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Oryza sativa
cluster # 9441 cluster # 9441       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9441#0 length = 1620 sequences # 4  
consensus_9441#1 length = 1450 sequences # 1  
consensus_9441#2 length = 409 sequences # 1  

consensusID : consensus_9441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1620
fasta sequence
                              [CCCTCCCACACGCAAGCCCCGGGTACTACGCTGCCCGTCCAGCGTTCAATCGATCGATCGATCCCCGCGGCTCGGTTTGTGTTGCGTTCTTCCAGATCGATTTGATAGATGGGTGCTCATGGAGACCACCGCCACCACCACCACCATCAAGAAGCCGGGGTGCTCGTCGACGAGGAGGAGGAGGAGGTGATCGAGCAGGCTTGCGGTGGCCCGACGAGCGGCGTGGTGGAGCAAGAGGTGGGGGGAGACGGTGGTGGAGTGTGCCAAGATGCTGCCGGCATGGTGTTCGAGGCGACCAGTAGCGTCGGGAGCGTGAGCGCCACCATGGGGCCGCCGCCGATCATGTGCTGGCCACCGCCGGCGCAGTCTGTCCACGGTGCAATCCACCACCACCACAACCTAGGCGGCGGCGGCGGCCAGCAGAGCCCGTTCTTCCCGCTGCTGCCGCCCCTGCCCCCTCAGCCCCCGCCGCCACCCCCGTTCTTCGCCGACTTCTACGCGCGGCGGGCGCTCCAGTACGCGTACGACCACTCCGGCGGCGCGTCGTCGTCGTCCGACCCGCTCGGCCTCGGCGGGCTCTACATGGGTCACCACGGCTCCCACGTCGCCGGCATGATGATGCCGCCGCCCTTCGCTCCGTCGCCGTTCGGCGACC-TCGGCCGGATGACCGCGCAGGAGATCATGGACGCC-AAGGCGCTGGCCGC-GTCCAAGAGCCACAGCGAGGCCGAGCGCCGCCGCCGCGAGCGGATCAACGCGCACCTCGCCCGCCTCCGCAGCCTCCTCCCCAACACAACCAAGACGGACAAGGCGTCGCTGCTCGCGGAGGTGATCCAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGAGATCACGGAGGAGGCGTGCCCGCTCCCCACCGAGTCGGACGAGCTCACCGTCGACGCGTCGAGCGAC-GAGGACGGGCGCCTCGTCGTGCGCGCGTCGCTCTGCTGCGACGACCGCACCGACCTCCTGCCGGACCTCATCCGCGCGCTCAAGGCGCTCCGGCTGCGCGCGCTCAAGGCCGAGATCACCACACTCGGCGGCCGCGTCAAGAACGTGCTCGTCGTCACCGGGGACGACAGCGCCGCCGCCGCCGCCTGCGCGGGGACGGACGGGGACGGCGAGCAGCAGGAGGAGGCGATGCAGGCGCCCATGTCGCCGCAGCACACGGTCGCGTCCATCCAGGACGCGCTGCGCGCCGTCATGGAGCGGACGGCATCGGCCACCGAGGAGTCCGGGGGGTCGGGCGCCGGCGGTGGGCTCAAGCGGCAGCGCACCACGAGCCTCTCGGCGATCCTAGAGAACAGGTCTATCTAAGCAAGCATCCACACATGATGAGATGTGCAAAACGAAACGAAAAAAAAAAACAGTAAAAACAACGTACACCACACCACAGTCCACACTATCTCAAAGCTGATCATAATACCATGCAGCTAGCTAGCTAGATTATGGATCACATGTTCCCCAAGTACAACCGTTTTCCATTTCTTTAATTTTAGTTTTCTCTCCCATTGATTTTATACTAGTACTGCTTTGTGTGTGTGAATCTTGGTGCTGTATATCTGCATGGCATCTCTCAGCAATCAATACAAGGCCACA]

[+] EMBL AK106649             [CCCTCCCACACGCAAGCCCCGGGTACTACGCTGCCCGTCCAGCGTTCAATCGATCGATCGATCCCCGCGGCTCGGTTTGTGTTGCGTTCTTCCAGATCGATTTGATAGATGGGTGCTCATGGAGACCACCGCCACCACCACCACCATCAAGAAGCCGGGGTGCTCGTCGACGAGGAGGAGGAGGAGGTGATCGAGCAGGCTTGCGGTGGCCCGACGAGCGGCGTGGTGGAGCAAGAGGTGGGGGGAGACGGTGGTGGAGTGTGCCAAGATGCTGCCGGCATGGTGTTCGAGGCGACCAGTAGCGTCGGGAGCGTGAGCGCCACCATGGGGCCGCCGCCGATCATGTGCTGGCCACCGCCGGCGCAGTCTGTCCACGGTGCAATCCACCACCACCACAACCTAGGCGGCGGCGGCGGCCAGCAGAGCCCGTTCTTCCCGCTGCTGCCGCCCCTGCCCCCTCAGCCCCCGCCGCCACCCCCGTTCTTCGCCGACTTCTACGCGCGGCGGGCGCTCCAGTACGCGTACGACCACTCCGGCGGCGCGTCGTCGTCGTCCGACCCGCTCGGCCTCGGCGGGCTCTACATGGGTCACCACGGCTCCCACGTCGCCGGCATGATGATGCCGCCGCCCTTCGCTCCGTCGCCGTTCGGCGACC TCGGCCGGATGACCGCGCAGGAGATCATGGACGCC AAGGCGCTGGCCGC GTCCAAGAGCCACAGCGAGGCCGAGCGCCGCCGCCGCGAGCGGATCAACGCGCACCTCGCCCGCCTCCGCAGCCTCCTCCCCAACACAACCAAGACGGACAAGGCGTCGCTGCTCGCGGAGGTGATCCAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGAGATCACGGAGGAGGCGTGCCCGCTCCCCACCGAGTCGGACGAGCTCACCGTCGACGCGTCGAGCGAC GAGGACGGGCGCCTCGTCGTGCGCGCGTCGCTCTGCTGCGACGACCGCACCGACCTCCTGCCGGACCTCATCCGCGCGCTCAAGGCGCTCCGGCTGCGCGCGCTCAAGGCCGAGATCACCACACTCGGCGGCCGCGTCAAGAACGTGCTCGTCGTCACCGGGGACGACAGCGCCGCCGCCGCCGCCTGCGCGGGGACGGACGGGGACGGCGAGCAGCAGGAGGAGGCGATGCAGGCGCCCATGTCGCCGCAGCACACGGTCGCGTCCATCCAGGACGCGCTGCGCGCCGTCATGGAGCGGACGGCATCGGCCACCGAGGAGTCCGGGGGGTCGGGCGCCGGCGGTGGGCTCAAGCGGCAGCGCACCACGAGCCTCTCGGCGATCCTAGAGAACAGGTCTATCTAAGCAAGCATCCACACATGATGAGATGTGCAAAACGAAACGAAAAAAAAAAACAGTAAAAACAACGTACACCACACCACAGTCCACACTATCTCAAAGCTGATCATAATACCATGCAGCTAGCTAGCTAGATTATGGATCACATGTTCCCCAAGTACAACCGTTTTCCATTTCTTTAATTTTAGTTTTCTCTCCCATTGATTTTATACTAGTACTGCTTTGTGTGTGTGAATCTTGGTGCTGTATATCTGCATGGCATCTCTCAGCAATCAATACAAGGCCACA]
[+] EMBL AU065514             [                                                 TCGATCGATCGATCCCCGCGGCTCGGTTTGTGTTGCGTTCTTCCAGATCGATTTGATAGATGGGTGCTCATGGAGACCACCGCCACCACCACCACCATCAAGAAGCCGGGGTGCTCGTCGACGAGGAGGAGGAGGAGGTGATCGAGCAGGCTTGCGGTGGCCCGACGAGCGGCGTGGTGGAGCAAGAGGTGGGGGGAGACGGTGGTGGAGTGTGCCAAGATGCTGCCGGCATGGTGTTCGAGGCGACCAGTAGCGTCGGGAGCGTGAGCGCCACCATGGGGCCGCCGCCGATCATGTGCTGGCCACCGCCGGCGCAGCCTGTCCACGGTGCAATCCACCACCACCACAACCTAGGCGGCGGCGGCGGCCAGCAGAGCCCGTTCTTCCCGCTGCTGCCG CCCTGCCCCCTCAGCCCCCGCCG CACCCCCGTTCTTCGCCGACTTCTACGCGCGGCGGGCGCTCCAGTACGCGTACGACCACTCCGGCGGCGCGTCGTCGTCGTCCGACCCGCTCGG CTCGGCGGGCTCTACATGGGTCACCACGGCTTCCACGTCGCCGGCATGATGATGCCGCCG CCTTCGCTNCGTCGCCGTTCGGCGACCTTGGGCCGGATGACCGGGCANGAGATCATGGACGCCAAAGGCGCTTGCCGCGGTCCAAAAACCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU093196             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTCCAGTACGCGTACGACCACTCCGNCGGCGCGTCGTCGTCGTCCGACCCGCTCGGCCTCGGCGGGCTCTACATGGGTCACCACGGCTCCCACGTCGCCGGCATGATGATGCCGCCGCCCTTCGCTCCGTCGCCGTTCGGCGACC TCGGCCGGATGACCGCGCAGGAGATCATGGACGCC AAGGCGCTGGCCGC GTCCAAGAGCCACAGCGAGGCCGAGCGCCGCCGCCGCGAGCGGATCAACGCGCACCTCGCCCGCCTCCGCAGCCTCCTCCCCAACACAACCAAGACGGACAAGGCGTCGCTGCTCGCGGAGGTGATCCAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGAGATCACGGAGGAGGCGTGCCCGCTCCCCACCGAGTCGGACGAGCTCACCGTCGACGCGTCGAGCGAC GAGGACGGGCGCCTCGTCGTGCGCGCGTCGCTCTGCTGCGACGACCGCACCGACCTCCTGCCGGACCTCATCCGCGCGCTCAAGGCGCTCCGGCTGCGCGCGCTCAAGGCCGAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU068689             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCCGGATGACCGCGCAGGAGATCATGGACGCC AAGGCGCTGGCCGC GTCCAAGAGCCACAGCGAGGCCGAGCGCCGCCGCCGCGAGCGGATCAACGCGCACCTCGCCCGCCTCCGCAGCCTCCTCCCCAACACAACCAAGACGGACAAGGCGTCGCTGCTCGCGGAGGTGATCCAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGAGATCACGGAGGAGGCGTGCCCGCTCCCCACCGAGTCGGACGAGCTCACCGTTGACGCGTCGAGCGACGGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_9441#0 CCCTCCCACACGCAAGCCCCGGGTACTACGCTGCCCGTCCAGCGTTCAATCGATCGATCG ATCCCCGCGGCTCGGTTTGTGTTGCGTTCTTCCAGATCGATTTGATAGATGGGTGCTCAT GGAGACCACCGCCACCACCACCACCATCAAGAAGCCGGGGTGCTCGTCGACGAGGAGGAG GAGGAGGTGATCGAGCAGGCTTGCGGTGGCCCGACGAGCGGCGTGGTGGAGCAAGAGGTG GGGGGAGACGGTGGTGGAGTGTGCCAAGATGCTGCCGGCATGGTGTTCGAGGCGACCAGT AGCGTCGGGAGCGTGAGCGCCACCATGGGGCCGCCGCCGATCATGTGCTGGCCACCGCCG GCGCAGTCTGTCCACGGTGCAATCCACCACCACCACAACCTAGGCGGCGGCGGCGGCCAG CAGAGCCCGTTCTTCCCGCTGCTGCCGCCCCTGCCCCCTCAGCCCCCGCCGCCACCCCCG TTCTTCGCCGACTTCTACGCGCGGCGGGCGCTCCAGTACGCGTACGACCACTCCGGCGGC GCGTCGTCGTCGTCCGACCCGCTCGGCCTCGGCGGGCTCTACATGGGTCACCACGGCTCC CACGTCGCCGGCATGATGATGCCGCCGCCCTTCGCTCCGTCGCCGTTCGGCGACCTCGGC CGGATGACCGCGCAGGAGATCATGGACGCCAAGGCGCTGGCCGCGTCCAAGAGCCACAGC GAGGCCGAGCGCCGCCGCCGCGAGCGGATCAACGCGCACCTCGCCCGCCTCCGCAGCCTC CTCCCCAACACAACCAAGACGGACAAGGCGTCGCTGCTCGCGGAGGTGATCCAGCACGTC AAGGAGCTGAAGCGGCAGACGTCGGAGATCACGGAGGAGGCGTGCCCGCTCCCCACCGAG TCGGACGAGCTCACCGTCGACGCGTCGAGCGACGAGGACGGGCGCCTCGTCGTGCGCGCG TCGCTCTGCTGCGACGACCGCACCGACCTCCTGCCGGACCTCATCCGCGCGCTCAAGGCG CTCCGGCTGCGCGCGCTCAAGGCCGAGATCACCACACTCGGCGGCCGCGTCAAGAACGTG CTCGTCGTCACCGGGGACGACAGCGCCGCCGCCGCCGCCTGCGCGGGGACGGACGGGGAC GGCGAGCAGCAGGAGGAGGCGATGCAGGCGCCCATGTCGCCGCAGCACACGGTCGCGTCC ATCCAGGACGCGCTGCGCGCCGTCATGGAGCGGACGGCATCGGCCACCGAGGAGTCCGGG GGGTCGGGCGCCGGCGGTGGGCTCAAGCGGCAGCGCACCACGAGCCTCTCGGCGATCCTA GAGAACAGGTCTATCTAAGCAAGCATCCACACATGATGAGATGTGCAAAACGAAACGAAA AAAAAAAACAGTAAAAACAACGTACACCACACCACAGTCCACACTATCTCAAAGCTGATC ATAATACCATGCAGCTAGCTAGCTAGATTATGGATCACATGTTCCCCAAGTACAACCGTT TTCCATTTCTTTAATTTTAGTTTTCTCTCCCATTGATTTTATACTAGTACTGCTTTGTGT GTGTGAATCTTGGTGCTGTATATCTGCATGGCATCTCTCAGCAATCAATACAAGGCCACA



consensusID : consensus_9441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1450
fasta sequence
                              [GAACAGCTGCTGCTGCGAGTTGTAGTAGTAGTAGAAGAAGAAAAAGCAAGAAAAGGTTGTTGCATAGATCGATCCATCGATGCGCACGATCGAGTTTATTAATTAGCTCAACGAAAGAAGAAGCATCAGCAAGAAGAGCCAAGAACTCGATCGATCCAAGAAGGTAATTGATCAGCTGATTGGTTGGTTTGGTTGTTGTGGTGGAGATGTGGGAAGCTGTAGGCGGCGGCGACGGCACGGCTCTCCTGCCGTGGCCCGGCTCGGCCGCGGCCGCGCCGCTCTACATGCCCCCGGCAGCAGCGGCAGCGGCGCCCTTCGCCGCCGGCGAGCAGCTGCCGGTGGAGCAGCCCTTCTACTTCGACGGAGGCGGAGGCGTGGCGGGGCATAATCACCATCCTCATCATCATCAGTACGGGATGGAGGCGCCGCCGCCGATGACGATGATGCAGATGGGCGGCGGGGGTTCGTCGTCGTCGAGGATGGTGGTGTCCGGGCTGCTCGGGACGCTGCAGGCGGAGCTCGGGAGGATGACGGCGAAGGAGATCATGGACGCCAAGGCGCTGGCGGCGTCGCGCAGCCACAGCGAGGCCGAGCGCCGCCGCCGCCAGCGCATCAACGGCCACCTCGCCAGGCTCCGCAGCCTCCTCCCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGCGATGATGGAGGACGGCGCCGCGGGAGGGGAGGCGGCGGCGGCGCCGGTGGTGCTGCTGCCGACGGAGGACGACGAGCTGGAGGTGGACGCGGCGGCGGACGAGGGAGGGAGGCTCGTGGCGAGGGCCTCGCTGTGCTGCGAGGACCGCGCCGACCTCATCCCGGGCATCGCCCGCGCGCTCGCCGCGCTCCGGCTGCGCGCCCGCCGCGCCGAGATCGCCACGCTCGGCGGCCGCGTCCGCAGCGTCCTCCTCATCGCCGCCGTCGAGGAGGAAGATCCAGACGAGGCCGGGAACGACGACGACGGCGAACACGGCTACGGCGTTGCCGCCTCGCACCGGAGGCACGAGCTCGTCGCGTCGATCCACGAGGCGCTGCGCGGCGTCATGAACCGCAAAGCGGCGAGCAGCGACACCTCCTCTTCCGGCGCCGGCGGCGGCGGTGGGAGCATCAAGAGGCAGCGGATGATCAGTGCACATGATCAGCAAGGTTCCTTCAATTCTAGTGGCTGGTAAAAACTCAAGTCGATCATCGATCCATCCATTAATTCCTGCAGCCTCATCAGAAGTAGCATGAAATATCCATGCTCTTGCTTATGCAACTCAACTTATATTAGTATAGTTATAAAGCTATATATAGCCGACTTAAAAAAAACTTAGAGTTTGGATCTTCTTTTTGGTGTTATGGTGTGTGCATGAGGGAAATCAAAATTAAAGGAAGG]

[+] EMBL AK109616             [GAACAGCTGCTGCTGCGAGTTGTAGTAGTAGTAGAAGAAGAAAAAGCAAGAAAAGGTTGTTGCATAGATCGATCCATCGATGCGCACGATCGAGTTTATTAATTAGCTCAACGAAAGAAGAAGCATCAGCAAGAAGAGCCAAGAACTCGATCGATCCAAGAAGGTAATTGATCAGCTGATTGGTTGGTTTGGTTGTTGTGGTGGAGATGTGGGAAGCTGTAGGCGGCGGCGACGGCACGGCTCTCCTGCCGTGGCCCGGCTCGGCCGCGGCCGCGCCGCTCTACATGCCCCCGGCAGCAGCGGCAGCGGCGCCCTTCGCCGCCGGCGAGCAGCTGCCGGTGGAGCAGCCCTTCTACTTCGACGGAGGCGGAGGCGTGGCGGGGCATAATCACCATCCTCATCATCATCAGTACGGGATGGAGGCGCCGCCGCCGATGACGATGATGCAGATGGGCGGCGGGGGTTCGTCGTCGTCGAGGATGGTGGTGTCCGGGCTGCTCGGGACGCTGCAGGCGGAGCTCGGGAGGATGACGGCGAAGGAGATCATGGACGCCAAGGCGCTGGCGGCGTCGCGCAGCCACAGCGAGGCCGAGCGCCGCCGCCGCCAGCGCATCAACGGCCACCTCGCCAGGCTCCGCAGCCTCCTCCCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGCGATGATGGAGGACGGCGCCGCGGGAGGGGAGGCGGCGGCGGCGCCGGTGGTGCTGCTGCCGACGGAGGACGACGAGCTGGAGGTGGACGCGGCGGCGGACGAGGGAGGGAGGCTCGTGGCGAGGGCCTCGCTGTGCTGCGAGGACCGCGCCGACCTCATCCCGGGCATCGCCCGCGCGCTCGCCGCGCTCCGGCTGCGCGCCCGCCGCGCCGAGATCGCCACGCTCGGCGGCCGCGTCCGCAGCGTCCTCCTCATCGCCGCCGTCGAGGAGGAAGATCCAGACGAGGCCGGGAACGACGACGACGGCGAACACGGCTACGGCGTTGCCGCCTCGCACCGGAGGCACGAGCTCGTCGCGTCGATCCACGAGGCGCTGCGCGGCGTCATGAACCGCAAAGCGGCGAGCAGCGACACCTCCTCTTCCGGCGCCGGCGGCGGCGGTGGGAGCATCAAGAGGCAGCGGATGATCAGTGCACATGATCAGCAAGGTTCCTTCAATTCTAGTGGCTGGTAAAAACTCAAGTCGATCATCGATCCATCCATTAATTCCTGCAGCCTCATCAGAAGTAGCATGAAATATCCATGCTCTTGCTTATGCAACTCAACTTATATTAGTATAGTTATAAAGCTATATATAGCCGACTTAAAAAAAACTTAGAGTTTGGATCTTCTTTTTGGTGTTATGGTGTGTGCATGAGGGAAATCAAAATTAAAGGAAGG]


>consensus_9441#1 GAACAGCTGCTGCTGCGAGTTGTAGTAGTAGTAGAAGAAGAAAAAGCAAGAAAAGGTTGT TGCATAGATCGATCCATCGATGCGCACGATCGAGTTTATTAATTAGCTCAACGAAAGAAG AAGCATCAGCAAGAAGAGCCAAGAACTCGATCGATCCAAGAAGGTAATTGATCAGCTGAT TGGTTGGTTTGGTTGTTGTGGTGGAGATGTGGGAAGCTGTAGGCGGCGGCGACGGCACGG CTCTCCTGCCGTGGCCCGGCTCGGCCGCGGCCGCGCCGCTCTACATGCCCCCGGCAGCAG CGGCAGCGGCGCCCTTCGCCGCCGGCGAGCAGCTGCCGGTGGAGCAGCCCTTCTACTTCG ACGGAGGCGGAGGCGTGGCGGGGCATAATCACCATCCTCATCATCATCAGTACGGGATGG AGGCGCCGCCGCCGATGACGATGATGCAGATGGGCGGCGGGGGTTCGTCGTCGTCGAGGA TGGTGGTGTCCGGGCTGCTCGGGACGCTGCAGGCGGAGCTCGGGAGGATGACGGCGAAGG AGATCATGGACGCCAAGGCGCTGGCGGCGTCGCGCAGCCACAGCGAGGCCGAGCGCCGCC GCCGCCAGCGCATCAACGGCCACCTCGCCAGGCTCCGCAGCCTCCTCCCCAACACCACCA AGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTCAAGGAGCTGAAGCGGC AGACGTCGGCGATGATGGAGGACGGCGCCGCGGGAGGGGAGGCGGCGGCGGCGCCGGTGG TGCTGCTGCCGACGGAGGACGACGAGCTGGAGGTGGACGCGGCGGCGGACGAGGGAGGGA GGCTCGTGGCGAGGGCCTCGCTGTGCTGCGAGGACCGCGCCGACCTCATCCCGGGCATCG CCCGCGCGCTCGCCGCGCTCCGGCTGCGCGCCCGCCGCGCCGAGATCGCCACGCTCGGCG GCCGCGTCCGCAGCGTCCTCCTCATCGCCGCCGTCGAGGAGGAAGATCCAGACGAGGCCG GGAACGACGACGACGGCGAACACGGCTACGGCGTTGCCGCCTCGCACCGGAGGCACGAGC TCGTCGCGTCGATCCACGAGGCGCTGCGCGGCGTCATGAACCGCAAAGCGGCGAGCAGCG ACACCTCCTCTTCCGGCGCCGGCGGCGGCGGTGGGAGCATCAAGAGGCAGCGGATGATCA GTGCACATGATCAGCAAGGTTCCTTCAATTCTAGTGGCTGGTAAAAACTCAAGTCGATCA TCGATCCATCCATTAATTCCTGCAGCCTCATCAGAAGTAGCATGAAATATCCATGCTCTT GCTTATGCAACTCAACTTATATTAGTATAGTTATAAAGCTATATATAGCCGACTTAAAAA AAACTTAGAGTTTGGATCTTCTTTTTGGTGTTATGGTGTGTGCATGAGGGAAATCAAAAT TAAAGGAAGG



consensusID : consensus_9441#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence
                              [CCACAGCGAGGCCGAGCGGCGGCGCCGGCAGCGCATCAACGGCCACCTCGCCAGGTCCGCAGCCTCCTACCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTGAAGGAGCTGAAGCGGCAGACGACGGCGATCGCGGCGGCAGCGGCGGCGGGGGATTACCACGGCAACGACGAGGACGACGACGATGCGGTGGTGGGGCGGCGGTCGGCGGCGGCGCAGCAGCTGCTGCCGACGGAGGCGGACGAGCTGGCGGTGGACGCGGCGGTGGACGCGGAAGGGAAGCTCGTGGTGCGTGCGTCGCTGTGCTGCGAGGACCGCCCCGACCTCATCCCGGACATCGCCCGGGCGNCTNTGCGTCCGCCTNCCGCGGCGCCGCGCCGAGATC]

[+] EMBL AU108162             [CCACAGCGAGGCCGAGCGGCGGCGCCGGCAGCGCATCAACGGCCACCTCGCCAGGTCCGCAGCCTCCTACCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTGAAGGAGCTGAAGCGGCAGACGACGGCGATCGCGGCGGCAGCGGCGGCGGGGGATTACCACGGCAACGACGAGGACGACGACGATGCGGTGGTGGGGCGGCGGTCGGCGGCGGCGCAGCAGCTGCTGCCGACGGAGGCGGACGAGCTGGCGGTGGACGCGGCGGTGGACGCGGAAGGGAAGCTCGTGGTGCGTGCGTCGCTGTGCTGCGAGGACCGCCCCGACCTCATCCCGGACATCGCCCGGGCGNCTNTGCGTCCGCCTNCCGCGGCGCCGCGCCGAGATC]


>consensus_9441#2 CCACAGCGAGGCCGAGCGGCGGCGCCGGCAGCGCATCAACGGCCACCTCGCCAGGTCCGC AGCCTCCTACCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAG CACGTGAAGGAGCTGAAGCGGCAGACGACGGCGATCGCGGCGGCAGCGGCGGCGGGGGAT TACCACGGCAACGACGAGGACGACGACGATGCGGTGGTGGGGCGGCGGTCGGCGGCGGCG CAGCAGCTGCTGCCGACGGAGGCGGACGAGCTGGCGGTGGACGCGGCGGTGGACGCGGAA GGGAAGCTCGTGGTGCGTGCGTCGCTGTGCTGCGAGGACCGCCCCGACCTCATCCCGGAC ATCGCCCGGGCGNCTNTGCGTCCGCCTNCCGCGGCGCCGCGCCGAGATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9441#1      ------------------------------------------------------------
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CCCTCCCACACGCAAGCCCCGGGTACTACGCTGCCCGTCCAGCGTTCAATCGATCGATCG 60
                                                                                  

consensus_9441#1      ------------------------------------------------------------
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      ATCCCCGCGGCTCGGTTTGTGTTGCGTTCTTCCAGATCGATTTGATAGATGGGTGCTCAT 120
                                                                                  

consensus_9441#1      -----------GAACAGCTGCTGCTG-CGAGTTGTAGTAGTAGTAGAAGAAGAAAAAGCA 48
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      GGAGACCACCGCCACCACCACCACCATCAAGAAGCCGGGGTGCTCGTCGACGAGGAGG-A 179
                                                                                  

consensus_9441#1      AGAAAAGGTTGTTGCATAGATCGATCCATCGATGCGCACGATCGAGTTTATTAATTAGCT 108
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      GGAGGAGGTGATCGAGCAGGCT--TGCGGTGGCCCG-ACGAGCGGCGTGGTGG---AGCA 233
                                                                                  

consensus_9441#1      CAACGAAAGAAGAAGCATCAGCAAGAAGAGCCAAGAACTCGATCGATCCAAGAAGGTAAT 168
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      AGAGGTGGGGGGAGACGGTGGTGGAGTGTGCCAAGA-TGCTGCCGGCATGGTGTTCGAGG 292
                                                                                  

consensus_9441#1      TGATCAGCTGATTGGTTGGTTTGGTTGTTGTGGTGGAGATGTGGGAAGCTGTAGGCGG-- 226
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CGACCAGTAGCGTCGGGAGCGTGAGCGCCACCATGGGGCCGCCGCCGATCATGTGCTGGC 352
                                                                                  

consensus_9441#1      CGGCGACGGCACGGCTCTCCTGCCGTG--GCCCGGCTCGGCCGCGGCCGCGCCGCTCTAC 284
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CACCGCCGGCGCAGTCTGTCCACGGTGCAATCCACCACCACCACAACCTAGGCGG-CGGC 411
                                                                                  

consensus_9441#1      ATGCCCCCGGCAGCAGCGGCAGCGGCGCCCTTCGCCGCCGGCGAGCAG-CTGCCGGTGGA 343
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      G-GCGGCCAGCAGAGCCCGTTCTTCCCGCTGCTGCCGCCCCTGCCCCCTCAGCCCCCGCC 470
                                                                                  

consensus_9441#1      GCAGCCCTTCTACTTCGACGGAGGCGGAGGCGTGGCGGGGCATAATCACCATCCTCATCA 403
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      GCCACCCCCGTTCTTCGCCG-ACTTCTACGCGCGGCGGGCGCT--CCAGTACGCGTACGA 527
                                                                                  

consensus_9441#1      TCATCAGTACGGGATGGAGGCGCCG------CCGC-CGATGACGATGA--TGCAGATGGG 454
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CCACTCCGGCGGCGCGTCGTCGTCGTCCGACCCGCTCGGCCTCGGCGGGCTCTACATGGG 587
                                                                                  

consensus_9441#1      -CGGCGGGGGTTCGTCGTCGTCGAGGATGGTGGTGTCCGGGCTGCTCGGGACGCTGCAG- 512
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      TCACCACGGCTCCCACGTCGCCG-GCATGATGATGCCGCCGCCCTTCGCTCCGTCGCCGT 646
                                                                                  

consensus_9441#1      --GCGGAGCTCGGGAGGATGACGGCGAAGGAGATCATGGACGCCAAGGCGCTGGCGGCGT 570
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      TCGGCGACCTCGGCCGGATGACCGCGCAGGAGATCATGGACGCCAAGGCGCTGGCCGCGT 706
                                                                                  

consensus_9441#1      CGCGCAGCCACAGCGAGGCCGAGCGCCGCCGCCGCCAGCGCATCAACGGCCACCTCGCCA 630
consensus_9441#2      -------CCACAGCGAGGCCGAGCGGCGGCGCCGGCAGCGCATCAACGGCCACCTCGCCA 53
consensus_9441#0      CCAAGAGCCACAGCGAGGCCGAGCGCCGCCGCCGCGAGCGGATCAACGCGCACCTCGCCC 766
                             ****************** ** *****  **** *******  ********* 

consensus_9441#1      GGCTCCGCAGCCTCCTCCCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGG 690
consensus_9441#2      GG-TCCGCAGCCTCCTACCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGG 112
consensus_9441#0      GCCTCCGCAGCCTCCTCCCCAACACAACCAAGACGGACAAGGCGTCGCTGCTCGCGGAGG 826
                      *  ************* ******** ************************** *******

consensus_9441#1      TGATCGAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGCGATGATGGAGG--ACGGCGC 748
consensus_9441#2      TGATCGAGCACGTGAAGGAGCTGAAGCGGCAGACGACGGCGATCGCGGCGGCAGCGGCGG 172
consensus_9441#0      TGATCCAGCACGTCAAGGAGCTGAAGCGGCAGACGTCGGAGATCACGGAGG--------- 877
                      ***** ******* ********************* *** ***   ** **         

consensus_9441#1      CGCGGGA---------------------------------------GGGGAGGCGG-CGG 768
consensus_9441#2      CGGGGGATTACCACGGCAACGACGAGGACGACGACGATGCGGTGGTGGGGCGGCGGTCGG 232
consensus_9441#0      ------A----------------------------------------------------- 878
                            *                                                     

consensus_9441#1      CGGCGCCGGTGGTGCTGCTGCCGACGGAGGACGACGAGCTGGAGGTGGACGCGGCGGCGG 828
consensus_9441#2      CGGCGGCGCAGCAGCTGCTGCCGACGGAGGCGGACGAGCTGGCGGTGGACGCGGCGGTGG 292
consensus_9441#0      -------GGCGTGCCCGCTCCCCACCGAGTCGGACGAGCTCACCGTCGACGCGTCGAGCG 931
                             *  *   * *** ** ** ***   ********    ** ****** **   *

consensus_9441#1      ACGAGGGAGGGAGGCTCGTGGCGAGGGCCTCGCTGTGCTGCGAGGACCGCGCCGACCTCA 888
consensus_9441#2      ACGCGGAAGGGAAGCTCGTGGTGCGTGCGTCGCTGTGCTGCGAGGACCGCCCCGACCTCA 352
consensus_9441#0      ACGAGGACGGGCGCCTCGTCGTGCGCGCGTCGCTCTGCTGCGACGACCGCACCGACCTCC 991
                      *** **  ***   ***** * * * ** ***** ******** ****** ******** 

consensus_9441#1      TCCCGGGCATCGCCCGCGCGCTCGCCGCGCTCCGGCTGCGCGCCCGCCGCGCCGAGATCG 948
consensus_9441#2      TCCCGGACATCGCCCGGGCGNCTNT-GCG-TCCGCCTNCCGCGGCGCCGCGCCGAGATC- 409
consensus_9441#0      TGCCGGACCTCATCCGCGCGCTCAAGGCGCTCCGGCTGCGCGCGCTCAAGGCCGAGATCA 1051
                      * **** * **  *** ***      *** **** ** *     * *   ********* 

consensus_9441#1      CCACGCTCGGCGGCCGCGTCCGCAGCGTCCTCCTCATCGCCGCCGTCGAGGAGGAAGATC 1008
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CCACACTCGGCGGCCGCGTCAAGAACGTGCTCGTCGTCACCGGGGACGACAGCGCCGCCG 1111
                                                                                  

consensus_9441#1      CAGACG---AGGCCGGGAACGACGACGACGGCGAACAC--GGCTACGGCGTTGCCGCCTC 1063
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CCGCCGCCTGCGCGGGGACGGACGGGGACGGCGAGCAGCAGGAGGAGGCGATGCAGGCGC 1171
                                                                                  

consensus_9441#1      GCAC-CGGAGGCACGAGCTCGTCGCGTCGATCCACGAGGCGCTGCGCGGCGTCATGAACC 1122
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CCATGTCGCCGCAGCACACGGTCGCGTCCATCCAGGACGCGCTGCGCGCCGTCATGGAGC 1231
                                                                                  

consensus_9441#1      GCAAAGCGGCGAGCAGCGACACCTCCTCT---TCCGGCGCCGGCGGCGGC----GGTGGG 1175
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      GGACGGCATCGGCCACCGAGGAGTCCGGGGGGTCGGGCGCCGGCGGTGGGCTCAAGCGGC 1291
                                                                                  

consensus_9441#1      AGC--ATCAAGAGGCAGCGGATGATC--AGTGCACATGATCAGCAAGGTT--CCTTCAAT 1229
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      AGCGCACCACGAGCCTCTCGGCGATCCTAGAGAACAGGTCTATCTAAGCAAGCATCCACA 1351
                                                                                  

consensus_9441#1      TCTAGTGGCTGGTAAAAACTCAAGTCGATCATCGATCCATCCATTAATTCCTGCAGCCTC 1289
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      CATGATGAGATGTGCAAAACGAAACGAAAAAAAAAAACAGTAAAAACAACGTACA-CCAC 1410
                                                                                  

consensus_9441#1      ATCAGAAGTAGCATGAAATATCCATGCTCTTGCTTATGCAACTCAACTTATATTAGTATA 1349
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      ACCACAGTCCACACT--ATCTCAAAGCTGATCATAATACCATGCAGCTAG--CTAGCTAG 1466
                                                                                  

consensus_9441#1      GTTATAAAGCTATATATAGCCGACTTAAAAAAAACTTAGAGTT---TGGATCTTCTTTTT 1406
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      ATTATGGATC-ACATGTTCCCCAAGTACAACCGTTTTCCATTTCTTTAATTTTAGTTTTC 1525
                                                                                  

consensus_9441#1      GGTGTTATGGTGTGTGCATGAGGGAAATCAAAATTAAAGGAAGG---------------- 1450
consensus_9441#2      ------------------------------------------------------------
consensus_9441#0      TCTCCCATTGATTTTATACTAGTACTGCTTTGTGTGTGTGAATCTTGGTGCTGTATATCT 1585
                                                                                  

consensus_9441#1      -----------------------------------
consensus_9441#2      -----------------------------------
consensus_9441#0      GCATGGCATCTCTCAGCAATCAATACAAGGCCACA 1620
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)