These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1316 fasta sequence [CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTTCATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATAATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAGTGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAAGGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGAGTTTTGTAGAAGACTCAGAAACTAAATCATCTGGAAAGTTTGGATCTTTCTCAGCTCCTAGGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTGATAAATCATGCCCAGAGAATACAGAGGGAGAGGCTAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGTGATGATGCAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCTAAAACACTAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGAATTGTCAATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGTAAGGACTCTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAGCCTGAGGAAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACTGTGAAAGGGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATAAGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAGAGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTTTTATCAAGCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTAATTTTGGAGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTCTTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAATGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTATTTGATCAACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCTATG] [+] EMBL AK059666 [CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTTCATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATAATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAGTGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAAGGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGAGTTTTGTAGAAGACTCAGAAACTAAATCATCTGGAAAGTTTGGATCTTTCTCAGCTCCTAGGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTGATAAATCATGCCCAGAGAATACAGAGGGAGAGGCTAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGTGATGATGCAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCTAAAACACTAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGAATTGTCAATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGTAAGGACTCTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAGCCTGAGGAAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACTGTGAAAGGGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATAAGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAGAGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTTTTATCAAGCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTAATTTTGGAGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTCTTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAATGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTATTTGATCAACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCTATG] consensusID : consensus_944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [TTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTTCTTAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTTTGGGGGGGTTTTTAAAATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCTGGGGTTCCCCAATTTAATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAAAAAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGGCCCCCCTTTTCCTCGGGGGTTTTAGGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCCTTTTTGGGGGGTTCCCCAAGGGTTTTTTTTGC] [+] EMBL CF308816 [TTTGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTTCTTAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTTTGGGGGGGTTTTTAAAATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCTGGGGTTCCCCAATTTAATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAAAAAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGGCCCCCCTTTTCCTCGGGGGTTTTAGGGTTTCCCCCTTTAAAAAAAAAACCCCTTTTCCCTTTTTGGGGGGTTCCCCAAGGGTTTTTTTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_944#0 CATCTGATGGCGTTATTTTTGTCAGCATGGAAATCTTCCGACCTCAGAAGGAACTTGCTT 60 consensus_944#1 ------------------------------------------------------------ consensus_944#0 CATCACAGTCAGGATTGAAAGGGAAGTTCAAAATAACAACAAGATGCCTATGGCTTGATA 120 consensus_944#1 ------------------------------------------------------------ consensus_944#0 ATGGAAGACTATTAGATGCACTTTACAAAGCTGCATATGCTGCATTATCAAGTTGTCCAG 180 consensus_944#1 -----------TTTGGTGTA----AGAAGACACCAAATGCTA-ATCCGAAGGCTTTCAAT 44 ** * ** * * ** * ** ***** ** * * * ** * consensus_944#0 TGAATTGTCCACTTAGTCACATGGAGAGGATGGTATCTGAAATCTTGAGGAAAATGGTAA 240 consensus_944#1 TGAGCTACCCAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 104 *** * *** * * * ** * * * *** * **** ** consensus_944#0 GGAAGTATAGTGGGAAGAGGCCTGATGTCATTGCGGTTGCTACAGAGAACACAACAGTGA 300 consensus_944#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC 164 ** * * ** * * * * * * ** * ** * consensus_944#0 GTTTTGTAGAAGA-CTCAGAAACTAAATCATCTGGAAAGTTTGGATCTT-TCTCAGCTCC 358 consensus_944#1 TTTTTTTCCCTTTTCTTAAAAAGGGGGAAATTCCGGGCCCTAAAATTAAATTCCCCCTTT 224 **** * ** * *** ** * * ** * * ** consensus_944#0 TAGGCATTCGAGCAGGAGTTCAGGTAGGGGTCTTGAAGAAAGTG--ATAAATCATGCCCA 416 consensus_944#1 TGGGGGGGTTTTTAAAATTAAGGGGCCGGGTTTTTAAAACCTTGGGATGGGAAAAACCCT 284 * ** * * * ** **** ** ** * ** ** * *** consensus_944#0 GAGAATACAGAGGGAGAGGC---TAAAGAAAATCTTCCTGATGTCCTGGGAACAACACGT 473 consensus_944#1 GGGGTTCCCCAATTTAATCCCTTTGGAAAAAATCCCCTTTTCCCCCTTTGGGTTAAAAAA 344 * * * * * * * * * ****** * * *** * * * consensus_944#0 GATGATGCAACCACAAGCTCCAATGGCGAAGCATTTTTCTCCTCAGATTTGCATAAGCCT 533 consensus_944#1 AAAAAGGCCCCCCCCAATCCCCTTTCCAAAA-ATTTGGCCCCCCTTTTCCTCGGGGGTTT 403 * * ** ** * * ** * * ** **** * ** * * * * * consensus_944#0 AAAACACTAGAGCATTTTTGGGACTCATTCAAATCCCCTACAGCTGTAAAAATTGCAAGA 593 consensus_944#1 TAGGGTTT----CCCCCTTTAAA---AAAAAAACCCCTTTTCCCTTT-----TTGGGGGG 451 * * * ** * * *** *** * ** * *** * consensus_944#0 ATTGTCAATGGTTCAGCTCAAGGGAGTAAATCAAAGATTGGCAAGATCAGCATAGTGGGT 653 consensus_944#1 TTCCCCAAGGGTTTTTTTTGC--------------------------------------- 472 * *** **** * consensus_944#0 AAGGACTCTAGCGATCCTTCTTCTGCTCCAGTTAAATCTTCAAAAAAGAACAAGTGGAAG 713 consensus_944#1 ------------------------------------------------------------ consensus_944#0 CCTGAGGAAATTAAGAGCTTAATTCAGATGCGTGGCGAAATGAATGAGCAATTTCAGACT 773 consensus_944#1 ------------------------------------------------------------ consensus_944#0 GTGAAAGGGAGAATGGTTCTGTGGGAAGAGATATCTTCTAGCATGTTGAGCCAGGGGATA 833 consensus_944#1 ------------------------------------------------------------ consensus_944#0 AGTCGTACACCAGCACAGTGCAAGTCTCTATGGACATCATTGGTTCAGAAATATGAGGAG 893 consensus_944#1 ------------------------------------------------------------ consensus_944#0 AGCAAGAAAGATGAGGAAAGCGTAAAGACGTGGCCGTATTTCTTGGACATGGACAGGGTT 953 consensus_944#1 ------------------------------------------------------------ consensus_944#0 TTATCAAGCCAAGGGGAAATGGCAACCCAATGATCCCAAGGCCGTAGTTTAGTGGTTGTA 1013 consensus_944#1 ------------------------------------------------------------ consensus_944#0 ATTTTGGAGGGTGATGGCATAATCAATCAAGTGGCAGGATGAGATGGCTGCAGCGTGTTC 1073 consensus_944#1 ------------------------------------------------------------ consensus_944#0 TTCTCCAGAGAATATACATGCCATAATTCATTCCACGAAAAGGGAGGCAGGCACTTGGAA 1133 consensus_944#1 ------------------------------------------------------------ consensus_944#0 TGACTAAGCTGCTACGTATTCACCATGAGTGTGCTACAGGGCTAGGGATAGCTGATATTA 1193 consensus_944#1 ------------------------------------------------------------ consensus_944#0 TTTGATCAACTATACTAGATTAAGTAATTGAATAGCTAAGTTTTGTTGTGCTATTATTTT 1253 consensus_944#1 ------------------------------------------------------------ consensus_944#0 TGGTGTAAGAAGACACCAAATGCTAATCCGAAGGCTTTCAATTGAGCTACCCACATGCCT 1313 consensus_944#1 ------------------------------------------------------------ consensus_944#0 ATG 1316 consensus_944#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||