGAGGACGAGGACTGCCTCCTTGTCTACGAGTACATCGACAACGGCACGCTCTACGATCACCTCCACGGATCAGAT ]
[+] EMBL CB668061 [TGGCGCTTCTGGTCGGGGCGGACCTCGGGGGGCTCATCTCCAAGATCATCCAGGCGGCCGCGACGGCTCGCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCTACGACCTGCTGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGCCGCTGGCCTTGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGCACAAGGGCCCAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCGTGCAGGCTAGGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCATCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAGGACCATGGCATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTACTCCATGGGGACGGCGAATGCGAGAAATTCACCATGCCACAGCTCGCGATGGCGACCAACAACTTCGCCGTGGACAGGCAGATCGGTGAAGGCCGCAGCTTTGGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGCATCTCCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCCGCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTT GCGGCGGCGACGACGACGTCGTCGGCTGAAGACGAGGACTGCCTCCTTGTCTACGAGTACATCGACAACG ]
[+] EMBL AY224427 [ CGGCTGGCTGACAAGATCAGGAACGTGCAGACTAGGATCGACTCCTACCTCCTCTTCCTCCCCATCATCAGCCACATCGACATCATCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAGGACCATGGCATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTACTCCATGGGGACGGCGAATGCGAGAAATTCACCATGCCACAGCTCGCGATGGCGACCAACAACTTCGCCGTGGACAGGCAGATCGGTGAAGGCCGCAGCTTTGGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGCATCTCCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCCGCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTTGCGGCGGCGGCGACGACGACGTCGTCGGCTGAGGACGAGGACTGCCTCCTTGTCTACGAGTACATCGACAACGGCACGCTCTACGATCACCTCCACGGATCAGATGGA ]
[-] EMBL CB668062 [ CTGCCTCCTTGTCTACGAGTACATCGACAACGGCACGCTCTACGATCACCTCCACGGATCAGATGGAG]
consensusID : consensus_9426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[AATCCTCGAGAGAGTTTGCAAGATGTGGGGGGAGCTGGGGAACGCGGCAACGGTGGCGCAGCTGGTCGGGGCGGACCTCGGGGGGCTCATCTCCAAGATCATCCAGGCGGCCGCGACGGCTCGCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCTACGACCTGCTGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGCCGCTGGCCTTGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGCACAAGGGCCCAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCGTGCAGGCTAGGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCATCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAGGACCATGGCATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTAGAGGAATCGTAGATCAAGCTAGCTACCTCTTCCTTATTTTTGATGAAACTCATCACTACTCTGTGCTTT]
[+] EMBL AK072505 [AATCCTCGAGAGAGTTTGCAAGATGTGGGGGGAGCTGGGGAACGCGGCAACGGTGGCGCAGCTGGTCGGGGCGGACCTCGGGGGGCTCATCTCCAAGATCATCCAGGCGGCCGCGACGGCTCGCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCTACGACCTGCTGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGCCGCTGGCCTTGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGCACAAGGGCCCAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCGTGCAGGCTAGGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCATCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAGGACCATGGCATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTAGAGGAATCGTAGATCAAGCTAGCTACCTCTTCCTTATTTTTGATGAAACTCATCACTACTCTGTGCTTT]
consensusID : consensus_9426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[TGAAGGAGTAGAAATGCAGGACCTGGCATCTCCCTCTGCGACTCCCATCCTGCTTAACGACGGCTGGTACTCATGGGGACGGCGAATGCGAGAAATTCACCATGCCACAACTCGCGATGGCGACCAACAACTTCGCCGTGGACAGGCAGATCGGTGAAGGCCGCAGCTTTGGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGCATCTCCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCCGCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTTGCGGCGGCGACGACGACGTCGTCGGCTGAGGACGAGGACTGCCTCCTTGTCTACGAGTACATCGACAACGGCACGCTCTACGATCACCTCCACGGATCAGATGGA]
[+] EMBL CF312159 [TGAAGGAGTAGAAATGCAGGACCTGGCATCTCCCTCTGCGACTCCCATCCTGCTTAACGACGGCTGGTACTCATGGGGACGGCGAATGCGAGAAATTCACCATGCCACAACTCGCGATGGCGACCAACAACTTCGCCGTGGACAGGCAGATCGGTGAAGGCCGCAGCTTTGGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGCATCTCCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCCGCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTTGCGGCGGCGACGACGACGTCGTCGGCTGAGGACGAGGACTGCCTCCTTGTCTACGAGTACATCGACAACGGCACGCTCTACGATCACCTCCACGGATCAGATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9426#0 TGGCGCAGCTGGTCGGGGCGGACCTCGGGGGGCTCATCTCCAAGATCATCCAGGCGGCCG 60
consensus_9426#2 ------------------------------------------------------------
consensus_9426#1 ------------------------------------------------------------
consensus_9426#0 CGACGGCTCGCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCT 120
consensus_9426#2 ------------------------------------------------------------
consensus_9426#1 ------------------------------------------------------------
consensus_9426#0 ACGACCTGCTGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGC 180
consensus_9426#2 ------------------------------------------------------------
consensus_9426#1 ------------------------------------------------------------
consensus_9426#0 CGCTGGCCTTGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGC 240
consensus_9426#2 ------------------------------------------------------------
consensus_9426#1 ------------------------------------------------------------
consensus_9426#0 ACAAGGGCCCAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCG 300
consensus_9426#2 ------------------------------------------------------------
consensus_9426#1 ------------------------------------------------------------
consensus_9426#0 TGCAGGCTAGGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCA 360
consensus_9426#2 ------------------------------------------------------------
consensus_9426#1 ---------------------------------------------------------AAT 3
consensus_9426#0 TCCACTGCCTCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAG-- 418
consensus_9426#2 ---------------------------------------TGAAGGAGTAGAAATGCAG-- 19
consensus_9426#1 CCTCGAGAGAGTTTGCAAGATGTGGGGGGAGCTGGGGAACGCGGCAACGGTGGCGCAGCT 63
* ****
consensus_9426#0 GACCATGGC--ATCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTACTC 476
consensus_9426#2 GACC-TGGC--ATCTCCCTCTGC-GACTCCCA--TCCTGCTT-AACGACGGCTGGTACTC 72
consensus_9426#1 GGTCGGGGCGGACCTCGGGGGGCTCATCTCCAA-GATCATCCAGGCGGCCGCGACGGCTC 122
* * *** * *** ** * *** ** * ** ***
consensus_9426#0 CATGGGG-ACGGCGAA-TGCGAGAAATTCACCATGC-------CACAGCTCGCGA----- 522
consensus_9426#2 -ATGGGG-ACGGCGAA-TGCGAGAAATTCACCATGC-------CACAACTCGCGA----- 117
consensus_9426#1 GCCGGAACAAGGCGGAGTGCGAGCAGCTCGCCGTCCGCGCGTCCATGATCTACGACCTGC 182
** * **** * ****** * ** ** * * ** ***
consensus_9426#0 TGGCG-ACCAACAACTTC--GCCGTGGACAGGCAGATCGGTG----AAGGCCGCAGCTTT 575
consensus_9426#2 TGGCG-ACCAACAACTTC--GCCGTGGACAGGCAGATCGGTG----AAGGCCGCAGCTTT 170
consensus_9426#1 TGCCGCACCTGCAACACCCGGAGGTGGTGCGGCGGCCGGAGGTCCTGCGGCCGCTGGCCT 242
** ** *** **** * * **** *** * * * ****** * *
consensus_9426#0 GGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGC- 634
consensus_9426#2 GGCATGATGATGTACAAGGGAAGGCTTCCCGACCGGCGCGAGGTGGCCATCAGACGCGC- 229
consensus_9426#1 TGCTCGAGGACACGCTCCGGGAGGCTCACCAGCTCGTGACTTGCTGCCAGCACAAGGGCC 302
** ** ** * ** ***** ** * * * * **** ** * * **
consensus_9426#0 --ATCT------CCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCC- 685
consensus_9426#2 --ATCT------CCGCGCAGGAAGGGGGATTTCCTGAGGGAGCTCGCAATCCTCTCCCC- 280
consensus_9426#1 CAACCTACCGGTTCGTGATGGCGGGGCGGCTGGCTGACAAGATCAGGAGCGTGCAGGCTA 362
* ** ** * ** *** * * **** * * * *
consensus_9426#0 -GCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTTG-CGGCGGCGACGACG 743
consensus_9426#2 -GCTCCGCCACGACCACATCGTCCGCCTCCTTGGCTGCTGCGTTG-CGGCGGCGACGACG 338
consensus_9426#1 GGATCGACTCCTACCTCCTCTTCCTCCCGCTCATCAGCCACATCGACATCATCCACTGCC 422
* ** * * *** * ** *** ** ** * ** * * * * * * ** *
consensus_9426#0 ACGTCGTCGGCTG-AGGACGAGGACTGCCTCCT-TGTCTACGAGTACATCGACAACGGCA 801
consensus_9426#2 ACGTCGTCGGCTG-AGGACGAGGACTGCCTCCT-TGTCTACGAGTACATCGACAACGGCA 396
consensus_9426#1 TCGACCAGATCCACAGAATGCTCATTTCAACCGGCGACGGCGATTGCAG-GACCATGGCA 481
** * * ** * * * * * ** * * *** * ** *** * ****
consensus_9426#0 CGCTCTACGATCACCTCCACGGATCAGATGGAG--------------------------- 834
consensus_9426#2 CGCTCTACGATCACCTCCACGGATCAGATGGA---------------------------- 428
consensus_9426#1 TCTCCCTCTGCAGACTCCCAGTCCCTGCTTCAACGACGGCTGGTAGAGGAATCGTAGATC 541
* * **** * * * * *
consensus_9426#0 ------------------------------------------------------
consensus_9426#2 ------------------------------------------------------
consensus_9426#1 AAGCTAGCTACCTCTTCCTTATTTTTGATGAAACTCATCACTACTCTGTGCTTT 595
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||